diff --git a/.github/workflows/build-preview.yaml b/.github/workflows/build-preview.yaml deleted file mode 100644 index fee6ea07..00000000 --- a/.github/workflows/build-preview.yaml +++ /dev/null @@ -1,58 +0,0 @@ -name: build-preview -run-name: build pull request preview - -on: - # run when called from another workflow - workflow_call: - - # run if user manually requests it - workflow_dispatch: - -# variables -env: - PREVIEWS_FOLDER: preview - -permissions: - contents: write - pull-requests: write - -jobs: - build-preview: - runs-on: ubuntu-latest - - steps: - # for debugging - - uses: crazy-max/ghaction-dump-context@v2 - - - name: Checkout branch contents - uses: actions/checkout@v4 - with: - repository: ${{ github.event.pull_request.head.repo.full_name }} - ref: ${{ github.head_ref }} - - - name: Install Ruby packages - if: github.event.action != 'closed' - uses: ruby/setup-ruby@v1 - with: - ruby-version: "3.1" - bundler-cache: true - - - name: Get Pages url - if: github.event.action != 'closed' - id: pages - uses: actions/configure-pages@v4 - - # for debugging - - if: runner.debug == '1' - uses: mxschmitt/action-tmate@v3 - - - name: Build preview version of site - if: github.event.action != 'closed' - run: | - JEKYLL_ENV=production bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path || '' }}/${{ env.PREVIEWS_FOLDER }}/pr-${{ github.event.number }}" - - - name: Commit preview to Pages branch - uses: rossjrw/pr-preview-action@v1.4.7 - with: - source-dir: _site - umbrella-dir: ${{ env.PREVIEWS_FOLDER }} diff --git a/.github/workflows/on-pull-request.yml b/.github/workflows/on-pull-request.yml index 5cdf21a2..4ea1686c 100644 --- a/.github/workflows/on-pull-request.yml +++ b/.github/workflows/on-pull-request.yml @@ -1,22 +1,128 @@ name: on-pull-request run-name: on pull request activity +# Uses `pull_request` (not `pull_request_target`), so PRs from forks are +# built with their own code but never get write access to this repo. The +# post-artifact job works for every PR, including forks. The live-preview +# job needs `contents: write` to push to gh-pages, so it only runs for +# same-repo PRs. +# +# Note: PRs opened by the weekly citation-update job (using GITHUB_TOKEN) +# don't trigger this workflow at all, so those PRs won't get a preview. +# That's expected -- review the citation diff directly instead. on: - pull_request_target: + pull_request: types: - opened - reopened - synchronize - closed -permissions: - contents: write - pull-requests: write +env: + PREVIEWS_FOLDER: preview jobs: - update-citations: - uses: ./.github/workflows/update-citations.yaml + build: + if: github.event.action != 'closed' + runs-on: ubuntu-latest + permissions: + contents: read - build-preview: - needs: update-citations - uses: ./.github/workflows/build-preview.yaml + steps: + - name: Checkout PR contents + uses: actions/checkout@v4 + + - name: Install Ruby packages + uses: ruby/setup-ruby@v1 + with: + ruby-version: "3.1" + bundler-cache: true + + - name: Get Pages url + id: pages + uses: actions/configure-pages@v4 + + # Jekyll writes root-absolute links (//...), so each copy has + # to be built for the path it will be served from. + + # downloadable copy: served from the root by a local web server + - name: Build downloadable version of site + run: | + JEKYLL_ENV=production bundle exec jekyll build --baseurl "" --destination _site_download + + - name: Upload downloadable site as artifact + uses: actions/upload-artifact@v4 + with: + name: site-preview + path: _site_download + retention-days: 14 + + # live copy: served from gh-pages under /preview/pr-N/ + - name: Build live preview version of site + run: | + JEKYLL_ENV=production bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path || '' }}/${{ env.PREVIEWS_FOLDER }}/pr-${{ github.event.number }}" + + - name: Upload live preview site as artifact + uses: actions/upload-artifact@v4 + with: + name: site-live-preview + path: _site + retention-days: 1 + + post-artifact: + needs: build + if: github.event.action != 'closed' + runs-on: ubuntu-latest + permissions: + actions: read + pull-requests: write + + steps: + - name: Post link to built site artifact + uses: CDCgov/cfa-actions/post-artifact@v1.7.0 + with: + artifact-name: site-preview + gh-token: ${{ secrets.GITHUB_TOKEN }} + message: | + Thanks for the PR, @${{ github.actor }}! The built site is ready for download :point_right: [here]({ artifact-url }) :point_left: + + Opening `index.html` directly from disk won't load styles or images. Unzip it and serve the folder instead: + + ```bash + python3 -m http.server --directory site-preview 8000 + ``` + + then open http://localhost:8000. If a live preview link is posted below, you can use that instead. + + live-preview: + needs: build + # `build` is skipped when the PR is closed (nothing to build), so this + # job's own condition must not simply inherit that skip; run whenever + # `build` succeeded, or the PR was just closed (to remove the preview). + # Only for PRs from this repo: pushing to gh-pages needs write access, + # which forked PRs don't get. + if: | + always() && + (needs.build.result == 'success' || github.event.action == 'closed') && + github.event.pull_request.head.repo.full_name == github.repository + runs-on: ubuntu-latest + permissions: + contents: write + pull-requests: write + + steps: + - name: Checkout branch contents + uses: actions/checkout@v4 + + - name: Download built site artifact + if: github.event.action != 'closed' + uses: actions/download-artifact@v8 + with: + name: site-live-preview + path: _site + + - name: Deploy or remove live preview + uses: rossjrw/pr-preview-action@v1.8.1 + with: + source-dir: _site + umbrella-dir: ${{ env.PREVIEWS_FOLDER }} diff --git a/.github/workflows/on-schedule.yaml b/.github/workflows/on-schedule.yaml index ad1fe95a..74598d02 100644 --- a/.github/workflows/on-schedule.yaml +++ b/.github/workflows/on-schedule.yaml @@ -3,8 +3,8 @@ run-name: on schedule on: schedule: - # weekly - - cron: "0 0 * * 1" + # weekly, Monday 12:00 UTC -- after InsightNet's Sunday 06:23 UTC refresh + - cron: "0 12 * * 1" # run if user manually requests it workflow_dispatch: @@ -20,8 +20,3 @@ jobs: uses: ./.github/workflows/update-citations.yaml with: open-pr: true - - build-preview: - needs: update-citations - if: needs.update-citations.outputs.changed == 'true' - uses: ./.github/workflows/build-preview.yaml diff --git a/.github/workflows/update-citations.yaml b/.github/workflows/update-citations.yaml index f6ff6ec2..77e66c78 100644 --- a/.github/workflows/update-citations.yaml +++ b/.github/workflows/update-citations.yaml @@ -20,7 +20,6 @@ permissions: env: FORCE_COLOR: true - GOOGLE_SCHOLAR_API_KEY: ${{ secrets.GOOGLE_SCHOLAR_API_KEY }} jobs: update-citations: @@ -52,8 +51,8 @@ jobs: - if: runner.debug == '1' uses: mxschmitt/action-tmate@v3 - - name: Build updated citations - run: python _cite/cite.py + - name: Build updated citations from InsightNet + run: python _cite/insightnet.py timeout-minutes: 15 - name: Check if citations changed diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db deleted file mode 100644 index fbef06c7..00000000 Binary files a/_cite/.cache/cache.db and /dev/null differ diff --git a/_cite/cite.py b/_cite/cite.py deleted file mode 100644 index 6cd5befc..00000000 --- a/_cite/cite.py +++ /dev/null @@ -1,188 +0,0 @@ -""" -cite process to convert sources and metasources into full citations -""" - -import traceback -from importlib import import_module -from pathlib import Path -from dotenv import load_dotenv -from util import * - - -# load environment variables -load_dotenv() - - -# error flag -error = False - -# output citations file -output_file = "_data/citations.yaml" - - -log() - -log("Compiling sources") - -# compiled list of sources -sources = [] - -# in-order list of plugins to run -plugins = ["google-scholar", "pubmed", "orcid", "sources"] - -# loop through plugins -for plugin in plugins: - # convert into path object - plugin = Path(f"plugins/{plugin}.py") - - log(f"Running {plugin.stem} plugin") - - # get all data files to process with current plugin - files = Path.cwd().glob(f"_data/{plugin.stem}*.*") - files = list(filter(lambda p: p.suffix in [".yaml", ".yml", ".json"], files)) - - log(f"Found {len(files)} {plugin.stem}* data file(s)", 1) - - # loop through data files - for file in files: - log(f"Processing data file {file.name}", 1) - - # load data from file - try: - data = load_data(file) - # check if file in correct format - if not list_of_dicts(data): - raise Exception("File not a list of dicts") - except Exception as e: - log(e, 2, "ERROR") - error = True - continue - - # loop through data entries - for index, entry in enumerate(data): - log(f"Processing entry {index + 1} of {len(data)}, {label(entry)}", 2) - - # run plugin on data entry to expand into multiple sources - try: - expanded = import_module(f"plugins.{plugin.stem}").main(entry) - # check that plugin returned correct format - if not list_of_dicts(expanded): - raise Exception("Plugin didn't return list of dicts") - # catch any plugin error - except Exception as e: - # log detailed pre-formatted/colored trace - print(traceback.format_exc()) - # log high-level error - log(e, 3, "ERROR") - error = True - continue - - # loop through sources - for source in expanded: - if plugin.stem != "sources": - log(label(source), 3) - - # include meta info about source - source["plugin"] = plugin.name - source["file"] = file.name - - # add source to compiled list - sources.append(source) - - if plugin.stem != "sources": - log(f"{len(expanded)} source(s)", 3) - - -log("Merging sources by id") - -# merge sources with matching (non-blank) ids -for a in range(0, len(sources)): - a_id = get_safe(sources, f"{a}.id", "") - if not a_id: - continue - for b in range(a + 1, len(sources)): - b_id = get_safe(sources, f"{b}.id", "") - if b_id == a_id: - log(f"Found duplicate {b_id}", 2) - sources[a].update(sources[b]) - sources[b] = {} -sources = [entry for entry in sources if entry] - - -log(f"{len(sources)} total source(s) to cite") - - -log() - -log("Generating citations") - -# list of new citations -citations = [] - - -# loop through compiled sources -for index, source in enumerate(sources): - log(f"Processing source {index + 1} of {len(sources)}, {label(source)}") - - # if explicitly flagged, remove/ignore entry - if get_safe(source, "remove", False) == True: - continue - - # new citation data for source - citation = {} - - # source id - _id = get_safe(source, "id", "").strip() - - # Manubot doesn't work without an id - if _id: - log("Using Manubot to generate citation", 1) - - try: - # run Manubot and set citation - citation = cite_with_manubot(_id) - - # if Manubot cannot cite source - except Exception as e: - # if regular source (id entered by user), throw error - if get_safe(source, "plugin", "") == "sources.py": - log(e, 3, "ERROR") - error = True - # otherwise, if from metasource (id retrieved from some third-party API), just warn - else: - log(e, 3, "WARNING") - # discard source from citations - continue - - # preserve fields from input source, overriding existing fields - citation.update(source) - - # ensure date in proper format for correct date sorting - if get_safe(citation, "date", ""): - citation["date"] = format_date(get_safe(citation, "date", "")) - - # add new citation to list - citations.append(citation) - - -log() - -log("Saving updated citations") - - -# save new citations -try: - save_data(output_file, citations) -except Exception as e: - log(e, level="ERROR") - error = True - - -# exit at end, so user can see all errors in one run -if error: - log("Error(s) occurred above", level="ERROR") - exit(1) -else: - log("All done!", level="SUCCESS") - -log("\n") diff --git a/_cite/import_members.py b/_cite/import_members.py new file mode 100644 index 00000000..304eb132 --- /dev/null +++ b/_cite/import_members.py @@ -0,0 +1,198 @@ +""" +One-time import: fill in missing _members/*.md link fields (and empty bios) +from InsightNet's config/organizations/foresite.toml. + +This is NOT wired into CI. Run it once locally, review the diff, and commit +the result: + + python _cite/import_members.py [--toml ../insightnet-ai/config/organizations/foresite.toml] + +It only ADDS values -- an existing links.