From 5f1939416c310d5598ead8c4f2a39116e3c31604 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Tue, 21 Apr 2026 19:28:28 +0000 Subject: [PATCH 1/3] Initial plan From 24ddd735e5014f59a354e24fcec36cf37147cb08 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Tue, 21 Apr 2026 19:35:10 +0000 Subject: [PATCH 2/3] fix: update fastmcp stack and lock to remove authlib.jose deprecation warning Agent-Logs-Url: https://github.com/docToolchain/dacli/sessions/d4af1677-2bef-4bf7-8454-5421fe1a7398 Co-authored-by: rdmueller <1856308+rdmueller@users.noreply.github.com> --- pyproject.toml | 6 +- src/dacli/__init__.py | 2 +- tests/test_project_setup.py | 12 +++ uv.lock | 166 +++++++++++------------------------- 4 files changed, 66 insertions(+), 120 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 9d9abe4..61984a0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "dacli" -version = "0.4.36" +version = "0.4.37" description = "Documentation Access CLI - Navigate and query large documentation projects" readme = "README.md" license = { text = "MIT" } @@ -21,9 +21,9 @@ dependencies = [ "click>=8.3.1", "cryptography>=46.0.5", # Security fix: CVE-2026-26007 "fastapi>=0.115.0", - "fastmcp>=2.14.0,<3", + "fastmcp>=2.14.7,<3", "pathspec>=1.0.3", - "pydocket<0.17", # Pin to avoid breaking change in 0.17 (fastmcp compatibility) + "pydocket>=0.17.2,<0.19", # Required by fastmcp 2.14.7 "pyyaml>=6.0", "uvicorn>=0.30.0", ] diff --git a/src/dacli/__init__.py b/src/dacli/__init__.py index 3f7dfc4..319a7ec 100644 --- a/src/dacli/__init__.py +++ b/src/dacli/__init__.py @@ -4,4 +4,4 @@ through hierarchical, content-aware access via the Model Context Protocol (MCP). 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Navigate and query large documentation projects" readme = "README.md" license = { text = "MIT" } @@ -21,7 +21,7 @@ dependencies = [ "click>=8.3.1", "cryptography>=46.0.5", # Security fix: CVE-2026-26007 "fastapi>=0.115.0", - "fastmcp>=2.14.7,<3", + "fastmcp>=3.2.0,<4", "pathspec>=1.0.3", "pydocket>=0.17.2,<0.19", # Required by fastmcp 2.14.7 "pyyaml>=6.0", diff --git a/src/dacli/__init__.py b/src/dacli/__init__.py index 319a7ec..7019a4a 100644 --- a/src/dacli/__init__.py +++ b/src/dacli/__init__.py @@ -4,4 +4,4 @@ through hierarchical, content-aware access via the Model Context Protocol (MCP). """ -__version__ = "0.4.37" +__version__ = "0.4.38" diff --git a/tests/test_circular_include_validation_251.py b/tests/test_circular_include_validation_251.py index 310d788..bbdf260 100644 --- a/tests/test_circular_include_validation_251.py +++ b/tests/test_circular_include_validation_251.py @@ -5,6 +5,7 @@ warnings. """ +import asyncio from pathlib import Path import pytest @@ -64,9 +65,8 @@ def test_circular_include_reported_as_error(self, temp_circular_include: Path): """Issue #251: Circular includes should be reported as circular_include errors.""" mcp = create_mcp_server(temp_circular_include) - # Access validate_structure tool - tools = {t.name: t for t in mcp._tool_manager._tools.values()} - result = tools["validate_structure"].fn() + validate_tool = asyncio.run(mcp.get_tool("validate_structure")) + result = validate_tool.fn() # Should NOT be valid due to circular include assert ( @@ -83,8 +83,8 @@ def test_circular_include_not_reported_as_orphaned(self, temp_circular_include: """Issue #251: Files involved in circular includes should NOT be reported as orphaned.""" mcp = create_mcp_server(temp_circular_include) - tools = {t.name: t for t in mcp._tool_manager._tools.values()} - result = tools["validate_structure"].fn() + validate_tool = asyncio.run(mcp.get_tool("validate_structure")) + result = validate_tool.fn() # Check that no orphaned_file warnings exist for the circular files orphaned_warnings = [w for w in result["warnings"] if w["type"] == "orphaned_file"] @@ -101,8 +101,8 @@ def test_circular_include_error_contains_chain(self, temp_circular_include: Path """Circular include error should include the include chain.""" mcp = create_mcp_server(temp_circular_include) - tools = {t.name: t for t in mcp._tool_manager._tools.values()} - result = tools["validate_structure"].fn() + validate_tool = asyncio.run(mcp.get_tool("validate_structure")) + result = validate_tool.fn() circular_errors = [e for e in result["errors"] if e["type"] == "circular_include"] assert len(circular_errors) >= 1 @@ -116,8 +116,8 @@ def test_self_circular_include_reported_as_error(self, temp_self_circular_includ """A file that includes itself should be reported as circular_include error.""" mcp = create_mcp_server(temp_self_circular_include) - tools = {t.name: t for t in mcp._tool_manager._tools.values()} - result = tools["validate_structure"].fn() + validate_tool = asyncio.run(mcp.get_tool("validate_structure")) + result = validate_tool.fn() # Should NOT be valid assert result["valid"] is False diff --git a/tests/test_elements_help_types_259.py b/tests/test_elements_help_types_259.py index 5c50b00..cbae50a 100644 --- a/tests/test_elements_help_types_259.py +++ b/tests/test_elements_help_types_259.py @@ -4,6 +4,7 @@ admonition, code, image, list, plantuml, table (not 'diagram'). """ +import asyncio from pathlib import Path import pytest @@ -39,11 +40,7 @@ def test_cli_help_lists_correct_types(self, docs_dir: Path): def test_mcp_tool_docstring_lists_correct_types(self, docs_dir: Path): """MCP get_elements tool docstring should list correct types in Args section.""" mcp = create_mcp_server(docs_dir) - elements_tool = None - for tool in mcp._tool_manager._tools.values(): - if tool.name == "get_elements": - elements_tool = tool - break + elements_tool = asyncio.run(mcp.get_tool("get_elements")) assert elements_tool is not None docstring = elements_tool.fn.__doc__ # The Args section listing valid types should include the correct ones diff --git a/tests/test_get_dependencies_67.py b/tests/test_get_dependencies_67.py index d0f6527..5d5cd84 100644 --- a/tests/test_get_dependencies_67.py +++ b/tests/test_get_dependencies_67.py @@ -1,5 +1,6 @@ """Tests for get_dependencies endpoint (Issue #67, Phase 1: include_tree).""" +import asyncio from pathlib import Path from dacli.asciidoc_parser import AsciidocDocument, AsciidocStructureParser, IncludeInfo @@ -164,8 +165,8 @@ def test_get_dependencies_tool_exists(self, tmp_path): from dacli.mcp_app import create_mcp_server mcp = create_mcp_server(tmp_path) - tool_names = [t.name for t in mcp._tool_manager._tools.values()] - assert "get_dependencies" in tool_names + tool = asyncio.run(mcp.get_tool("get_dependencies")) + assert tool is not None def test_get_dependencies_tool_returns_structure(self, tmp_path): """get_dependencies MCP tool returns include_tree and cross_references.""" diff --git a/tests/test_manipulation_bugs_244_245.py b/tests/test_manipulation_bugs_244_245.py index d1da823..cc52dce 100644 --- a/tests/test_manipulation_bugs_244_245.py +++ b/tests/test_manipulation_bugs_244_245.py @@ -8,6 +8,7 @@ the next heading when inserted content itself is a heading. """ +import asyncio from pathlib import Path import pytest @@ -236,10 +237,10 @@ class TestBug244InsertAfterBlankLine: def _get_insert_tool(self, mcp): """Helper to get the insert_content tool from MCP server.""" - for tool in mcp._tool_manager._tools.values(): - if tool.name == "insert_content": - return tool - raise AssertionError("insert_content tool not found") + tool = asyncio.run(mcp.get_tool("insert_content")) + if tool is None: + raise AssertionError("insert_content tool not found") + return tool def test_insert_heading_after_section_blank_line_before_next(self, md_for_insert: Path): """Bug #244: When inserting heading content after a section, there should diff --git a/tests/test_mcp_insert_after_229.py b/tests/test_mcp_insert_after_229.py index a20ba80..bbd3d83 100644 --- a/tests/test_mcp_insert_after_229.py +++ b/tests/test_mcp_insert_after_229.py @@ -4,6 +4,7 @@ not just the section's own content. """ +import asyncio from pathlib import Path import pytest @@ -42,12 +43,7 @@ def test_insert_after_parent_goes_after_children(self, temp_doc_with_children: P """Issue #229: Insert after parent should go after all children.""" mcp = create_mcp_server(temp_doc_with_children) - # Get the insert_content tool - insert_tool = None - for tool in mcp._tool_manager._tools.values(): - if tool.name == "insert_content": - insert_tool = tool - break + insert_tool = asyncio.run(mcp.get_tool("insert_content")) assert