From 850d5bbce064b95c4dda6e5ad8f0e269b1f80408 Mon Sep 17 00:00:00 2001
From: Lily Wang <lily@mdanalysis.org>
Date: Tue, 21 Apr 2026 11:00:58 +1000
Subject: [PATCH] comment out everything that prints env without discernment,
 i.e. no grepping

---
 src/data/run_psi_rdvr3_objective.sh           | 10 +++++-----
 src/data/runamber.sh                          | 10 +++++-----
 src/data/runcuda.sh                           | 10 +++++-----
 src/data/rungmx.sh                            | 10 +++++-----
 src/data/runtinker.sh                         | 10 +++++-----
 src/tests/files/targets/dms-liquid/runcuda.sh | 10 +++++-----
 6 files changed, 30 insertions(+), 30 deletions(-)

diff --git a/src/data/run_psi_rdvr3_objective.sh b/src/data/run_psi_rdvr3_objective.sh
index bf81757f7..0cc37b399 100644
--- a/src/data/run_psi_rdvr3_objective.sh
+++ b/src/data/run_psi_rdvr3_objective.sh
@@ -16,12 +16,12 @@ export PATH=/opt/python/2.7.2/bin:$PATH
 export LD_LIBRARY_PATH=/opt/python/2.7.2/lib:$LD_LIBRARY_PATH
 module load psi/tip.opt
 
-echo "#=======================#"
-echo "# ENVIRONMENT VARIABLES #"
-echo "#=======================#"
-echo
+# echo "#=======================#"
+# echo "# ENVIRONMENT VARIABLES #"
+# echo "#=======================#"
+# echo
 
-env
+# env
 
 echo
 echo "#=======================#"
diff --git a/src/data/runamber.sh b/src/data/runamber.sh
index 8b18f6100..52520f98f 100755
--- a/src/data/runamber.sh
+++ b/src/data/runamber.sh
@@ -35,12 +35,12 @@ export BAK=$HOME/temp/rungmx-backups
 # Disable GROMACS backup files
 export GMX_MAXBACKUP=-1
 
-echo "#=======================#"
-echo "# ENVIRONMENT VARIABLES #"
-echo "#=======================#"
-echo
+# echo "#=======================#"
+# echo "# ENVIRONMENT VARIABLES #"
+# echo "#=======================#"
+# echo
 
-env
+# env
 
 echo
 echo "#=======================#"
diff --git a/src/data/runcuda.sh b/src/data/runcuda.sh
index ef54aa6b7..876dd2497 100755
--- a/src/data/runcuda.sh
+++ b/src/data/runcuda.sh
@@ -121,12 +121,12 @@ elif [[ x$PBS_JOBID != x ]] ; then
     sleep $(( PBS_JOBID * 10 ))
 fi
 
-echo "#=======================#"
-echo "# ENVIRONMENT VARIABLES #"
-echo "#=======================#"
-echo
+# echo "#=======================#"
+# echo "# ENVIRONMENT VARIABLES #"
+# echo "#=======================#"
+# echo
 
-env
+# env
 
 echo
 echo "#=======================#"
diff --git a/src/data/rungmx.sh b/src/data/rungmx.sh
index 4c16cb503..284e26d1b 100755
--- a/src/data/rungmx.sh
+++ b/src/data/rungmx.sh
@@ -37,12 +37,12 @@ export BAK=$HOME/temp/rungmx-backups
 # Disable GROMACS backup files
 export GMX_MAXBACKUP=-1
 
-echo "#=======================#"
-echo "# ENVIRONMENT VARIABLES #"
-echo "#=======================#"
-echo
+# echo "#=======================#"
+# echo "# ENVIRONMENT VARIABLES #"
+# echo "#=======================#"
+# echo
 
-env
+# env
 
 echo
 echo "#=======================#"
diff --git a/src/data/runtinker.sh b/src/data/runtinker.sh
index 4c52f0aae..de7b6f12f 100755
--- a/src/data/runtinker.sh
+++ b/src/data/runtinker.sh
@@ -32,12 +32,12 @@ fi
 # Backup folder
 export BAK=$HOME/temp/runtinker-backups
 
-echo "#=======================#"
-echo "# ENVIRONMENT VARIABLES #"
-echo "#=======================#"
-echo
+# echo "#=======================#"
+# echo "# ENVIRONMENT VARIABLES #"
+# echo "#=======================#"
+# echo
 
-env
+# env
 
 echo
 echo "#=======================#"
diff --git a/src/tests/files/targets/dms-liquid/runcuda.sh b/src/tests/files/targets/dms-liquid/runcuda.sh
index 782924c32..be4261331 100755
--- a/src/tests/files/targets/dms-liquid/runcuda.sh
+++ b/src/tests/files/targets/dms-liquid/runcuda.sh
@@ -71,12 +71,12 @@ elif [[ $ARCHIVER == "ranch.tacc.utexas.edu" ]] ; then
     # export BAK=$SCRATCH/runcuda-backups
 fi
 
-echo "#=======================#"
-echo "# ENVIRONMENT VARIABLES #"
-echo "#=======================#"
-echo
+# echo "#=======================#"
+# echo "# ENVIRONMENT VARIABLES #"
+# echo "#=======================#"
+# echo
 
-set
+# set
 
 echo
 echo "#=======================#"