diff --git a/workflows/imaging/tissue-microarray-analysis/multiplex-tissue-microarray-analysis/CHANGELOG.md b/workflows/imaging/tissue-microarray-analysis/multiplex-tissue-microarray-analysis/CHANGELOG.md
index f7b370a22e..0eea74c651 100644
--- a/workflows/imaging/tissue-microarray-analysis/multiplex-tissue-microarray-analysis/CHANGELOG.md
+++ b/workflows/imaging/tissue-microarray-analysis/multiplex-tissue-microarray-analysis/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## [0.1.3] - 2026-03-30
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.3`
+- `toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.10.9+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.11.4+galaxy0`
+
 ## [0.1.2] - 2026-01-19
 
 ### Automatic update
diff --git a/workflows/imaging/tissue-microarray-analysis/multiplex-tissue-microarray-analysis/multiplex-tma.ga b/workflows/imaging/tissue-microarray-analysis/multiplex-tissue-microarray-analysis/multiplex-tma.ga
index 3fb04b351d..9446c925d7 100644
--- a/workflows/imaging/tissue-microarray-analysis/multiplex-tissue-microarray-analysis/multiplex-tma.ga
+++ b/workflows/imaging/tissue-microarray-analysis/multiplex-tissue-microarray-analysis/multiplex-tma.ga
@@ -127,7 +127,7 @@
         },
         "4": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.3",
             "errors": null,
             "id": 4,
             "input_connections": {
@@ -156,16 +156,16 @@
                     "output_name": "output"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.3",
             "tool_shed_repository": {
-                "changeset_revision": "d3c07d270a50",
+                "changeset_revision": "3e27acfa4830",
                 "name": "collection_element_identifiers",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"input_collection\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
             "tool_uuid": null,
-            "tool_version": "0.0.2",
+            "tool_version": "0.0.3",
             "type": "tool",
             "uuid": "318e8981-56a8-4a60-9884-e7060b57df7a",
             "when": null,
@@ -807,7 +807,7 @@
         },
         "17": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.10.9+galaxy2",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.11.4+galaxy0",
             "errors": null,
             "id": 17,
             "input_connections": {
@@ -839,16 +839,16 @@
                 "top": 423.8280944824219
             },
             "post_job_actions": {},
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.10.9+galaxy2",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.11.4+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "e6a8d5fdca85",
+                "changeset_revision": "d9948b3dd270",
                 "name": "anndata_manipulate",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"input\": {\"__class__\": \"ConnectedValue\"}, \"manipulate\": {\"function\": \"concatenate\", \"__current_case__\": 0, \"other_adatas\": {\"__class__\": \"ConnectedValue\"}, \"join\": \"inner\", \"batch_key\": \"batch\", \"uns_merge\": \"None\", \"index_unique\": \"-\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_uuid": null,
-            "tool_version": "0.10.9+galaxy2",
+            "tool_version": "0.11.4+galaxy0",
             "type": "tool",
             "uuid": "60036c99-1c64-4c2b-96dd-cce602766e92",
             "when": null,
@@ -1133,7 +1133,7 @@
         }
     },
     "tags": [],
-    "uuid": "7a4177f3-81ef-410f-89f8-c009e1a15647",
+    "uuid": "7eaa9d63-9ef1-4b2e-8eab-0916b774e684",
     "version": 1,
-    "release": "0.1.2"
+    "release": "0.1.3"
 }
\ No newline at end of file