From c553e1e2779890fa4adf5640d44a460bfb5a6b17 Mon Sep 17 00:00:00 2001 From: Nicolas Lacroix Date: Thu, 30 Oct 2025 10:43:48 +0100 Subject: [PATCH 01/45] build(healthcheck): Add healtcheck endpoint for API --- .python-version | 1 + app/main.py | 17 +++++++++++++---- docker-compose.yml | 18 ++++++++++++------ pyproject.toml | 5 ++++- uv.lock | 2 +- 5 files changed, 31 insertions(+), 12 deletions(-) create mode 100644 .python-version diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..e4fba21 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.12 diff --git a/app/main.py b/app/main.py index 8aed54b..f9fe2b2 100644 --- a/app/main.py +++ b/app/main.py @@ -2,7 +2,7 @@ from typing import Any -from fastapi import FastAPI +from fastapi import FastAPI, status from pydantic import BaseModel from app.custom_types import ( @@ -14,8 +14,6 @@ app = FastAPI() -# TODO: adapt core_api to /profile API changes - APP_VERSION = "0.3.0-MLProfile" @@ -101,7 +99,7 @@ def profile_notebook(params: ProfileNotebookParams) -> MLProfileResult: and subgraph.step_name != "Library Loading" ): current_step = "Others" - + res["metadata"]["perplexity"] = perplexity res["metadata"]["logprobs"] = logprobs @@ -118,3 +116,14 @@ def profile_notebook(params: ProfileNotebookParams) -> MLProfileResult: prev_step = current_step return profile_json + + +@app.get( + "/health", + tags=["healthcheck"], + summary="Perform a Health Check", + response_description="Return HTTP Status Code 200 (OK)", + status_code=status.HTTP_200_OK, +) +def get_health(): + return "OK" diff --git a/docker-compose.yml b/docker-compose.yml index e19016e..4b5fc1a 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -7,9 +7,9 @@ services: networks: - colombus-dev_network volumes: - - ./data:/code/data:rw - - ./resources:/code/resources:rw - - ./out:/code/out:rw + - ./data:/mlprofiler-builder/data:rw + - ./resources:/mlprofiler-builder/resources:rw + - ./out:/mlprofiler-builder/out:rw environment: INFERENCE_API_URL: mlprofiler_vllm:11434 MODEL_ID: ${LLM_MODEL_ID} @@ -20,16 +20,22 @@ services: watch: - action: sync path: ./app - target: /code/app + target: /mlprofiler-builder/app initial_sync: true - action: sync path: ./resources - target: /code/resources/ + target: /mlprofiler-builder/resources/ initial_sync: true - action: sync path: ./templates - target: /code/templates/ + target: /mlprofiler-builder/templates/ initial_sync: true + healthcheck: + test: curl -f http://localhost:8081/health || exit 1 + interval: 5m + timeout: 3s + retries: 3 + start_period: 20s depends_on: - mlprofiler_vllm # mlprofiler_local_inference: diff --git a/pyproject.toml b/pyproject.toml index 8ed34cd..4d5e543 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,7 +1,7 @@ [project] name = "mlprofiler" version = "0.3.0" -description = "" +description = "mlprofiler - The ML pipelines profiler" authors = [] readme = "README.md" requires-python = ">=3.12.0,<4.0" @@ -22,3 +22,6 @@ dev = [ "black>=25.9.0", "isort>=7.0.0", ] + +[tool.uv] +default-groups = [] diff --git a/uv.lock b/uv.lock index ceac6a6..73887b7 100644 --- a/uv.lock +++ b/uv.lock @@ -544,7 +544,7 @@ wheels = [ [[package]] name = "mlprofiler" -version = "0.1.0" +version = "0.3.0" source = { virtual = "." } dependencies = [ { name = "fastapi", extra = ["standard"] }, From ffa15203c5cfb73e479232dae6797b5a013676dc Mon Sep 17 00:00:00 2001 From: Nicolas Lacroix Date: Fri, 30 Jan 2026 11:37:22 +0100 Subject: [PATCH 02/45] feat(parser): Add dspipelines parser --- CHANGELOG.md | 5 + README.md | 2 +- app/custom_types.py | 1 + app/parsers/__init__.py | 2 + app/parsers/_base.py | 19 +++ app/parsers/_factory.py | 11 ++ app/parsers/dspipelines.py | 292 +++++++++++++++++++++++++++++++++++++ 7 files changed, 331 insertions(+), 1 deletion(-) create mode 100644 app/parsers/__init__.py create mode 100644 app/parsers/_base.py create mode 100644 app/parsers/_factory.py create mode 100644 app/parsers/dspipelines.py diff --git a/CHANGELOG.md b/CHANGELOG.md index b06c798..ac33188 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] +### Added + +- Parser metadata in JSON ML profile. +- "dspipelines" parser + ## [0.3] - 2025-07-16 ### Added diff --git a/README.md b/README.md index 7b51740..6ce8e55 100644 --- a/README.md +++ b/README.md @@ -17,5 +17,5 @@ $ docker compose --env-file .env up It is also possible to deploy the LLM monitoring platform (Langfuse) as follows: ```bash -$ docker compose --file docker-compose-monitor-local.yml +$ docker compose --file docker-compose-monitor-local.yml up ``` diff --git a/app/custom_types.py b/app/custom_types.py index bebe4fc..0f541d8 100644 --- a/app/custom_types.py +++ b/app/custom_types.py @@ -16,4 +16,5 @@ class ParserSubgraph(BaseModel): SupportedTaxonomiesFunction = Literal["headergen", "dspipelines", "daswow"] +SupportedParserFunction = Literal["dspipelines"] SupportedProfilerFunction = Literal["llm", "dspipelines", "headergen"] diff --git a/app/parsers/__init__.py b/app/parsers/__init__.py new file mode 100644 index 0000000..5fd282e --- /dev/null +++ b/app/parsers/__init__.py @@ -0,0 +1,2 @@ +from app.parsers.dspipelines import * +from app.parsers._factory import * diff --git a/app/parsers/_base.py b/app/parsers/_base.py new file mode 100644 index 0000000..2a52fcf --- /dev/null +++ b/app/parsers/_base.py @@ -0,0 +1,19 @@ +from abc import ABC, abstractmethod + +from app.custom_types import ParserSubgraph + + +class BaseMLParser(ABC): + def __init__(self) -> None: + super().