* entry, or a non-empty bio, is +never overwritten. Researchers in the TOML with no matching _members/*.md +file are printed as a report at the end (e.g. Olivia Banks has no ForeSITE +Website page yet) so a decision can be made about adding one. +""" + +import argparse +import re +import tomllib +from pathlib import Path + +import yaml + +REPO_ROOT = Path(__file__).resolve().parent.parent +MEMBERS_DIR = REPO_ROOT / "_members" +DEFAULT_TOML = REPO_ROOT.parent / "insightnet-ai" / "config" / "organizations" / "foresite.toml" + +ORCID_RE = re.compile(r"(\d{4}-\d{4}-\d{4}-\d{3}[\dX])") +MEMBER_PAGE_RE = re.compile(r"ForeSITE_Website/members/([^/]+)\.html", re.IGNORECASE) + +# manual overrides for researchers whose TOML full_name doesn't exactly +# match the member file's `name:` front matter (a pre-existing typo in the +# member file, left untouched here) +NAME_OVERRIDES = { + "yue-zhang": "Yue_Xhang.md", +} + + +def normalize(name): + # strip parentheticals ("Nathorn (Nui) Chaiyakunapruk") and collapse space + clean = re.sub(r"\([^)]*\)", " ", name) + return re.sub(r"\s+", " ", clean).strip().lower() + + +def load_members(): + """Return {filename: (front_matter_dict, body_text)} for every member page.""" + members = {} + for path in MEMBERS_DIR.glob("*.md"): + text = path.read_text() + parts = text.split("---", 2) + if len(parts) < 3: + print(f"WARNING: {path.name} has no parseable front matter, skipping") + continue + front = yaml.safe_load(parts[1]) or {} + body = parts[2] + members[path.name] = (front, body, path) + return members + + +def find_member_file(researcher, members): + website = researcher.get("website") or "" + m = MEMBER_PAGE_RE.search(website) + if m: + slug = m.group(1) + for filename in members: + if filename[:-3].lower() == slug.lower(): + return filename + + rid = researcher.get("id") + if rid in NAME_OVERRIDES: + override = NAME_OVERRIDES[rid] + if override in members: + return override + + target = normalize(researcher["full_name"]) + for filename, (front, _, _) in members.items(): + if front.get("name") and normalize(front["name"]) == target: + return filename + + return None + + +def extract_link_fields(researcher): + """Return {links key: value} to add, per the mapping in types.yaml.""" + fields = {} + + orcid_url = researcher.get("orcid") + if orcid_url: + m = ORCID_RE.search(orcid_url) + if m: + fields["orcid"] = m.group(1) + + scholar = researcher.get("google_scholar") + if scholar: + m = re.search(r"[?&]user=([^&]+)", scholar) + if m: + fields["google-scholar"] = m.group(1) + + linkedin = researcher.get("linkedin") + if linkedin: + m = re.search(r"linkedin\.com/in/([^/?#]+)", linkedin) + if m: + fields["linkedin"] = m.group(1).rstrip("/") + + github = researcher.get("github") + if github: + m = re.search(r"github\.com/([^/?#]+)", github) + if m: + fields["github"] = m.group(1) + + bluesky = researcher.get("bluesky") + if bluesky: + fields["bluesky"] = bluesky + + website = researcher.get("website") + if website and not MEMBER_PAGE_RE.search(website): + fields["home-page"] = website + + return fields + + +def update_member(front, body, researcher): + """Mutate front (in place) and return possibly-updated body. Returns + True if anything changed.""" + changed = False + + links = front.get("links") + if not isinstance(links, dict): + links = {} + new_fields = extract_link_fields(researcher) + for key, value in new_fields.items(): + if key not in links or not links[key]: + links[key] = value + changed = True + if links: + front["links"] = links + + bio = researcher.get("bio") + if bio and len(body.strip()) < 20: + body = "\n" + bio.strip() + "\n" + changed = True + + return changed, body + + +class IndentDumper(yaml.Dumper): + """Indent block-sequence items under their parent key (PyYAML's default + dumper aligns list items with the key instead), matching the existing + member file style.""" + + def increase_indent(self, flow=False, indentless=False): + return super().increase_indent(flow, False) + + +def dump_front_matter(front): + IndentDumper.ignore_aliases = lambda *args: True + return yaml.dump( + front, Dumper=IndentDumper, default_flow_style=False, sort_keys=False, allow_unicode=True + ) + + +def main(): + parser = argparse.ArgumentParser() + parser.add_argument("--toml", default=str(DEFAULT_TOML)) + args = parser.parse_args() + + researchers = tomllib.loads(Path(args.toml).read_text())["organization"]["researchers"] + members = load_members() + + unmatched = [] + updated_files = [] + + for researcher in researchers: + filename = find_member_file(researcher, members) + if not filename: + unmatched.append(researcher["full_name"]) + continue + + front, body, path = members[filename] + changed, body = update_member(front, body, researcher) + if changed: + # `body` already starts with the newline that followed the + # original closing "---", so don't add another one here + new_text = "---\n" + dump_front_matter(front) + "---" + body + path.write_text(new_text) + updated_files.append(filename) + + print(f"Updated {len(updated_files)} member file(s):") + for f in sorted(updated_files): + print(f" {f}") + + if unmatched: + print(f"\n{len(unmatched)} researcher(s) with no matching _members/*.md file:") + for name in unmatched: + print(f" {name}") + + +if __name__ == "__main__": + main() diff --git a/_cite/insightnet.py b/_cite/insightnet.py new file mode 100644 index 00000000..83798a85 --- /dev/null +++ b/_cite/insightnet.py @@ -0,0 +1,242 @@ +""" +Build _data/citations.yaml from the InsightNet Explorer publications dataset. + +InsightNet (https://github.com/EpiForeSITE/insightnet-explorer) collects +publications for every ForeSITE-network researcher weekly from ORCID, Europe +PMC, PubMed, arXiv and Crossref, and publishes the merged result as +data/works.json + data/works-details.json. This script downloads (or reads +locally) those two files plus config/organizations/foresite.toml, keeps only +the works tagged for