Pushed by mite-bot #1393

	name: Validate MITE JSON entry

	run-name: Pushed by ${{ github.actor }}

	permissions:
	contents: read
	on:
	pull_request:
	branches:
	- main
	paths:
	- "mite_data/data/**"

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v5
	with:
	fetch-depth: 2

	- name: Install uv
	uses: astral-sh/setup-uv@v6
	with:
	enable-cache: true
	cache-dependency-glob: "uv.lock"

	- name: Set up Python
	run: uv python install

	- name: Install dependencies
	run: uv sync --all-groups

	- name: Validate MIBiG ref dataset
	run: uv run python pipeline/validate_mibig.py

	- name: Get changed MITE files
	id: files
	run: \|
	git fetch origin ${{ github.event.pull_request.base.ref }}
	CHANGED=$(git diff --name-only --diff-filter=AM origin/${{ github.event.pull_request.base.ref }}...HEAD \| grep -E '^mite_data/data/.+\.json$' \|\| true)
	{
	echo "changed<<EOF"
	echo "$CHANGED"
	echo "EOF"
	} >> "$GITHUB_OUTPUT"

	- name: Run validation scripts on MITE .json files
	if: ${{ steps.files.outputs.changed != '' }}
	run: \|
	echo "Running validation on changed .json files:"
	while IFS= read -r file; do
	echo " -> $file"
	uv run python pipeline/validate_entry.py "$file"
	done <<< "${{ steps.files.outputs.changed }}"

Navigation Menu