__init__() + + @abstractmethod + def parse_code(self, python_code: str) -> list[ParserSubgraph]: + """Parse a given python code to extract the instructions to classify. + + Args: + python_code (str): the python code to parse + + Returns: + list[ParserSubgraph]: the retrieved subgraphes from the given code + """ diff --git a/app/parsers/_factory.py b/app/parsers/_factory.py new file mode 100644 index 0000000..fd38378 --- /dev/null +++ b/app/parsers/_factory.py @@ -0,0 +1,11 @@ +from app.custom_types import SupportedParserFunction +from app.parsers._base import BaseMLParser +from app.parsers.dspipelines import DSPipelinesParser + + +def get_parser(parser_name: SupportedParserFunction) -> BaseMLParser: + match parser_name: + case "dspipelines": + return DSPipelinesParser() + case _: + raise ValueError(f"Invalid parser name [{parser_name}].") diff --git a/app/parsers/dspipelines.py b/app/parsers/dspipelines.py new file mode 100644 index 0000000..f85735e --- /dev/null +++ b/app/parsers/dspipelines.py @@ -0,0 +1,292 @@ +import ast +import uuid + +from app.custom_types import ParserSubgraph +from app.parsers._base import BaseMLParser + + +#### TODO: adapted from https://github.com/sumonbis/DS-Pipeline below + + +class DSPipelinesParser(BaseMLParser): + def __init__(self): + super().__init__() + self.__subgraphes: list[ParserSubgraph] = [] + + def parse_code(self, python_code: str) -> list[ParserSubgraph]: + tree = ast.parse(python_code) + visitor = FuncLister() + visitor.s_list = [] + visitor.f_name = [] + visitor.f_dict = {} + visitor.symb_dict = {} + visitor.arg_arr = [] + visitor.symb_arr = [] + visitor.visit(tree) + + edges = [] + pipe = [] + + for i in range(len(visitor.s_list)): + ins = list(set(visitor.arg_arr[i])) + for j in ins: + found = False + for k in range(i - 1, -1, -1): + for sym in visitor.symb_arr[k]: + if j == sym: + edges.append((k, i)) + found = True + break + if found: + break + + rec = [] + self.build_pipe(visitor.s_list[i], visitor.f_dict, pipe, rec) + + computed_subgraphes = [*self.__subgraphes] + self.__subgraphes.clear() + return computed_subgraphes + + def build_pipe(self, elem, dict, pipe, rec): + if elem["root"].startswith("9"): + # if custom function call + func_name = elem["root"][1:] + if len(dict[func_name]) > 0: + for ss in dict[func_name]: + if len(rec) < 100: + rec.append(ss) + self.build_pipe(ss, dict, pipe, rec) + rec = [] + elif (len(pipe) == 0) or (pipe[-1] != elem): + pipe.append(elem["root"]) + splitted_libfunc = elem["api"].split(".") + self.__subgraphes.append( + ParserSubgraph( + id=str(uuid.uuid4()), + library="", + function=splitted_libfunc[-1].split(" ")[0], + value={}, + source=ast.unparse(elem["node"]), + step_name="", + ) + ) + + +class FuncLister(ast.NodeVisitor): + trailler = "" + isClass = False + isFunc = 0 + + symb_dict = {} + s_list = [] + f_name = [] + f_dict = {} + arg_arr = [] + symb_arr = [] + symb = [] + + def visit_ClassDef(self, node): + self.generic_visit(node) + + def visit_FunctionDef(self, node): + self.isFunc += 1 + self.f_name.append(node.name) + self.f_dict[self.f_name[-1]] = [] + self.generic_visit(node) + self.f_name.pop() + self.isFunc -= 1 + + def visit_Assign(self, node): + self.symb = [] + sym = "" + for target in node.targets: + if isinstance(target, ast.Tuple): + for e in target.elts: + sym = self.getSymbol(e) + self.symb.append(sym) + self.symb_dict[sym] = "-" + else: + sym = self.getSymbol(target) + self.symb.append(sym) + self.symb_dict[sym] = "-" + self.generic_visit(node) + self.symb = [] + + def getSymbol(self, target): + if isinstance(target, ast.Name): + return target.id + elif isinstance(target, ast.Subscript): + if ( + isinstance(target.value, ast.Name) + and isinstance(target.slice, ast.Index) + and isinstance(target.slice.value, ast.Name) + ): + return target.value.id + "[" + target.slice.value.id + "]" + elif isinstance(target, ast.Attribute): + return target.attr + else: + return "?" + + def visit_Call(self, node): + api = "" + ar = "" + arg = [] + if isinstance(node.func, ast.Name): + try: + arg = FuncLister.get_args(node) + ar = str(arg) + except: # noqa: E722 + ar = "[?]" + api_name = str(node.func.id) + if api_name.endswith("app.run"): + api_name = "main" + api = api_name + " " + ar + + elif isinstance(node.func, ast.Attribute): + n = node.func + FuncLister.trailler = "" + AttrLister().visit(n) + tr = FuncLister.trailler + if tr.endswith("app.run"): + tr = "main" + try: + arg = FuncLister.get_args(node) + ar = str(arg) + except: # noqa: E722 + ar = "[?]" + api = tr + " " + ar + + if api != "": + root = Utils.get_root(api, self.f_dict.keys()) + + # TODO: implement this condition in the profiling function + # if s == "0" or s == "8": + # pass + # else: + if self.isFunc > 0: + self.f_dict[self.f_name[-1]].append( + {"root": root, "node": node, "api": api} + ) + else: + self.s_list.append({"root": root, "node": node, "api": api}) + self.arg_arr.append(arg) + self.symb_arr.append(self.symb) + + self.generic_visit(node) + + def get_args(node): + a = [] + b = [] + for arg in node.args: + if isinstance(arg, ast.Starred): + a.append(arg.value.id) + # elif isinstance(arg, ast.Str): + elif isinstance(arg, ast.BinOp): + a.append( + Utils.get_val(arg.left) + + Utils.get_bin_op(arg.op) + + Utils.get_val(arg.right) + ) + else: + a.append(Utils.get_val(arg)) + if isinstance(arg, ast.Name): + b.append(Utils.get_val(arg)) ### + for kw in node.keywords: + if isinstance(kw, ast.keyword): + if kw.arg is None: + a.append("**" + kw.value.id) + else: + a.append(kw.arg + "=" + Utils.get_val(kw.value)) + return b + + +class AttrLister(ast.NodeVisitor): + def visit_Attribute(self, node): + if isinstance(node.value, ast.Attribute): + if FuncLister.trailler == "": + FuncLister.trailler = node.attr + else: + FuncLister.trailler = node.attr + "." + FuncLister.trailler + if isinstance(node.value, ast.Name): + if FuncLister.trailler == "": + FuncLister.trailler = node.value.id + "." + node.attr + else: + FuncLister.trailler = ( + node.value.id + "." + node.attr + "." + FuncLister.trailler + ) + self.generic_visit(node) + + +class Utils: + @classmethod + def get_val(cls, node): + if isinstance(node, ast.Num): + return str(node.n) + elif isinstance(node, ast.Str): + return str(node.s) + elif isinstance(node, ast.Name): + return str(node.id) + elif isinstance(node, ast.NameConstant): + return str(node.value) + elif isinstance(node, ast.Call): + return "CALL" + elif isinstance(node, ast.Subscript): + return str( + cls.get_val(node.value) + ) # + handle subcript Slice(Index, Slice or ExtSlice) + elif isinstance(node, ast.Attribute): + FuncLister.trailler = "" + AttrLister().visit(node) + return FuncLister.trailler + elif isinstance(node, ast.List): + return str(cls.get_elts(node)) + elif isinstance(node, ast.Tuple): + return str(cls.get_elts(node)) + else: + return "UNKNOWN" + + @classmethod + def get_elts(cls, node): + a = [] + for e in node.elts: + a.append(cls.get_val(e)) + return str(a) + + @classmethod + def get_bin_op(cls, node): + if isinstance(node, ast.Add): + return " + " + elif isinstance(node, ast.Sub): + return " - " + elif isinstance(node, ast.Mult): + return " * " + elif isinstance(node, ast.Div): + return " / " + elif isinstance(node, ast.FloorDiv): + return " // " + elif isinstance(node, ast.Mod): + return " % " + elif isinstance(node, ast.Pow): + return " ** " + elif isinstance(node, ast.LShift): + return " << " + elif isinstance(node, ast.RShift): + return " >> " + elif isinstance(node, ast.BitAnd): + return " B_AND " + elif isinstance(node, ast.BitOr): + return " B_OR " + elif isinstance(node, ast.BitXor): + return " B_XOR " + + @classmethod + def get_root(cls, api, fs) -> str: + # TODO: add doc + name = api.split(" [")[0] + parts = name.split(".") + root = parts[-1] + + if root in fs: + s = "9" + root + return s + return root From fc761c2d502132bb6a9291e080fd43a97aed0d45 Mon Sep 17 00:00:00 2001 From: Nicolas Lacroix Date: Fri, 30 Jan 2026 11:45:40 +0100 Subject: [PATCH 03/45] feat(profiling): Add support for external taxonomies (provided by the client) --- app/main.py | 49 +- app/profiling_functions/_base.py | 10 +- app/profiling_functions/_factory.py | 12 +- app/profiling_functions/_utils.py | 13 +- app/profiling_functions/dspipelines.py | 8 +- app/profiling_functions/headergen.py | 8 +- app/profiling_functions/llm.py | 18 +- docker-compose.yml | 10 +- pyproject.toml | 4 +- resources/taxonomies/daswow_taxonomy.json | 91 +- .../taxonomies/dspipelines_taxonomy.json | 2 +- templates/system_prompt.jinja | 2 +- templates/user_prompt_daswow_taxonomy.jinja | 15 - .../user_prompt_headergen_taxonomy.jinja | 19 - ...onomy.jinja => user_prompt_taxonomy.jinja} | 2 +- uv.lock | 864 ++++++++++-------- 16 files changed, 621 insertions(+), 506 deletions(-) delete mode 100644 templates/user_prompt_daswow_taxonomy.jinja delete mode 100644 templates/user_prompt_headergen_taxonomy.jinja rename templates/{user_prompt_dspipelines_taxonomy.jinja => user_prompt_taxonomy.jinja} (96%) diff --git a/app/main.py b/app/main.py index f9fe2b2..016f902 100644 --- a/app/main.py +++ b/app/main.py @@ -2,26 +2,30 @@ from typing import Any -from fastapi import FastAPI, status +from fastapi import FastAPI from pydantic import BaseModel from app.custom_types import ( - ParserSubgraph, + SupportedParserFunction, SupportedProfilerFunction, - SupportedTaxonomiesFunction, ) -from app.profiling_functions._factory import get_profiler +from app.parsers import get_parser +from app.profiling_functions import get_profiler +from app.profiling_functions._utils import Taxonomy app = FastAPI() -APP_VERSION = "0.3.0-MLProfile" +# TODO: adapt core_api to /profile API changes + +APP_VERSION = "0.4.0-MLProfile" class MLProfileMetadata(BaseModel): version: str generation_date: datetime.datetime - taxonomy: SupportedTaxonomiesFunction + taxonomy: str profiler: SupportedProfilerFunction + parser: SupportedParserFunction class MLProfileResult(BaseModel): @@ -33,9 +37,10 @@ class MLProfileResult(BaseModel): class ProfileNotebookParams(BaseModel): notebook_file_stem: str + context: str | None = None # enables profiling subset of python_content (e.g., notebook cell) while keeping the whole context (default: python_content) python_content: str - parser_elements: list[ParserSubgraph] - taxonomy_name: SupportedTaxonomiesFunction + taxonomy: Taxonomy + parser_name: SupportedParserFunction profiler_name: SupportedProfilerFunction @@ -59,21 +64,24 @@ def profile_notebook(params: ProfileNotebookParams) -> MLProfileResult: metadata=MLProfileMetadata( version=APP_VERSION, generation_date=datetime.datetime.now(), - taxonomy=params.taxonomy_name, + taxonomy=params.taxonomy.name, profiler=params.profiler_name, + parser=params.parser_name, ), source=[], outputs={}, ) prev_step = None + parser = get_parser(params.parser_name) + profiler = get_profiler( profile_json.metadata.profiler, - params.python_content, - profile_json.metadata.taxonomy, + params.context or params.python_content, + params.taxonomy, ) - for subgraph in params.parser_elements: + for subgraph in parser.parse_code(params.python_content): line = subgraph.source res = { @@ -85,7 +93,7 @@ def profile_notebook(params: ProfileNotebookParams) -> MLProfileResult: "library": subgraph.library, "function": subgraph.function, "tasks": [{"name": line, "tasks": []}], - "metadata": {} + "metadata": {}, } if subgraph.step_name == "Library Loading": @@ -93,7 +101,9 @@ def profile_notebook(params: ProfileNotebookParams) -> MLProfileResult: perplexity = 1 logprobs = 100 else: - current_step, perplexity, logprobs = profiler.profile_subgraph(subgraph, "Others") + current_step, perplexity, logprobs = profiler.profile_subgraph( + subgraph, "Others" + ) if ( current_step == "Library Loading" and subgraph.step_name != "Library Loading" @@ -116,14 +126,3 @@ def profile_notebook(params: ProfileNotebookParams) -> MLProfileResult: prev_step = current_step return profile_json - - -@app.get( - "/health", - tags=["healthcheck"], - summary="Perform a Health Check", - response_description="Return HTTP Status Code 200 (OK)", - status_code=status.HTTP_200_OK, -) -def get_health(): - return "OK" diff --git a/app/profiling_functions/_base.py b/app/profiling_functions/_base.py index 1f1c882..3592e60 100644 --- a/app/profiling_functions/_base.py +++ b/app/profiling_functions/_base.py @@ -1,18 +1,18 @@ from abc import ABC, abstractmethod -from app.custom_types import ParserSubgraph, SupportedTaxonomiesFunction -from app.profiling_functions._utils import load_taxonomy +from app.custom_types import ParserSubgraph +from app.profiling_functions._utils import Taxonomy class BaseMLProfiler(ABC): def __init__( - self, python_content: str, taxonomy_name: SupportedTaxonomiesFunction + self, python_content: str, taxonomy: Taxonomy ) -> None: super().__init__() - self.python_content = python_content - self.taxonomy = load_taxonomy(taxonomy_name) + self.python_content: str = python_content + self.taxonomy: Taxonomy = taxonomy @abstractmethod def profile_subgraph( diff --git a/app/profiling_functions/_factory.py b/app/profiling_functions/_factory.py index bad3e2e..6aa47bc 100644 --- a/app/profiling_functions/_factory.py +++ b/app/profiling_functions/_factory.py @@ -1,5 +1,5 @@ from app.custom_types import SupportedProfilerFunction -from app.profiling_functions._base import BaseMLProfiler +from app.profiling_functions._base import BaseMLProfiler, Taxonomy from app.profiling_functions.dspipelines import DSPipelinesProfiler from app.profiling_functions.headergen import HeaderGenProfiler from app.profiling_functions.llm import LLMProfiler @@ -8,20 +8,20 @@ def get_profiler( profiler_name: SupportedProfilerFunction, python_content: str, - taxonomy_name: str, + taxonomy: Taxonomy, ) -> BaseMLProfiler: - match (profiler_name): + match profiler_name: case "llm": return LLMProfiler( - python_content=python_content, taxonomy_name=taxonomy_name + python_content=python_content, taxonomy=taxonomy ) case "dspipelines": return DSPipelinesProfiler( - python_content=python_content, taxonomy_name=taxonomy_name + python_content=python_content, taxonomy=taxonomy ) case "headergen": return HeaderGenProfiler( - python_content=python_content, taxonomy_name=taxonomy_name + python_content=python_content, taxonomy=taxonomy ) case _: raise ValueError(f"Invalid profiler name [{profiler_name}].") diff --git a/app/profiling_functions/_utils.py b/app/profiling_functions/_utils.py index c5335d9..c2ceda6 100644 --- a/app/profiling_functions/_utils.py +++ b/app/profiling_functions/_utils.py @@ -1,9 +1,5 @@ -from pathlib import Path - from pydantic import BaseModel -from app.custom_types import SupportedTaxonomiesFunction - class TaxonomyElement(BaseModel): compatible_name: str @@ -13,7 +9,7 @@ class TaxonomyElement(BaseModel): class Taxonomy(BaseModel): - name: SupportedTaxonomiesFunction + name: str elements: list[TaxonomyElement] def get_original_steps_names(self) -> list[str]: @@ -29,10 +25,3 @@ def get_original_name_from_compatible( if e.compatible_name == compatible_name: return e.original_name return default_name - - -def load_taxonomy(taxonomy_name: SupportedTaxonomiesFunction) -> Taxonomy: - raw_taxonomy = Path( - f"resources/taxonomies/{taxonomy_name}_taxonomy.json" - ).read_text() - return Taxonomy.model_validate_json(raw_taxonomy) diff --git a/app/profiling_functions/dspipelines.py b/app/profiling_functions/dspipelines.py index d684d37..6316856 100644 --- a/app/profiling_functions/dspipelines.py +++ b/app/profiling_functions/dspipelines.py @@ -2,8 +2,8 @@ from pathlib import Path -from app.custom_types import ParserSubgraph, SupportedTaxonomiesFunction -from app.profiling_functions._base import BaseMLProfiler +from app.custom_types import ParserSubgraph +from app.profiling_functions._base import BaseMLProfiler, Taxonomy steps_functions_mapping_path = Path( "./resources/taxonomies/extra/dspipelines_steps_functions_mapping.json" @@ -15,8 +15,8 @@ class DSPipelinesProfiler(BaseMLProfiler): - def __init__(self, python_content: str, taxonomy_name: SupportedTaxonomiesFunction): - super().__init__(python_content, taxonomy_name) + def __init__(self, python_content: str, taxonomy: Taxonomy): + super().__init__(python_content, taxonomy) def profile_subgraph( self, subgraph: ParserSubgraph, default_step: str diff --git a/app/profiling_functions/headergen.py b/app/profiling_functions/headergen.py index 8eb2125..5cfbf6f 100644 --- a/app/profiling_functions/headergen.py +++ b/app/profiling_functions/headergen.py @@ -2,14 +2,14 @@ from collections import Counter -from app.custom_types import ParserSubgraph, SupportedTaxonomiesFunction -from app.profiling_functions._base import BaseMLProfiler +from app.custom_types import ParserSubgraph +from app.profiling_functions._base import BaseMLProfiler, Taxonomy class HeaderGenProfiler(BaseMLProfiler): - def __init__(self, python_content: str, taxonomy_name: SupportedTaxonomiesFunction): - super().__init__(python_content, taxonomy_name) + def __init__(self, python_content: str, taxonomy: Taxonomy): + super().