ForeSITE, and reshapes them into the citation schema +that _includes/citation.html already understands. + +The hand-curated "featured" list in _data/sources.yaml is preserved: every +featured id is looked up in the InsightNet data, and if it isn't there (for +example, a very old paper InsightNet hasn't (re)collected), the existing +record already in _data/citations.yaml is carried over unchanged so nothing +featured ever silently disappears. + +Usage: + python _cite/insightnet.py # fetch from GitHub + python _cite/insightnet.py --local ../insightnet-ai/data # use local copy +""" + +import argparse +import json +import re +import sys +import tomllib +import urllib.request +from pathlib import Path + +import yaml + +REPO_ROOT = Path(__file__).resolve().parent.parent +OUTPUT_FILE = REPO_ROOT / "_data" / "citations.yaml" +SOURCES_FILE = REPO_ROOT / "_data" / "sources.yaml" + +RAW_BASE = "https://raw.githubusercontent.com/EpiForeSITE/insightnet-explorer/main" +WORKS_URL = f"{RAW_BASE}/data/works.json" +DETAILS_URL = f"{RAW_BASE}/data/works-details.json" +TOML_URL = f"{RAW_BASE}/config/organizations/foresite.toml" + +ORGANIZATION_ID = "foresite" + +# InsightNet work "type" -> the type keys defined in _data/types.yaml +TYPE_MAP = { + "article": "paper", + "preprint": "preprint", +} + +ORCID_RE = re.compile(r"(\d{4}-\d{4}-\d{4}-\d{3}[\dX])") + + +def fetch_json(url): + with urllib.request.urlopen(url) as response: + return json.load(response) + + +def fetch_text(url): + with urllib.request.urlopen(url) as response: + return response.read().decode("utf-8") + + +def load_data(args): + """Return (works, details, researchers) from --local dir or GitHub.""" + if args.local: + local = Path(args.local) + works = json.loads((local / "works.json").read_text()) + details = json.loads((local / "works-details.json").read_text()) + toml_path = local.parent / "config" / "organizations" / "foresite.toml" + researchers = tomllib.loads(toml_path.read_text()) + else: + works = fetch_json(WORKS_URL) + details = fetch_json(DETAILS_URL) + researchers = tomllib.loads(fetch_text(TOML_URL)) + + researcher_list = researchers["organization"]["researchers"] + return works["works"], details["details"], researcher_list + + +def build_researcher_index(researchers): + """Map researcher id -> (full_name, last_name, first_initial, orcid).""" + index = {} + for r in researchers: + full_name = r["full_name"] + # strip parentheticals, e.g. "Nathorn (Nui) Chaiyakunapruk" + clean = re.sub(r"\([^)]*\)", " ", full_name) + tokens = clean.split() + if not tokens: + continue + last_name = tokens[-1] + first_initial = tokens[0][0].upper() + orcid = None + if r.get("orcid"): + m = ORCID_RE.search(r["orcid"]) + if m: + orcid = m.group(1) + rid = r.get("id") + if rid: + index[rid] = { + "full_name": full_name, + "last_name": last_name, + "first_initial": first_initial, + "orcid": orcid, + } + return index + + +def bold_member_authors(author_names, work, details, researcher_index): + """Return author name list with ForeSITE-member names wrapped in **bold**.""" + author_records = details.get("authors", []) if details else [] + if not author_records: + return author_names + + # candidate ForeSITE researchers tied to this specific work + candidates = [ + researcher_index[rid] + for rid in work.get("researcher_ids", []) + if rid in researcher_index + ] + if not candidates: + return author_names + + orcid_lookup = {c["orcid"]: c for c in candidates if c["orcid"]} + + bolded = [] + for i, name in enumerate(author_names): + record = author_records[i] if i < len(author_records) else {} + is_member = False + + author_orcid = (record or {}).get("orcid") or "" + if author_orcid and author_orcid in orcid_lookup: + is_member = True + else: + tokens = [t.upper().rstrip(".") for t in re.split(r"[\s,]+", name) if t] + for c in candidates: + last_upper = c["last_name"].upper() + if last_upper in tokens: + others = [t for t in tokens if t != last_upper] + if any(t[:1] == c["first_initial"] for t in others if t): + is_member = True + break + + bolded.append(f"**{name}**" if is_member else name) + return bolded + + +def work_id(work): + if work.get("doi"): + return f"doi:{work['doi'].lower()}" + if work.get("pmid"): + return f"pmid:{work['pmid']}" + if work.get("arxiv_id"): + return f"arxiv:{work['arxiv_id']}" + return f"insightnet:{work['id']}" + + +def build_citation(work, details, researcher_index): + detail = details.get(work["id"], {}) + authors = [a.get("name", "") for a in detail.get("authors", [])] + authors = bold_member_authors(authors, work, detail, researcher_index) + + citation = { + "id": work_id(work), + "title": work.get("title") or "", + "authors": authors, + "publisher": work.get("venue") or work.get("preprint_server") or "", + "date": work.get("published_at") or "", + "link": work.get("url") or "", + "type": TYPE_MAP.get(work.get("type"), "paper"), + "year": work.get("year"), + } + return citation + + +def main(): + parser = argparse.ArgumentParser() + parser.add_argument( + "--local", + help="Path to a local insightnet-ai data/ directory to read instead of " + "downloading from GitHub (e.g. ../insightnet-ai/data)", + ) + args = parser.parse_args() + + works, details, researchers = load_data(args) + researcher_index = build_researcher_index(researchers) + + foresite_works = [w for w in works if ORGANIZATION_ID in w.get("organization_ids", [])] + print(f"Found {len(foresite_works)} ForeSITE works in InsightNet data", file=sys.stderr) + + citations = [build_citation(w, details, researcher_index) for w in foresite_works] + citations_by_id = {c["id"]: c for c in citations} + + # apply featured metadata (group + image) from sources.yaml + sources = yaml.safe_load(SOURCES_FILE.read_text()) or [] + + # load the existing citations.yaml as a fallback for featured ids that + # InsightNet hasn't (yet) collected, so featured papers never disappear + existing_citations = {} + if OUTPUT_FILE.exists(): + existing = yaml.safe_load(OUTPUT_FILE.read_text()) or [] + existing_citations = {c["id"]: c for c in existing} + + missing_featured = [] + for