From 2cd35cd52a0fba6c6e7f06e27426e35157eebd92 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Fri, 14 Aug 2026 12:11:23 +0200 Subject: [PATCH 1/5] Add submission UUID file --- .../43be056e-97c8-11f1-a881-7d5f8d37e7b5.json | 44 +++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json diff --git a/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json b/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json new file mode 100644 index 000000000..c00af566f --- /dev/null +++ b/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json @@ -0,0 +1,44 @@ +{ + "accession": "MITE9999999", + "status": "pending", + "changelog": [ + { + "version": "1", + "date": "2026-08-14", + "contributors": [ + "0009-0000-8651-1669" + ], + "reviewers": [ + "BBBBBBBBBBBBBBBBBBBBBBBB" + ], + "comment": "New entry." + } + ], + "enzyme": { + "name": "GsfF", + "databaseIds": { + "uniprot": "D7PI20", + "genpept": "" + }, + "references": [ + "doi:" + ] + }, + "reactions": [ + { + "evidence": { + "evidenceCode": [], + "references": [ + "doi:" + ] + }, + "reactions": [ + { + "products": [ + "" + ] + } + ] + } + ] +} \ No newline at end of file From 72d05675109b9fdf5a8f6a066f9dba463e019ad2 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Fri, 14 Aug 2026 12:54:02 +0200 Subject: [PATCH 2/5] Update submission --- .../43be056e-97c8-11f1-a881-7d5f8d37e7b5.json | 53 ++++++++++++++----- 1 file changed, 40 insertions(+), 13 deletions(-) diff --git a/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json b/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json index c00af566f..4e1dba83d 100644 --- a/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json +++ b/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json @@ -1,6 +1,7 @@ { "accession": "MITE9999999", "status": "pending", + "comment": "Catalyzes the intramolecular coupling reaction of griseophenone B in the griseofulvin pathway yielding desmethyl-dehydrogriseofulvin A. No specific CYP oxireductase was found in the genome cluster.", "changelog": [ { "version": "1", @@ -16,29 +17,55 @@ ], "enzyme": { "name": "GsfF", + "description": "Cytochrome P450", + "references": [ + "doi:10.1021/cb400541z", + "doi:10.1016/j.chembiol.2010.03.015" + ], "databaseIds": { "uniprot": "D7PI20", - "genpept": "" + "genpept": "ADI24958.2", + "mibig": "BGC0000070" }, - "references": [ - "doi:" - ] + "cofactors": { + "organic": [ + "Heme" + ], + "inorganic": [ + "Fe" + ] + } }, "reactions": [ { - "evidence": { - "evidenceCode": [], - "references": [ - "doi:" - ] - }, + "tailoring": [ + "Cyclization" + ], + "description": "GsfF catalyzes the intramolecular coupling reaction of griseophenone B, through either a di-radical ring coupling mechanism or an arene oxide intermediate. CYP oxireductase is required.", + "reactionSMARTS": "[#6:1]-[#8:2]-[#6:3]1:[#6:22](-[Cl:23]):[#6:20](-[#8:21]):[#6:7](-[#6:8](-[#6:10]2:[#6:17](-[#8:18]-[#6:19]):[#6:16]:[#6:14](-[#8]):[#6:13]:[#6:11]:2-[#6:12])=[#8:9]):[#6:5](-[#8:6]):[#6:4]:1>>[#6:1]-[#8:2]-[#6:3]1:[#6:22](-[Cl:23]):[#6:20]2-[#8@@:21]\\[#6@@:10]3(/[#6:8](=[#8:9])-[#6:7]:2:[#6:5](-[#8:6]):[#6:4]:1)-[#6:17](-[#8:18]-[#6:19])=[#6:16]-[#6:14](=[#8:2])-[#6:13]=[#6:11]-3-[#6:12]", "reactions": [ { + "substrate": "COc1cc(O)c(C(=O)c2c(C)cc(O)cc2OC)c(O)c1Cl", "products": [ - "" - ] + "COC1=CC(=O)C=C(C)[C@@]12Oc1c(Cl)c(OC)cc(O)c1C2=O" + ], + "isIntermediate": true, + "description": "Oxidative coupling of orcinol and phloroglucinol