__init__(python_content, taxonomy) def profile_subgraph( self, subgraph: ParserSubgraph, default_step: str diff --git a/app/profiling_functions/llm.py b/app/profiling_functions/llm.py index 9e95a4e..cde69b2 100644 --- a/app/profiling_functions/llm.py +++ b/app/profiling_functions/llm.py @@ -12,10 +12,10 @@ from langfuse.openai import OpenAI except: from openai import OpenAI - from openai.types.chat import ChatCompletion +from openai.types.chat import ChatCompletion -from app.custom_types import ParserSubgraph, SupportedTaxonomiesFunction -from app.profiling_functions._base import BaseMLProfiler +from app.custom_types import ParserSubgraph +from app.profiling_functions._base import BaseMLProfiler, Taxonomy INFERENCE_API_URL = os.getenv("INFERENCE_API_URL", "mlprofiler_vllm:11434") @@ -28,14 +28,12 @@ class LLMProfiler(BaseMLProfiler): - def __init__(self, python_content: str, taxonomy_name: SupportedTaxonomiesFunction): - super().__init__(python_content, taxonomy_name) + def __init__(self, python_content: str, taxonomy: Taxonomy): + super().__init__(python_content, taxonomy) # loading the LLM system and user prompt templates system_prompt_template = env.get_template("system_prompt.jinja") - self.user_prompt_template = env.get_template( - f"user_prompt_{taxonomy_name}_taxonomy.jinja" - ) + self.user_prompt_template = env.get_template("user_prompt_taxonomy.jinja") # loading the LLM classification response schema classification_response_schema_template = env.get_template( @@ -62,8 +60,8 @@ def profile_subgraph( user_prompt_content = self.user_prompt_template.render( taxonomy=self.taxonomy, python_code_line=subgraph.source, - subgraph_library=subgraph.library, - subgraph_function=subgraph.function, + # subgraph_library=subgraph.library, + # subgraph_function=subgraph.function, ) completion: ChatCompletion = self.client.chat.completions.create( diff --git a/docker-compose.yml b/docker-compose.yml index 4b5fc1a..092e467 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -30,14 +30,8 @@ services: path: ./templates target: /mlprofiler-builder/templates/ initial_sync: true - healthcheck: - test: curl -f http://localhost:8081/health || exit 1 - interval: 5m - timeout: 3s - retries: 3 - start_period: 20s - depends_on: - - mlprofiler_vllm + # depends_on: + # - mlprofiler_vllm # mlprofiler_local_inference: # platform: linux/amd64 # build: ./ diff --git a/pyproject.toml b/pyproject.toml index 4d5e543..37ad7b4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,6 +7,7 @@ readme = "README.md" requires-python = ">=3.12.0,<4.0" dependencies = [ "fastapi[standard]>=0.120.2", + "httpx>=0.28.1", "jinja2>=3.1.6", "langfuse>=3.8.1", "numpy>=2.3.4", @@ -22,6 +23,3 @@ dev = [ "black>=25.9.0", "isort>=7.0.0", ] - -[tool.uv] -default-groups = [] diff --git a/resources/taxonomies/daswow_taxonomy.json b/resources/taxonomies/daswow_taxonomy.json index a21f23f..4dc1bb3 100644 --- a/resources/taxonomies/daswow_taxonomy.json +++ b/resources/taxonomies/daswow_taxonomy.json @@ -1,32 +1,65 @@ { - "helper_functions": [ - "helper_functions" - ], - "load_data": [ - "load_data" - ], - "data_preprocessing": [ - "data_preprocessing" - ], - "data_exploration": [ - "data_exploration" - ], - "modelling": [ - "modelling" - ], - "evaluation": [ - "evaluation" - ], - "prediction": [ - "prediction" - ], - "result_visualization": [ - "result_visualization" - ], - "save_results": [ - "save_results" - ], - "comment_only": [ - "comment_only" + "name": "daswow", + "elements": [ + { + "compatible_name": "helper_functions", + "original_name": "helper_functions", + "definition": "Code that is not directly related to the data science activity at hand, but provides useful scripting functions (e. g. importing or configuring libraries).", + "stage": "Layer 0" + }, + { + "compatible_name": "load_data", + "original_name": "load_data", + "definition": "The process of loading a dataset of any type (e.g., .csv, .pkl) into a Jupyter notebook environment.", + "stage": "Layer 0" + }, + { + "compatible_name": "data_preprocessing", + "original_name": "data_preprocessing", + "definition": "The process of preparing the dataset(s) for the subsequent analysis. It includes tasks such as cleaning, instance selection, normalisation, data transformation, and feature selection.", + "stage": "Layer 0" + }, + { + "compatible_name": "data_exploration", + "original_name": "data_exploration", + "definition": "The process of inspecting the content and shape of a dataset to understand the nature and characteristics of the data. Note that it may involve the usage of visualisation techniques but differs in its purpose.", + "stage": "Layer 0" + }, + { + "compatible_name": "modelling", + "original_name": "modelling", + "definition": "The process of applying statistical models and learning-based algorithms to learn from sample data.", + "stage": "Layer 0" + }, + { + "compatible_name": "evaluation", + "original_name": "evaluation", + "definition": "The process of assessing a model using one/various evaluation metric(s) such as goodness of fit and accuracy.", + "stage": "Layer 0" + }, + { + "compatible_name": "prediction", + "original_name": "prediction", + "definition": "The process of applying a model trained on a set of data to other or newly arriving pieces of data to forecast new values.", + "stage": "Layer 0" + }, + { + "compatible_name": "result_visualization", + "original_name": "result_visualization", + "definition": "The process of obtaining a graphical representation (e.g., tables, plots, graphs) of a/several measurement(s)", + "stage": "Layer 0" + }, + { + "compatible_name": "save_results", + "original_name": "save_results", + "definition": "The process of serialising and storing the data", + "stage": "Layer 