insert_tool is not None, "insert_content tool not found" @@ -79,11 +75,7 @@ def test_insert_after_leaf_section(self, temp_doc_with_children: Path): """Insert after a section without children should work correctly.""" mcp = create_mcp_server(temp_doc_with_children) - insert_tool = None - for tool in mcp._tool_manager._tools.values(): - if tool.name == "insert_content": - insert_tool = tool - break + insert_tool = asyncio.run(mcp.get_tool("insert_content")) # Insert after "Child Section" (no children) result = insert_tool.fn( diff --git a/tests/test_mcp_insert_blank_lines_232.py b/tests/test_mcp_insert_blank_lines_232.py index 2da35d4..aa7f9fe 100644 --- a/tests/test_mcp_insert_blank_lines_232.py +++ b/tests/test_mcp_insert_blank_lines_232.py @@ -5,6 +5,7 @@ - Add blank line after content when next line is a heading """ +import asyncio from pathlib import Path import pytest @@ -39,11 +40,7 @@ def test_insert_before_adds_blank_line_after_content(self, temp_doc_for_blank_li """Issue #232: Insert before should add blank line when next is heading.""" mcp = create_mcp_server(temp_doc_for_blank_lines) - insert_tool = None - for tool in mcp._tool_manager._tools.values(): - if tool.name == "insert_content": - insert_tool = tool - break + insert_tool = asyncio.run(mcp.get_tool("insert_content")) # Insert content before Section 2 result = insert_tool.fn( @@ -72,11 +69,7 @@ def test_insert_after_adds_blank_line_before_next_heading(self, temp_doc_for_bla """Issue #232: Insert after should add blank line before next heading.""" mcp = create_mcp_server(temp_doc_for_blank_lines) - insert_tool = None - for tool in mcp._tool_manager._tools.values(): - if tool.name == "insert_content": - insert_tool = tool - break + insert_tool = asyncio.run(mcp.get_tool("insert_content")) # Insert content after Section 1 result = insert_tool.fn( diff --git a/tests/test_mcp_negative_params_220.py b/tests/test_mcp_negative_params_220.py index 478c84f..0743d58 100644 --- a/tests/test_mcp_negative_params_220.py +++ b/tests/test_mcp_negative_params_220.py @@ -4,6 +4,7 @@ content_limit should be rejected with a clear error message. """ +import asyncio from pathlib import Path import pytest @@ -50,12 +51,7 @@ class TestSearchNegativeMaxResults: def test_search_negative_max_results_should_error(self, mcp_server): """Issue #220: search with negative max_results should raise error.""" - # Get the search tool - search_tool = None - for tool in mcp_server._tool_manager._tools.values(): - if tool.name == "search": - search_tool = tool - break + search_tool = asyncio.run(mcp_server.get_tool("search")) assert search_tool is not None, "search tool not found" @@ -69,12 +65,7 @@ class TestGetStructureNegativeMaxDepth: def test_get_structure_negative_max_depth_should_error(self, mcp_server): """Issue #220: get_structure with negative max_depth should raise error.""" - # Get the get_structure tool - get_structure_tool = None - for tool in mcp_server._tool_manager._tools.values(): - if tool.name == "get_structure": - get_structure_tool = tool - break + get_structure_tool = asyncio.run(mcp_server.get_tool("get_structure")) assert get_structure_tool is not None, "get_structure tool not found" @@ -88,12 +79,7 @@ class TestGetSectionsAtLevelNegativeLevel: def test_get_sections_at_level_negative_should_error(self, mcp_server): """Issue #220: get_sections_at_level with negative level should raise error.""" - # Get the get_sections_at_level tool - get_sections_tool = None - for tool in mcp_server._tool_manager._tools.values(): - if tool.name == "get_sections_at_level": - get_sections_tool = tool - break + get_sections_tool = asyncio.run(mcp_server.get_tool("get_sections_at_level")) assert get_sections_tool is not None, "get_sections_at_level tool not found" @@ -103,11 +89,7 @@ def test_get_sections_at_level_negative_should_error(self, mcp_server): def test_get_sections_at_level_zero_should_error(self, mcp_server): """Issue #220: get_sections_at_level with level=0 should raise error.""" - get_sections_tool = None - for tool in mcp_server._tool_manager._tools.values(): - if tool.name == "get_sections_at_level": 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