source in sources: + sid = source["id"] + # normalize doi ids to lowercase to match work_id() + lookup_id = f"doi:{sid[4:].lower()}" if sid.startswith("doi:") else sid + + if lookup_id in citations_by_id: + citations_by_id[lookup_id]["group"] = source.get("group", "featured") + if source.get("image"): + citations_by_id[lookup_id]["image"] = source["image"] + elif sid in existing_citations: + fallback = dict(existing_citations[sid]) + fallback["group"] = source.get("group", "featured") + if source.get("image"): + fallback["image"] = source["image"] + citations_by_id[sid] = fallback + else: + missing_featured.append(sid) + + if missing_featured: + print( + f"WARNING: {len(missing_featured)} featured id(s) not found in " + f"InsightNet data or existing citations.yaml: {missing_featured}", + file=sys.stderr, + ) + + all_citations = sorted( + citations_by_id.values(), key=lambda c: c.get("date") or "", reverse=True + ) + + yaml.Dumper.ignore_aliases = lambda *args: True + with open(OUTPUT_FILE, "w") as f: + f.write("# DO NOT EDIT, GENERATED AUTOMATICALLY\n\n") + yaml.dump(all_citations, f, default_flow_style=False, sort_keys=False, allow_unicode=True) + + print(f"Wrote {len(all_citations)} citations to {OUTPUT_FILE}", file=sys.stderr) + + +if __name__ == "__main__": + main() diff --git a/_cite/plugins/google-scholar.py b/_cite/plugins/google-scholar.py deleted file mode 100644 index e3841b87..00000000 --- a/_cite/plugins/google-scholar.py +++ /dev/null @@ -1,61 +0,0 @@ -import os -from serpapi import GoogleSearch -from util import * - - -def main(entry): - """ - receives single list entry from google-scholar data file - returns list of sources to cite - """ - - # get api key (serp api key to access google scholar) - api_key = os.environ.get("GOOGLE_SCHOLAR_API_KEY", "") - if not api_key: - raise Exception('No "GOOGLE_SCHOLAR_API_KEY" env var') - - # serp api properties - params = { - "engine": "google_scholar_author", - "api_key": api_key, - "num": 100, # max allowed - } - - # get id from entry - _id = get_safe(entry, "gsid", "") - if not _id: - raise Exception('No "gsid" key') - - # query api - @log_cache - @cache.memoize(name=__file__, expire=1 * (60 * 60 * 24)) - def query(_id): - params["author_id"] = _id - return get_safe(GoogleSearch(params).get_dict(), "articles", []) - - response = query(_id) - - # list of sources to return - sources = [] - - # go through response and format sources - for work in response: - # create source - year = get_safe(work, "year", "") - source = { - "id": get_safe(work, "citation_id", ""), - # api does not provide Manubot-citeable id, so keep citation details - "title": get_safe(work, "title", ""), - "authors": list(map(str.strip, get_safe(work, "authors", "").split(","))), - "publisher": get_safe(work, "publication", ""), - "date": (year + "-01-01") if year else "", - "link": get_safe(work, "link", ""), - } - - # copy fields from entry to source - source.update(entry) - - # add source to list - sources.append(source) - - return sources diff --git a/_cite/plugins/orcid.py b/_cite/plugins/orcid.py deleted file mode 100644 index 00171459..00000000 --- a/_cite/plugins/orcid.py +++ /dev/null @@ -1,109 +0,0 @@ -import json -from urllib.request import Request, urlopen -from util import * - - -def main(entry): - """ - receives single list entry from orcid data file - returns list of sources to cite - """ - - # orcid api - endpoint = "https://pub.orcid.org/v3.0/$ORCID/works" - headers = {"Accept": "application/json"} - - # get id from entry - _id = get_safe(entry, "orcid", "") - if not _id: - raise Exception('No "orcid" key') - - # query api - @log_cache - @cache.memoize(name=__file__, expire=1 * (60 * 60 * 24)) - def query(_id): - url = endpoint.replace("$ORCID", _id) - request = Request(url=url, headers=headers) - response = json.loads(urlopen(request).read()) - return get_safe(response, "group", []) - - response = query(_id) - - # list of sources to return - sources = [] - - # go through response structure and pull out ids e.g. doi:1234/56789 - for work in response: - # get list of ids - ids = get_safe(work, "external-ids.external-id", []) - for summary in get_safe(work, "work-summary", []): - ids = ids + get_safe(summary, "external-ids.external-id", []) - - # prefer doi id type, or fallback to first id - _id = next( - (id for id in ids if get_safe(id, "external-id-type", "") == "doi"), - ids[0] if len(ids) > 0 else {}, - ) - - # get id and id-type from response - id_type = get_safe(_id, "external-id-type", "") - id_value = get_safe(_id, "external-id-value", "") - - # create source - source = {"id": f"{id_type}:{id_value}"} - - # if not a doi, Manubot likely can't cite, so keep citation details - if id_type != "doi": - # get summaries - summaries = get_safe(work, "work-summary", []) - - # sort summary entries by most recent - summaries = sorted( - summaries, - key=lambda summary: (get_safe(summary, "last-modified-date.value", 0)) - or get_safe(summary, "created-date.value", 0) - or 0, - reverse=True, - ) - - # get first summary with defined sub-value - def first(get_func): - return next( - (value for value in map(get_func, summaries) if value), None - ) - - # get title - title = first(lambda s: get_safe(s, "title.title.value", "")) - - # get publisher - publisher = first(lambda s: get_safe(s, "journal-title.value", "")) - - # get date - date = ( - get_safe(work, "last-modified-date.value") - or first(lambda s: get_safe(s, "last-modified-date.value")) - or get_safe(work, "created-date.value") - or first(lambda s: get_safe(s, "created-date.value")) - or 0 - ) - - # get link - link = first(lambda s: get_safe(s, "url.value", "")) - - # keep available details - if title: - source["title"] = title - if publisher: - source["publisher"] = publisher - if date: - source["date"] = format_date(date) - if link: - source["link"] = link - - # copy fields from entry to source - source.update(entry) - - # add source to list - sources.append(source) - - return sources diff --git a/_cite/plugins/pubmed.py b/_cite/plugins/pubmed.py deleted file mode 100644 index 