#2 after Points basic functionality, connect to Outputs

[HaleySchuhl]

• SAVE coords to Outputs class
• SAVE counts per group label to Outputs

Not yet sure how to handle communication between Outputs :

from plantcv.plantcv import warn, params, outputs


def save_counts(self, label=None):
        """Save collected coordinates to Outputs.observations""" 
        if label is None:
            label = params.sample_label
        for i, x in enumerate(self.count.keys()):
            variable = x
            value = self.count[x]
            outputs.add_observation(sample=label, variable=str(variable) + "_count",
                                    trait='count of category',
                                    method='count', scale='count', datatype=int,
                                    value=value, label='none')

def save_coords(self, label=None):
        """Save collected coordinates to Outputs.observations""" 
        if label is None:
            label = params.sample_label
        for i, x in enumerate(self.count.keys()):
            variable = x
            value = self.points[x]
            outputs.add_observation(sample=label, variable=str(variable) + "_coords",
                                    trait='collected coordinates',
                                    method='annotation', scale='count', datatype=list,
                                    value=value, label='none')