diff --git a/sources/data/usage_stats/usage_stats_2025.08.31/README.md b/sources/data/usage_stats/usage_stats_2025.08.31/README.md
index b367fe091..4a6343d04 100644
--- a/sources/data/usage_stats/usage_stats_2025.08.31/README.md
+++ b/sources/data/usage_stats/usage_stats_2025.08.31/README.md
@@ -4,20 +4,20 @@ Needs to be run via the Galaxy Admin Stats Account
 
 # tool usage last 5 years
 ```sql
-\copy (SELECT DISTINCT REGEXP_REPLACE(j.tool_id, '(.*)/(.*)', '\1') AS tool_name, COUNT(*) AS count FROM job j WHERE j.create_time BETWEEN '2020-08-31' AND '2025-08-31' GROUP BY tool_name ORDER BY count DESC) TO 'tool_usage_5y_until_2025.08.31.csv' WITH CSV HEADER
+\copy (SELECT DISTINCT REGEXP_REPLACE(j.tool_id, '(.*)/(.*)', '\1') AS tool_name, COUNT(*) AS count FROM job j WHERE j.create_time BETWEEN '2020-08-31' AND '2025-08-31' AND j.state != 'deleted' GROUP BY tool_name ORDER BY count DESC) TO 'tool_usage_5y_until_2025.08.31.csv' WITH CSV HEADER
 ```
 
 # tool usage for ever
 ```sql
-\copy (SELECT DISTINCT REGEXP_REPLACE(j.tool_id, '(.*)/(.*)', '\1') AS tool_name, COUNT(*) AS count FROM job j WHERE j.create_time <= '2025-08-31' GROUP BY tool_name ORDER BY count DESC) TO 'tool_usage_until_2025.08.31.csv' WITH CSV HEADER
+\copy (SELECT DISTINCT REGEXP_REPLACE(j.tool_id, '(.*)/(.*)', '\1') AS tool_name, COUNT(*) AS count FROM job j WHERE j.create_time <= '2025-08-31' AND j.state != 'deleted' GROUP BY tool_name ORDER BY count DESC) TO 'tool_usage_until_2025.08.31.csv' WITH CSV HEADER
 ```
 
 # tool users last 5 years
 ```sql
-\copy (SELECT tool_name, COUNT(*) AS count FROM (SELECT DISTINCT REGEXP_REPLACE(tool_id, '(.*)/(.*)', '\1') AS tool_name, user_id FROM job WHERE create_time BETWEEN '2020-08-31' AND '2025-08-31' GROUP BY tool_name, user_id) AS subquery GROUP BY tool_name ORDER BY count DESC) TO 'tool_users_5y_until_2025.08.31.csv' WITH CSV HEADER
+\copy (SELECT tool_name, COUNT(*) AS count FROM (SELECT DISTINCT REGEXP_REPLACE(tool_id, '(.*)/(.*)', '\1') AS tool_name, user_id FROM job WHERE create_time BETWEEN '2020-08-31' AND '2025-08-31' AND j.state != 'deleted' GROUP BY tool_name, user_id) AS subquery GROUP BY tool_name ORDER BY count DESC) TO 'tool_users_5y_until_2025.08.31.csv' WITH CSV HEADER
 ```
 
 # tool users for ever
 ```sql
-\copy (SELECT tool_name, COUNT(*) AS count FROM (SELECT DISTINCT REGEXP_REPLACE(tool_id, '(.*)/(.*)', '\1') AS tool_name, user_id FROM job WHERE create_time <= '2025-08-31' GROUP BY tool_name, user_id) AS subquery GROUP BY tool_name ORDER BY count DESC) TO 'tool_users_until_2025.08.31.csv' WITH CSV HEADER
-```
\ No newline at end of file
+\copy (SELECT tool_name, COUNT(*) AS count FROM (SELECT DISTINCT REGEXP_REPLACE(tool_id, '(.*)/(.*)', '\1') AS tool_name, user_id FROM job WHERE create_time <= '2025-08-31' AND j.state != 'deleted' GROUP BY tool_name, user_id) AS subquery GROUP BY tool_name ORDER BY count DESC) TO 'tool_users_until_2025.08.31.csv' WITH CSV HEADER
+```