0f2ee60b..00000000 --- a/_cite/plugins/pubmed.py +++ /dev/null @@ -1,46 +0,0 @@ -import json -from urllib.request import Request, urlopen -from urllib.parse import quote -from util import * - - -def main(entry): - """ - receives single list entry from pubmed data file - returns list of sources to cite - """ - - # ncbi api - endpoint = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=$TERM&retmode=json&retmax=1000&usehistory=y" - - # get id from entry - _id = get_safe(entry, "term", "") - if not _id: - raise Exception('No "term" key') - - # query api - @log_cache - @cache.memoize(name=__file__, expire=1 * (60 * 60 * 24)) - def query(_id): - url = endpoint.replace("$TERM", quote(_id)) - request = Request(url=url) - response = json.loads(urlopen(request).read()) - return get_safe(response, "esearchresult.idlist", []) - - response = query(_id) - - # list of sources to return - sources = [] - - # go through response and format sources - for _id in response: - # create source - source = {"id": f"pubmed:{_id}"} - - # copy fields from entry to source - source.update(entry) - - # add source to list - sources.append(source) - - return sources diff --git a/_cite/plugins/sources.py b/_cite/plugins/sources.py deleted file mode 100644 index 9dde4fa9..00000000 --- a/_cite/plugins/sources.py +++ /dev/null @@ -1,6 +0,0 @@ -def main(entry): - """ - receives single list entry from sources data file - returns list of sources to cite - """ - return [entry] diff --git a/_cite/requirements.txt b/_cite/requirements.txt index 9808e763..c3726e8b 100644 --- a/_cite/requirements.txt +++ b/_cite/requirements.txt @@ -1,7 +1 @@ -manubot~=0.6 -PyYAML~=6.0 -diskcache~=5.6 -rich~=13.6 -python-dotenv~=0.21 -google-search-results~=2.4 - +pyyaml diff --git a/_cite/util.py b/_cite/util.py deleted file mode 100644 index 904ff332..00000000 --- a/_cite/util.py +++ /dev/null @@ -1,236 +0,0 @@ -""" -utility functions for cite process and plugins -""" - -import subprocess -import json -import yaml -from yaml.loader import SafeLoader -from pathlib import Path -from datetime import date, datetime -from rich import print -from diskcache import Cache - - -# cache for time-consuming network requests -cache = Cache("./_cite/.cache") - - -# clear expired items from cache -cache.expire() - - -def log_cache(func): - """ - decorator to use around memoized function to log if cached or or not - """ - - def wrap(*args): - key = func.__cache_key__(*args) - if key in cache: - log(" (from cache)", level="INFO", newline=False) - return func(*args) - - return wrap - - -def log(message="\n--------------------\n", indent=0, level="", newline=True): - """ - log to terminal, color determined by indent and level - """ - - palette = { - 0: "[orange1]", - 1: "[salmon1]", - 2: "[violet]", - 3: "[sky_blue1]", - "ERROR": "[white on #F43F5E]", - "WARNING": "[black on #EAB308]", - "SUCCESS": "[black on #10B981]", - "INFO": "[grey70]", - } - color = get_safe(palette, level, "") or get_safe(palette, indent, "") or "[white]" - if newline: - print() - print(indent * " " + color + str(message) + "[/]", end="", flush=True) - - -def label(entry): - """ - get "label" of dict entry (for logging purposes) - """ - - return str(list(entry.keys())[0]) + ": " + str(list(entry.values())[0]) - - -def get_safe(item, path, default=None): - """ - safely access value in nested lists/dicts - """ - - for part in str(path).split("."): - try: - part = int(part) - except ValueError: - part = part - try: - item = item[part] - except (KeyError, IndexError, AttributeError, TypeError): - return default - return item - - -def list_of_dicts(data): - """ - check if data is list of dicts - """ - - return isinstance(data, list) and all(isinstance(entry, dict) for entry in data) - - -def format_date(_date): - """ - format date as YYYY-MM-DD, or no date if malformed - """ - - if isinstance(_date, int): - return datetime.fromtimestamp(_date // 1000.0).strftime("%Y-%m-%d") - if isinstance(_date, (date, datetime)): - return _date.strftime("%Y-%m-%d") - try: - return datetime.strptime(_date, "%Y-%m-%d").strftime("%Y-%m-%d") - except Exception: - return "" - - -def load_data(path): - """ - read data from yaml or json file - """ - - # convert to path object - path = Path(path) - - # check if file exists - if not path.is_file(): - raise Exception("Can't find file") - - # try to open file - try: - file = open(path, encoding="utf8") - except Exception as e: - raise Exception(e or "Can't open file") - - # try to parse as yaml - try: - with file: - data = yaml.load(file, Loader=SafeLoader) - except Exception: - raise Exception("Can't parse file. Make sure it's valid YAML.") - - # if no errors, return data - return data - - -def save_data(path, data): - """ - write data to yaml file - """ - - # convert to path object - path = Path(path) - - # try to open file - try: - file = open(path, mode="w") - except Exception: - raise Exception("Can't open file for writing") - - # prevent yaml anchors/aliases (pointers) - yaml.Dumper.ignore_aliases = lambda *args: True - - # try to save data as yaml - try: - with file: - yaml.dump(data, file, default_flow_style=False, sort_keys=False) - except Exception: - raise Exception("Can't save YAML to file") - - # write warning note to top of file - note = "# DO NOT EDIT, GENERATED AUTOMATICALLY" - try: - with open(path, "r") as file: - data = file.read() - with open(path, "w") as file: - file.write(f"{note}\n\n{data}") - except Exception: - raise Exception("Can't write to file") - - -@log_cache -@cache.memoize(name="manubot", expire=90 * (60 * 60 * 24)) -def cite_with_manubot(_id): - """ - generate citation data for source id with Manubot - """ - - # run Manubot - try: - commands = ["manubot", "cite", _id, "--log-level=WARNING"] - output = subprocess.Popen(commands, stdout=subprocess.PIPE).communicate() - except Exception as e: - log(e, 3) - raise Exception("Manubot could not generate citation") - - # parse results as json - try: - manubot = json.loads(output[0])[0] - except Exception: - raise Exception("Couldn't parse Manubot response") - - # new