0" + }, + { + "compatible_name": "comment_only", + "original_name": "comment_only", + "definition": "Lines of comment including commented code.", + "stage": "Layer 0" + } ] } \ No newline at end of file diff --git a/resources/taxonomies/dspipelines_taxonomy.json b/resources/taxonomies/dspipelines_taxonomy.json index ca25bac..e5e24f0 100644 --- a/resources/taxonomies/dspipelines_taxonomy.json +++ b/resources/taxonomies/dspipelines_taxonomy.json @@ -33,7 +33,7 @@ }, { "compatible_name": "Model Inference", - "original_name": "Model Prediction", + "original_name": "Prediction", "definition": "the code makes inference using a model", "stage": "Model Building Layer" }, diff --git a/templates/system_prompt.jinja b/templates/system_prompt.jinja index 7b39323..d4e20b0 100644 --- a/templates/system_prompt.jinja +++ b/templates/system_prompt.jinja @@ -1,4 +1,4 @@ -You are a data scientist expert in code classification and you always conform to the categories given by the user. +You are a code classification expert who is an experienced Data Scientist, with years of experience. You are analysing the following code: ```python diff --git a/templates/user_prompt_daswow_taxonomy.jinja b/templates/user_prompt_daswow_taxonomy.jinja deleted file mode 100644 index 1ade898..0000000 --- a/templates/user_prompt_daswow_taxonomy.jinja +++ /dev/null @@ -1,15 +0,0 @@ -The {{ steps_taxonomy|length }} categories are {{ steps_taxonomy }}. - -Each category is explained below: - -load_data should be used when loading new data. data_preprocessing should be used when data is being prepared so that it is suitable for further processing and analysis. data_exploration should be used when the data is being explored. modeling should be used when building or training a model. evaluation should be used when evaluating a model. prediction should be used when making new predictions using a model. result_visualization should be used when printing or visualizing results. save_results should be used when results are being saved. comment_only should be used when the line only contains comments. - -If you can't tell what it is, say Others. - -Code snippet: - -```python -{{ python_code_line }} -``` - -The classification for the given code snippet is: \ No newline at end of file diff --git a/templates/user_prompt_headergen_taxonomy.jinja b/templates/user_prompt_headergen_taxonomy.jinja deleted file mode 100644 index afcd95b..0000000 --- a/templates/user_prompt_headergen_taxonomy.jinja +++ /dev/null @@ -1,19 +0,0 @@ -The {{ steps_taxonomy|length }} categories are {{ steps_taxonomy }}. - -Each category is explained below: - -Library Loading should be used when importing a library, or importing a class or function from a library. Visualization should be used when printing or visualizing results. Data Loading should be used when loading new data. Exploratory Data Analysis should be used when doing EDA. Data Preparation should be used when data is being prepared so that it is suitable for further processing and analysis. Data Sub-sampling and Train-test Splitting should be used when splitting or sub-sampling a dataset. Feature Transformation should be used when transforming a feature. Feature Selection should be used when selectng a feature. Model Assembling modeling should be used when building a model. Model Parameter Tuning should be used when tuning the parameters of a model. Model Training should be used when training a model. Model Validation should be used when evaluating a model. - -If you can't tell what it is, say Others. - -Code snippet: - -```python -{{ python_code_line }} -``` - -Library: {{ subgraph_library }} - -Function: {{ subgraph_function }} - -The classification for the given code snippet is: \ No newline at end of file diff --git a/templates/user_prompt_dspipelines_taxonomy.jinja b/templates/user_prompt_taxonomy.jinja similarity index 96% rename from templates/user_prompt_dspipelines_taxonomy.jinja rename to templates/user_prompt_taxonomy.jinja index b0acb3c..237f38d 100644 --- a/templates/user_prompt_dspipelines_taxonomy.jinja +++ b/templates/user_prompt_taxonomy.jinja @@ -8,6 +8,6 @@ Among the following categories, which one applies to the code snippet: {% for taxonomy_element in taxonomy.elements if taxonomy_element.original_name != "Others" -%} - {{ taxonomy_element.compatible_name }}: {{ taxonomy_element.definition }} -{% endfor -%} +{% endfor %} If you can't tell what it is, say Others. 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Fri, 30 Jan 2026 11:46:29 +0100 Subject: [PATCH 04/45] docs(changelog): Update changelog with recent changes --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index ac33188..b72b07e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Parser metadata in JSON ML profile. - "dspipelines" parser +- External taxonomies support ## [0.3] - 2025-07-16 From 9c33175a345ddbb83c552170c5b0cd0bbaa937f2 Mon Sep 17 00:00:00 2001 From: Nicolas Lacroix Date: Fri, 30 Jan 2026 16:08:18 +0100 Subject: [PATCH 05/45] refactor(docker): Add docker-related files to docker/ and add grafana dashboard --- .dockerignore | 1 + .env | 10 - README.md | 7 +- data/student_a.ipynb | 818 --------- data/student_a_subgraph.json | 1376 --------------- docker/.env | 10 + Dockerfile => docker/Dockerfile | 0 Dockerfile.prod => docker/Dockerfile.prod | 0 docker/docker-compose-monitor-grafana.yml | 20 + .../docker-compose-monitor-langfuse.yml | 10 +- .../docker-compose.yml | 42 +- docker/grafana.json | 1527 +++++++++++++++++ docker/prometheus.yaml | 10 + resources/taxonomies/README.md | 61 - resources/taxonomies/daswow_taxonomy.json | 65 - .../taxonomies/dspipelines_taxonomy.json | 47 - resources/taxonomies/headergen_taxonomy.json | 27 - uv.lock | 130 +- 18 files changed, 1675 insertions(+), 2486 deletions(-) create mode 100644 .dockerignore delete mode 100644 .env delete mode 100644 data/student_a.ipynb delete mode 100644 data/student_a_subgraph.json create mode 100644 docker/.env rename Dockerfile => docker/Dockerfile (100%) rename Dockerfile.prod => docker/Dockerfile.prod (100%) create mode 100644 docker/docker-compose-monitor-grafana.yml rename docker-compose-monitor-local.yml => docker/docker-compose-monitor-langfuse.yml (97%) rename docker-compose.yml => docker/docker-compose.yml (73%) create mode 100644 docker/grafana.json create mode 100644 docker/prometheus.yaml delete mode 100644 resources/taxonomies/README.md delete mode 100644 resources/taxonomies/daswow_taxonomy.json delete mode 100644 resources/taxonomies/dspipelines_taxonomy.json delete mode 100644 resources/taxonomies/headergen_taxonomy.json diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 0000000..08a24d5 --- /dev/null +++ b/.dockerignore @@ -0,0 +1 @@ +demo/ \ No newline at end of file diff --git a/.env b/.env deleted file mode 100644 index e3d2dcc..0000000 --- a/.env +++ /dev/null @@ -1,10 +0,0 @@ -TAXONOMY_NAME=dspipelines -PROFILER_NAME=dspipelines - -LANGFUSE_SECRET_KEY= -LANGFUSE_PUBLIC_KEY= -LANGFUSE_HOST="http://langfuse-web:3000" - -LLM_MODEL_ID=Qwen/Qwen3-8B-AWQ -LLM_REASONING_PARSER=qwen3 -LLM_QUANTIZATION=awq \ No newline at end of file diff --git a/README.md b/README.md index 6ce8e55..aa1d452 100644 --- a/README.md +++ b/README.md @@ -10,6 +10,7 @@ The following docker compose commands deploy the mlprofiler API and vLLM instance: ```bash +$ cd docker $ docker compose --env-file .env build $ docker compose --env-file .env up ``` @@ -17,5 +18,9 @@ $ docker compose --env-file .env up It is also possible to deploy the LLM monitoring platform (Langfuse) as follows: ```bash -$ docker compose --file docker-compose-monitor-local.yml up +$ cd docker +# see https://langfuse.com/docs +$ docker compose --file docker-compose-monitor-langfuse.yml up +# see https://github.com/vllm-project/vllm/tree/main/examples/online_serving/prometheus_grafana#prometheus-and-grafana +$ docker compose --file docker-compose-monitor-grafana.yml up ``` diff --git a/data/student_a.ipynb b/data/student_a.ipynb deleted file mode 100644 index 03973f7..0000000 --- a/data/student_a.ipynb +++ /dev/null @@ -1,818 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "# Sentiment analysis with an MLP and BOW representation" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "## Imports" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:53:44.910524Z", - "start_time": "2022-10-12T12:53:44.898708Z" - } - }, - "outputs": [], - "source": [ - "import ssl\n", - "ssl._create_default_https_context = ssl._create_unverified_context" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:53:45.512632Z", - "start_time": "2022-10-12T12:53:45.507753Z" - } - }, - "outputs": [], - "source": [ - "import warnings\n", - "warnings.filterwarnings('ignore')" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:54:03.325657Z", - "start_time": "2022-10-12T12:53:46.023244Z" - }, - "id": "vEgOX76J5RwL" - }, - "outputs": [], - "source": [ - "import os\n", - "import numpy as np\n", - "import matplotlib.pyplot as plt\n", - "import seaborn as sns\n", - "import pandas as pd\n", - "import time" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:54:05.131352Z", - "start_time": "2022-10-12T12:54:03.353326Z" - } - }, - "outputs": [], - "source": [ - "from sklearn import set_config\n", - "set_config(display=\"diagram\")\n", - "\n", - "from sklearn.model_selection import train_test_split\n", - "\n", - "from sklearn.pipeline import Pipeline\n", - "from sklearn.feature_extraction.text import CountVectorizer, TfidfVectorizer\n", - "from sklearn.preprocessing import OneHotEncoder\n", - "\n", - "from sklearn.linear_model import LogisticRegression\n", - "from sklearn.metrics import classification_report, confusion_matrix, f1_score, accuracy_score\n", - "\n", - "from sklearn.model_selection import GridSearchCV, RandomizedSearchCV" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:54:09.055834Z", - "start_time": "2022-10-12T12:54:05.208739Z" - } - }, - "outputs": [], - "source": [ - "import nltk\n", - "from nltk import word_tokenize, sent_tokenize \n", - "from nltk.stem import PorterStemmer\n", - "from nltk import FreqDist" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:54:48.447022Z", - "start_time": "2022-10-12T12:54:09.081333Z" - } - }, - "outputs": [], - "source": [ - "import tensorflow as tf\n", - "import keras_tuner as kt\n", - "from tensorflow.keras.models import Model\n", - "from tensorflow.keras import layers, callbacks, utils" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "## Load the dataset" - ] - }, - { - "cell_type": "markdown", - "metadata": { - "id": "_vlbVhVpvq_s" - }, - "source": [ - "* **Training Dataset:** The sample of data used to fit the model.\n", - "* **Validation Dataset:** The sample of data used to provide an unbiased evaluation of a model fit on the training dataset while tuning model hyperparameters. The evaluation becomes more biased as skill on the validation dataset is incorporated into the model configuration.\n", - "* **Test Dataset:** The sample of data used to provide an unbiased evaluation of a final model fit on the training dataset." