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Copy pathmodules.json
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151 lines (151 loc) · 6.67 KB
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{
"name": "nf-core/nanometaepigenomics",
"homePage": "https://github.com/nf-core/nanometaepigenomics",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"abricate/run": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"amrfinderplus/run": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"bakta/bakta": {
"branch": "master",
"git_sha": "2080397432fcb0d079121dbacf22ce42ef175cec",
"installed_by": ["modules"]
},
"checkm2/databasedownload": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"checkm2/predict": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"filtlong": {
"branch": "master",
"git_sha": "83819fff250f4fe6747fd8855fb3039eea22e5b7",
"installed_by": ["modules"]
},
"flye": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"genomad/endtoend": {
"branch": "master",
"git_sha": "781f2625386fe0bf2f337c7b99f56e618c59fc99",
"installed_by": ["modules"]
},
"gtdbtk/classifywf": {
"branch": "master",
"git_sha": "b581ebb37c529fa07e22c38d128a7c5c273ed286",
"installed_by": ["modules"]
},
"metabat2/jgisummarizebamcontigdepths": {
"branch": "master",
"git_sha": "5be91832f7c6a2d229f900a239d9532c9ae133c7",
"installed_by": ["modules"]
},
"metabat2/metabat2": {
"branch": "master",
"git_sha": "5be91832f7c6a2d229f900a239d9532c9ae133c7",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "135d883a43b1a2324b4112cd270cf22e20835533",
"installed_by": ["modules"]
},
"minimap2/index": {
"branch": "master",
"git_sha": "135d883a43b1a2324b4112cd270cf22e20835533",
"installed_by": ["modules"]
},
"modkit/callmods": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"modkit/pileup": {
"branch": "master",
"git_sha": "924e729cc75be5ab9ff8d37c8e7c2edfb36a8ce5",
"installed_by": ["modules"]
},
"mosdepth": {
"branch": "master",
"git_sha": "999b9db1d6b8bdc591e1168e183f4cc87d6606f9",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "98403d15b0e50edae1f3fec5eae5e24982f1fade",
"installed_by": ["modules"]
},
"nanoplot": {
"branch": "master",
"git_sha": "cc4d441624bd2a0db697502bdde9005a5a5f0b36",
"installed_by": ["modules"]
},
"plasmidfinder": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"porechop/abi": {
"branch": "master",
"git_sha": "4aceeffaed1eaa12c0e198b166f898e91e4e781d",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["modules"]
},
"semibin/singleeasybin": {
"branch": "master",
"git_sha": "9f8642c41bf67d2787820e4c4aa34c0356a0d464",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "a3fb7351b1fdb2b1de282b765816bbea190e86a8",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "a7b27fd25bfa8dcc07d299e88bd790585901a436",
"installed_by": ["subworkflows"]
}
}
}
}
}
}