citation with only needed info - citation = {} - - # original id - citation["id"] = _id - - # title - citation["title"] = get_safe(manubot, "title", "").strip() - - # authors - citation["authors"] = [] - for author in get_safe(manubot, "author", {}): - given = get_safe(author, "given", "").strip() - family = get_safe(author, "family", "").strip() - if given or family: - citation["authors"].append(" ".join([given, family])) - - # publisher - container = get_safe(manubot, "container-title", "").strip() - collection = get_safe(manubot, "collection-title", "").strip() - publisher = get_safe(manubot, "publisher", "").strip() - citation["publisher"] = container or publisher or collection or "" - - # extract date part - def date_part(citation, index): - try: - return citation["issued"]["date-parts"][0][index] - except (KeyError, IndexError, TypeError): - return "" - - # date - year = date_part(manubot, 0) - if year: - # fallbacks for month and day - month = date_part(manubot, 1) or "1" - day = date_part(manubot, 2) or "1" - citation["date"] = format_date(f"{year}-{month}-{day}") - else: - # if no year, consider date missing data - citation["date"] = "" - - # link - citation["link"] = get_safe(manubot, "URL", "").strip() - - # return citation data - return citation diff --git a/_config.yaml b/_config.yaml index fc6d552f..3a9f36ad 100644 --- a/_config.yaml +++ b/_config.yaml @@ -10,7 +10,7 @@ proofer: false links: email: Matthew.Samore@hsc.utah.edu github: https://github.com/EpiForeSITE - twitter: EpiForeSITEDESCRIPTION=An engaging 1-3 sentence description of your lab. + twitter: EpiForeSITE ### jekyll settings diff --git a/_data/citations.yaml b/_data/citations.yaml index b63bab9d..75b2d2c3 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -1,4551 +1,20236 @@ # DO NOT EDIT, GENERATED AUTOMATICALLY -- id: doi:10.1007/s11538-025-01432-2 - title: A Theoretical Framework to Quantify the Tradeoff Between Individual and Population - Benefits of Expanded Antibiotic Use +- id: doi:10.1016/j.bvth.2026.100195 + title: Cost-effectiveness analysis of emicizumab use in hospitalized older individuals + with acquired hemophilia A authors: - - Cormac R. LaPrete - - Sharia M. Ahmed - - Damon J. A. Toth - - Jody R. Reimer - - Valerie M. Vaughn - - Frederick R. Adler - - Lindsay T. Keegan - publisher: Bulletin of Mathematical Biology - date: '2025-04-30' - link: https://doi.org/g9hcn4 - orcid: 0000-0002-8526-3007 - plugin: sources.py - file: sources.yaml + - Lim MY + - Ito S + - Goshua G + - '**Chaiyakunapruk N**' + - Yoo M + - Nelson R + publisher: Blood Vessels, Thrombosis & Hemostasis + date: '2026-11-01' + link: https://doi.org/10.1016/j.bvth.2026.100195 type: paper - group: featured - image: images/abx_frame.png -- id: doi:10.1017/ash.2024.485 - title: Association between social activities and risk of COVID-19 in a cohort of - healthcare personnel + year: 2026 +- id: doi:10.1145/3800962 + title: 'Designing for Engagement: A Comparison of Canvas and a Visual Peer Review + Dashboard' authors: - - Holly Shoemaker - - Haojia Li - - Yue Zhang - - Jeanmarie Mayer - - Michael Rubin - - Candace Haroldsen - - Morgan M. Millar - - Per H. Gesteland - - Andrew T. Pavia - - Lindsay T. Keegan - - Jessica Marie Cole - - Egenia Dorsan - - Matthew Doane - - Kristina Stratford - - Matthew Samore - publisher: Antimicrobial Stewardship & Healthcare Epidemiology - date: '2025-01-01' - link: https://doi.org/g83t2d - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2024.12.18.24319262 - title: A population-level analysis of armed conflict and diphtheria at the subnational - level in the WHO African Region 2017-2024 + - Alon Friedman + - Md Dilshadur Rahman + - Ly Dinh + - '**Paul Rosen**' + publisher: ACM Transactions on Computing Education + date: '2026-09-30' + link: https://doi.org/10.1145/3800962 + type: paper + year: 2026 +- id: doi:10.1038/s41564-026-02447-8 + title: Aminopeptidase N is a receptor for hedgehog merbecoviruses. authors: - - "Tierney O\u2019Sullivan" - - Lindsay T. Keegan - publisher: openRxiv - date: '2024-12-20' - link: https://doi.org/g8xbds - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2024.11.04.24316579 - title: Quantifying the population-level impact of expanded antibiotic treatment - for cholera outbreak management + - Jin M + - Jefferson VA + - Zhao Z + - Catanzaro NJ + - De Sabato L + - Keeler EL + - Menasche BL + - Hoffman C + - Yount BL + - Castelli A + - Di Bartolo I + - Vaccari G + - Starr TN + - '**Seifert SN**' + - Castellanos AA + - Han BA + - Serebryannyy L + - Spaulding AB + - Douek DC + - Moreno A + - Baric RS + - Wilen CB + - Rini JM + - Letko M + publisher: Nature microbiology + date: '2026-09-16' + link: https://doi.org/10.1038/s41564-026-02447-8 + type: paper + year: 2026 +- id: doi:10.1093/jpids/piag087 + title: Outcomes after Modified Pediatric Emergency Care Applied Research Network + Procalcitonin Rule Implementation in Febrile Infant Care Process Model. authors: - - Sharia M. Ahmed - - Cormac R. LaPrete - - Iza Ciglenecki - - Andrew S. Azman - - Daniel T. Leung - - Lindsay T. Keegan - publisher: openRxiv - date: '2024-11-05' - link: https://doi.org/g8qmqh - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1177/00333549241290676 - title: The Effectiveness of Face Mask Mandates on COVID-19 Transmission in Utah + - Jared Olson + - Frank Cipriano + - Amani Jridi + - Roni D Lane + - '**Per H Gesteland**' + - Adam L Hersh + - Carolyn Reynolds + - Marilyn Valentine + - R Neil Davis + - Jeff Schunk + - Emily A Thorell + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2026-09-14' + link: https://doi.org/10.1093/jpids/piag087 + type: paper + year: 2026 +- id: doi:10.1080/20523211.2026.2727205 + title: 'Hypertension prevalence in the Asia-Pacific region: a systematic analysis + of population-based studies.' authors: - - Alicia C. Horn - - Holly E. Shoemaker - - Lindsay T. Keegan - publisher: "Public Health Reports\xAE" - date: '2024-10-30' - link: https://doi.org/g8ps99 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2024.08.28.24312731 - title: A