diff --git a/tools/matchms/matchms_networking.xml b/tools/matchms/matchms_networking.xml index def65609..89d763e2 100644 --- a/tools/matchms/matchms_networking.xml +++ b/tools/matchms/matchms_networking.xml @@ -1,4 +1,4 @@ - + create similarity network graph from matchms similarity scores @@ -17,7 +17,19 @@ @@ -25,24 +37,6 @@ \$_GALAXY_JOB_TMP_DIR - - - python3 ${__tool_directory__}/matchms_networking_wrapper.py \ - --score_name '${score_layer_name}' \ - --graph_format '$graph_format' \ - --identifier '$identifier_key' \ - --top_n '$top_n' \ - --max_links '$max_links' \ - --score_cutoff '$score_cutoff' \ - --link_method '$link_method' \ - #if $keep_unconnected_nodes - --keep_unconnected_nodes \ - #end if - '$scores' \ - '$similarity_network_file' - - - @@ -90,6 +84,19 @@ + + + + + + + + + + + + +