yielding desmethyl-dehydrogriseofulvin A" } - ] + ], + "evidence": { + "evidenceCode": [ + "Heterologous expression", + "In vitro assay", + "Knock-out studies" + ], + "references": [ + "doi:10.1021/cb400541z" + ] + }, + "databaseIds": { + "rhea": "73935" + } } ] } \ No newline at end of file From 64b65362ecf3b3d539a6f48bdacf8eb0d8f135d5 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Thu, 27 Aug 2026 15:25:16 +0200 Subject: [PATCH 3/5] Delete mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json --- .../43be056e-97c8-11f1-a881-7d5f8d37e7b5.json | 71 ------------------- 1 file changed, 71 deletions(-) delete mode 100644 mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json diff --git a/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json b/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json deleted file mode 100644 index 4e1dba83d..000000000 --- a/mite_data/data/43be056e-97c8-11f1-a881-7d5f8d37e7b5.json +++ /dev/null @@ -1,71 +0,0 @@ -{ - "accession": "MITE9999999", - "status": "pending", - "comment": "Catalyzes the intramolecular coupling reaction of griseophenone B in the griseofulvin pathway yielding desmethyl-dehydrogriseofulvin A. No specific CYP oxireductase was found in the genome cluster.", - "changelog": [ - { - "version": "1", - "date": "2026-08-14", - "contributors": [ - "0009-0000-8651-1669" - ], - "reviewers": [ - "BBBBBBBBBBBBBBBBBBBBBBBB" - ], - "comment": "New entry." - } - ], - "enzyme": { - "name": "GsfF", - "description": "Cytochrome P450", - "references": [ - "doi:10.1021/cb400541z", - "doi:10.1016/j.chembiol.2010.03.015" - ], - "databaseIds": { - "uniprot": "D7PI20", - "genpept": "ADI24958.2", - "mibig": "BGC0000070" - }, - "cofactors": { - "organic": [ - "Heme" - ], - "inorganic": [ - "Fe" - ] - } - }, - "reactions": [ - { - "tailoring": [ - "Cyclization" - ], - "description": "GsfF catalyzes the intramolecular coupling reaction of griseophenone B, through either a di-radical ring coupling mechanism or an arene oxide intermediate. CYP oxireductase is required.", - "reactionSMARTS": "[#6:1]-[#8:2]-[#6:3]1:[#6:22](-[Cl:23]):[#6:20](-[#8:21]):[#6:7](-[#6:8](-[#6:10]2:[#6:17](-[#8:18]-[#6:19]):[#6:16]:[#6:14](-[#8]):[#6:13]:[#6:11]:2-[#6:12])=[#8:9]):[#6:5](-[#8:6]):[#6:4]:1>>[#6:1]-[#8:2]-[#6:3]1:[#6:22](-[Cl:23]):[#6:20]2-[#8@@:21]\\[#6@@:10]3(/[#6:8](=[#8:9])-[#6:7]:2:[#6:5](-[#8:6]):[#6:4]:1)-[#6:17](-[#8:18]-[#6:19])=[#6:16]-[#6:14](=[#8:2])-[#6:13]=[#6:11]-3-[#6:12]", - "reactions": [ - { - "substrate": "COc1cc(O)c(C(=O)c2c(C)cc(O)cc2OC)c(O)c1Cl", - "products": [ - "COC1=CC(=O)C=C(C)[C@@]12Oc1c(Cl)c(OC)cc(O)c1C2=O" - ], - "isIntermediate": true, - "description": "Oxidative coupling of orcinol and phloroglucinol yielding desmethyl-dehydrogriseofulvin A" - } - ], - "evidence": { - "evidenceCode": [ - "Heterologous expression", - "In vitro assay", - "Knock-out studies" - ], - "references": [ - "doi:10.1021/cb400541z" - ] - }, - "databaseIds": { - "rhea": "73935" - } - } - ] -} \ No newline at end of file From 58d08ea47b482ce11d9ad2b494c4cdc8b059e940 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Thu, 27 Aug 2026 15:25:18 +0200 Subject: [PATCH 4/5] Add submission --- mite_data/data/MITE9999999.json | 72 +++++++++++++++++++++++++++++++++ 1 file changed, 72 insertions(+) create mode 100644 mite_data/data/MITE9999999.json diff --git a/mite_data/data/MITE9999999.json b/mite_data/data/MITE9999999.json new file mode 100644 index 000000000..5cd940c3d --- /dev/null +++ b/mite_data/data/MITE9999999.json @@ -0,0 +1,72 @@ +{ + "accession": "MITE9999999", + "status": "active", + "comment": "Catalyzes the intramolecular coupling reaction of griseophenone B in the griseofulvin pathway yielding desmethyl-dehydrogriseofulvin A. ", + "changelog": [ + { + "version": "1", + "date": "2026-08-14", + "contributors": [ + "0009-0000-8651-1669" + ], + "reviewers": [ + "0000-0002-4540-6501" + ], + "comment": "Text was corrected" + } + ], + "enzyme": { + "name": "GsfF", + "description": "Cytochrome P450", + "references": [ + "doi:10.1021/cb400541z", + "doi:10.1016/j.chembiol.2010.03.015" + ], + "databaseIds": { + "uniprot": "D7PI20", + "genpept": "ADI24958.2", + "mibig": "BGC0000070" + }, + "cofactors": { + "organic": [ + "Heme", + "NADP" + ], + "inorganic": [ + "Fe" + ] + } + }, + "reactions": [ + { + "tailoring": [ + "Cyclization" + ], + "description": "GsfF catalyzes the intramolecular coupling reaction of griseophenone B, through either a di-radical ring coupling mechanism or an arene oxide intermediate. CYP oxireductase is required.", + "reactionSMARTS": "[#6:1]-[#8:2]-[#6:3]1:[#6:22](-[Cl:23]):[#6:20](-[#8:21]):[#6:7](-[#6:8](-[#6:10]2:[#6:17](-[#8:18]-[#6:19]):[#6:16]:[#6:14](-[#8]):[#6:13]:[#6:11]:2-[#6:12])=[#8:9]):[#6:5](-[#8:6]):[#6:4]:1>>[#6:1]-[#8:2]-[#6:3]1:[#6:22](-[Cl:23]):[#6:20]2-[#8@@:21]\\[#6@@:10]3(/[#6:8](=[#8:9])-[#6:7]:2:[#6:5](-[#8:6]):[#6:4]:1)-[#6:17](-[#8:18]-[#6:19])=[#6:16]-[#6:14](=[#8:2])-[#6:13]=[#6:11]-3-[#6:12]", + "reactions": [ + { + "substrate": "COc1cc(O)c(C(=O)c2c(C)cc(O)cc2OC)c(O)c1Cl", + "products": [ + "COC1=CC(=O)C=C(C)[C@@]12Oc1c(Cl)c(OC)cc(O)c1C2=O" + ], + "isIntermediate": true, + "description": "Oxidative coupling of orcinol and phloroglucinol yielding desmethyl-dehydrogriseofulvin A" + } + ], + "evidence": { + "evidenceCode": [ + "Heterologous expression", + "In vitro assay", + "Knock-out studies" + ], + "references": [ + "doi:10.1021/cb400541z" + ] + }, + "databaseIds": { + "rhea": "73935" + } + } + ] +} \ No newline at end of file From 0d2611d32b8a58656faca80065d5d6f62490b065 Mon Sep 17 00:00:00 2001 From: "Mitja M. Zdouc" <95709447+mmzdouc@users.noreply.github.com> Date: Wed, 30 Sep 2026 11:35:48 +0200 Subject: [PATCH 5/5] Update and rename MITE9999999.json to MITE0000469.json --- mite_data/data/{MITE9999999.json => MITE0000469.json} | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) rename mite_data/data/{MITE9999999.json => MITE0000469.json} (95%) diff --git a/mite_data/data/MITE9999999.json b/mite_data/data/MITE0000469.json similarity index 95% rename from mite_data/data/MITE9999999.json rename to mite_data/data/MITE0000469.json index 5cd940c3d..6236a2b9d 100644 --- a/mite_data/data/MITE9999999.json +++ b/mite_data/data/MITE0000469.json @@ -1,7 +1,7 @@ { - "accession": "MITE9999999", + "accession": "MITE0000469", "status": "active", - "comment": "Catalyzes the intramolecular coupling reaction of griseophenone B in the griseofulvin pathway yielding desmethyl-dehydrogriseofulvin A. ", + "comment": "Catalyzes the intramolecular coupling reaction of griseophenone B in the griseofulvin pathway yielding desmethyl-dehydrogriseofulvin A.", "changelog": [ { "version": "1", @@ -12,7 +12,7 @@ "reviewers": [ "0000-0002-4540-6501" ], - "comment": "Text was corrected" + "comment": "New entry. Reviewer 1 corrected text." } ], "enzyme": { @@ -69,4 +69,4 @@ } } ] -} \ No newline at end of file +}