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:54:50.078178Z", - "start_time": "2022-10-12T12:54:48.452355Z" - }, - "colab": { - "base_uri": "https://localhost:8080/", - "height": 204 - }, - "executionInfo": { - "elapsed": 2638, - "status": "ok", - "timestamp": 1634734106855, - "user": { - "displayName": "Antoine Collin", - "photoUrl": "https://lh3.googleusercontent.com/a/default-user=s64", - "userId": "01107865217976062482" - }, - "user_tz": -120 - }, - "id": "MLWzp9CAvq_t", - "outputId": "abb836f6-8137-43a7-decb-f1d7a8a981be" - }, - "outputs": [], - "source": [ - "TRAIN = pd.read_csv(\"http://www.i3s.unice.fr/~riveill/dataset/Amazon_Unlocked_Mobile/train.csv.gz\")\n", - "VAL = pd.read_csv(\"http://www.i3s.unice.fr/~riveill/dataset/Amazon_Unlocked_Mobile/val.csv.gz\")\n", - "TEST = pd.read_csv(\"http://www.i3s.unice.fr/~riveill/dataset/Amazon_Unlocked_Mobile/test.csv.gz\")\n", - "\n", - "TRAIN.head()" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "As I'm going to be doing cross validation, I'm going to merge the train part and the val part." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "# I chose to merge TRAIN and VAL\n", - "TRAIN = pd.concat([TRAIN, VAL], axis=0)\n", - "TRAIN.shape, TEST.shape" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "# I choose to replace missing review by empty one\n", - "TRAIN = TRAIN.fillna(\"\")\n", - "TEST = TEST.fillna(\"\")" - ] - }, - { - "cell_type": "markdown", - "metadata": { - "id": "o2eC1L4fvq_0" - }, - "source": [ - "## Build X (features vectors) and y (labels)" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:57:10.769051Z", - "start_time": "2022-10-12T12:57:10.631394Z" - }, - "colab": { - "base_uri": "https://localhost:8080/" - }, - "executionInfo": { - "elapsed": 284, - "status": "ok", - "timestamp": 1634738820951, - "user": { - "displayName": "Antoine Collin", - "photoUrl": "https://lh3.googleusercontent.com/a/default-user=s64", - "userId": "01107865217976062482" - }, - "user_tz": -120 - }, - "id": "dOnscXEBvq_0", - "outputId": "4364f457-545c-49d3-c2fe-5540d52b0f58" - }, - "outputs": [], - "source": [ - "# Construct X_train and y_train\n", - "X_train = np.array(TRAIN['Reviews']).reshape(-1,1)\n", - "y_train = np.array(TRAIN['Rating']-np.min(TRAIN['Rating'])).reshape(-1,1)\n", - "X_train.shape, y_train.shape" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:57:11.822545Z", - "start_time": "2022-10-12T12:57:11.779828Z" - }, - "colab": { - "base_uri": "https://localhost:8080/" - }, - "executionInfo": { - "elapsed": 6, - "status": "ok", - "timestamp": 1634738821203, - "user": { - "displayName": "Antoine Collin", - "photoUrl": "https://lh3.googleusercontent.com/a/default-user=s64", - "userId": "01107865217976062482" - }, - "user_tz": -120 - }, - "id": "338OMkmHvq_1", - "outputId": "aea649ad-4a81-4aa7-976f-4b97c3461644" - }, - "outputs": [], - "source": [ - "# Construct X_test and y_test\n", - "X_test = np.array(TEST['Reviews']).reshape(-1,1)\n", - "y_test = np.array(TEST['Rating']-np.min(TRAIN['Rating'])).reshape(-1,1)\n", - "X_test.shape, y_test.shape" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "assert np.min(y_train)==0\n", - "assert np.min(y_test)==0" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:57:12.344115Z", - "start_time": "2022-10-12T12:57:12.330335Z" - } - }, - "outputs": [], - "source": [ - "del TRAIN, VAL, TEST" - ] - }, - { - "cell_type": "markdown", - "metadata": { - "id": "RR3A2Imxvq_v" - }, - "source": [ - "## Very small EDA (Exploratory Data Analysis)\n", - "\n", - "To choose certain constants (size of vocabulary, length of a line, etc.), it is good to know the dataset used.\n", - "\n", - "You can also add new features to the dataset." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": { - "ExecuteTime": { - "end_time": "2022-10-12T12:54:57.879689Z", - "start_time": "2022-10-12T12:54:50.184619Z" - }, - "colab": { - "base_uri": "https://localhost:8080/" - }, - "executionInfo": { - "elapsed": 2186, - "status": "ok", - "timestamp": 1634738626074, - "user": { - "displayName": "Antoine Collin", - "photoUrl": "https://lh3.googleusercontent.com/a/default-user=s64", - "userId": "01107865217976062482" - }, - "user_tz": -120 - }, - "id": "_nfBsi81vq_w", - "outputId": "190bea69-e01d-498d-da18-7399cc9b125d" - }, - "outputs": [], - "source": [ - "# What is the vocabulary size ?\n", - "\n", - "# Tokenized the reviews\n", - "reviews_tokenized = [word_tokenize(review) for review in X_train.ravel()]\n", - "\n", - "# Count the vocabulary\n", - "flatten_reviews = [item for sublist in reviews_tokenized for item in sublist]\n", - "vocabulary_size = len(set(flatten_reviews))\n", - "vocabulary_size" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "# Initialize max_length with 90 % of the review not truncated\n", - "from nltk import FreqDist\n", - "\n", - "n = 0.90 # 90 % of reviews are not truncated\n", - "lengths = [len(txt.split()) for txt in X_train.ravel()]\n", - "lengths_fdist = FreqDist(lengths) \n", - "first_25 = FreqDist(dict(lengths_fdist.most_common()[:25]))\n", - "first_25.plot()\n", - "\n", - "cumul = 0\n", - "for length in range(max(lengths)):\n", - " cumul += lengths_fdist[length]\n", - " if cumul>=n*len(X_train):\n", - " break\n", - "\n", - "max_len = length\n", - "max_len # With this length, 90% of reviews are not truncated" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "# Intialize vocab_size in order to keep words that frequency is more than 1 %% of the sentence\n", - "from nltk import FreqDist\n", - "\n", - "fdist = FreqDist([w for txt in X_train.ravel() for w in txt.split()]) \n", - "first_25 = FreqDist(dict(fdist.most_common()[:25]))\n", - "first_25.plot()\n", - "\n", - "threshold = 0.001 * len(X_train) # We keep all the words that appear in at least 1 %% of the number of documents\n", - "\n", - "for i, (word, nb) in enumerate(fdist.most_common()):\n", - " if nb