theoretical framework to quantify the tradeoff between individual and population - benefits of expanded antibiotic use + - Olson PS + - Lee TA + - Sarker J + - Sawangjit R + - Tan BK + - Anusornsangiam W + - Heru Setiawan C + - Ayran CM + - Ploylearmsang C + - Kifli N + - Watcharadamrongkun S + - Sookaneknun S + - Van HN + - Sibounheuang P + - Potisarach P + - Fern LA + - Ngo TL + - '**Chaiyakunapruk N**' + - Thundee C + - Leelathanalerk A + publisher: Journal of pharmaceutical policy and practice + date: '2026-09-14' + link: https://doi.org/10.1080/20523211.2026.2727205 + type: paper + year: 2026 +- id: doi:10.1128/aac.00707-26 + title: Comparative effectiveness of ceftolozane/tazobactam relative to ceftazidime/avibactam + for the treatment of adult, hospitalized patients with pneumonia due to multidrug-resistant + Pseudomonas aeruginosa in U.S. Veterans Health Administration facilities. authors: - - Cormac R. LaPrete - - Sharia M. Ahmed - - Damon J.A. Toth - - Jody R. Reimer - - Valerie M. Vaughn - - Frederick R. Adler - - Lindsay T. Keegan - publisher: openRxiv - date: '2024-08-28' - link: https://doi.org/g754qb - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1371/journal.pone.0306622 - title: Importance of underlying mechanisms for interpreting relative risk of Clostridioides - difficile infection among antibiotic-exposed patients in healthcare facilities + - Nicholas S Britt + - '**Karim Khader**' + - Tao He + - Emily M Potter + - Thomas P Lodise + publisher: Antimicrobial agents and chemotherapy + date: '2026-09-09' + link: https://doi.org/10.1128/aac.00707-26 + type: paper + year: 2026 +- id: doi:10.1093/cid/ciag545 + title: 'Reducing Empiric Vancomycin Use in the Pediatric Intensive Care Unit: a + Multicenter Study.' authors: - - Christopher Mitchell - - Lindsay T. Keegan - - Thuy T. T. Le - - Karim Khader - - Alexander Beams - - Matthew H. Samore - - Damon J. A. Toth - publisher: PLOS ONE - date: '2024-08-08' - link: https://doi.org/g754mb - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2024.04.18.24306047 - title: Model-based estimates of age-structured SARS-CoV-2 epidemiology in households + - Kathleen Chiotos + - Preeti Jaggi + - Evan E Facer + - Matthew Goldsmith + - Jason Newland + - Matthew M Sattler + - Christine Lockowitz + - Rebecca G Same + - Yun Li + - Ebbing Lautenbach + - Kai Inoki + - Didien Meyahnwi + - '**Julia E Szymczak**' + - Jeffrey S Gerber + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2026-09-05' + link: https://doi.org/10.1093/cid/ciag545 + type: paper + year: 2026 +- id: doi:10.1007/s40273-026-01660-x + title: 'Landscape Analysis of Literature Using Quantitative Approaches to Synthesize + Economic Evaluation Studies: A Scoping Review.' authors: - - Damon J.A. Toth - - Theresa R. Sheets - - Alexander B. Beams - - Sharia M. Ahmed - - Nathan Seegert - - Jay Love - - Lindsay T. Keegan - - Matthew H. Samore - publisher: openRxiv - date: '2024-04-19' - link: https://doi.org/g754qc - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2023.11.13.23298464 - title: 'Assessing the Impact of Mask Mandates on SARS-CoV-2 Transmission: A Case - Study of Utah' + - Veettil SK + - Thomas C + - En CJ + - Meraz M + - Dhippayom T + - Rashid M + - Cho JY + - Sawangjit R + - Meheus F + - Mirelman A + - Hutubessy R + - '**Chaiyakunapruk N**' + publisher: PharmacoEconomics + date: '2026-09-04' + link: https://doi.org/10.1007/s40273-026-01660-x + type: paper + year: 2026 +- id: doi:10.1371/journal.pone.0332243 + title: The impact of state- versus county-level mask mandates on economic activity + during the COVID-19 pandemic. authors: - - Alicia C. Horn - - Holly E. Shoemaker - - Lindsay T. Keegan - publisher: openRxiv - date: '2023-11-13' - link: https://doi.org/gs4qrw - orcid: 0000-0002-8526-3007 - plugin: sources.py - file: sources.yaml + - Seegert N + - Gaulin M + - Chaiyakunapruk N + - Navarro-Sanchez F + - Nguyen D + - Yang MJ + - '**Nelson RE**' + publisher: PloS one + date: '2026-09-03' + link: https://doi.org/10.1371/journal.pone.0332243 type: paper - group: featured - image: images/Efm.png -- id: doi:10.1093/aje/kwac201 - title: AreStaphylococcus aureusCarrier Types Evidence of Population Heterogeneity? + year: 2026 +- id: doi:10.1093/haschl/qxag230 + title: 'Telehealth use among US adults with type 2 diabetes: differences in medication + fill patterns and care processes.' authors: - - Alexander Beams - - Lindsay T Keegan - - Frederick R Adler - - Matthew H Samore - - Karim Khader - - Damon J A Toth - publisher: American Journal of Epidemiology - date: '2022-11-17' - link: https://doi.org/gs4qv7 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/ofid/ofac492.507 - title: 432. Ward-level Variation in Transmission of MRSA in Veterans Affairs Hospitals + - Terrence T Liu + - John Thomas Menchaca + - Alexander Chaitoff + - Boomer Olsen + - '**Julia E Szymczak**' + - Jorie Butler + - Kensaku Kawamoto + - Renuka Tipirneni + - Molly B Conroy + publisher: Health affairs scholar + date: '2026-09-03' + link: https://doi.org/10.1093/haschl/qxag230 + type: paper + year: 2026 +- id: doi:10.1542/peds.2025-075498 + title: 'Telemedicine Use in Primary Care for Children: 2019-2024.' authors: - - Karim Khader - - Vanessa W Stevens - - Alun Thomas - - Damon Toth - - Lindsay T Keegan - - Michael Rubin - - Matthew H Samore - publisher: Open Forum Infectious Diseases - date: '2022-12-01' - link: https://doi.org/gs4rn3 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2021.02.03.21250974 - title: "Evaluation of individual and ensemble probabilistic forecasts of COVID-19\n\ - \ mortality in the US" - authors: - - Estee Y Cramer - - Evan L Ray - - Velma K Lopez - - Johannes Bracher - - Andrea Brennen - - Alvaro J Castro Rivadeneira - - Aaron Gerding - - Tilmann Gneiting - - Katie H House - - Yuxin Huang - - Dasuni Jayawardena - - Abdul H Kanji - - Ayush Khandelwal - - Khoa Le - - "Anja M\xFChlemann" - - Jarad Niemi - - Apurv Shah - - Ariane Stark - - Yijin Wang - - Nutcha Wattanachit - - Martha W Zorn - - Youyang Gu - - Sansiddh Jain - - Nayana Bannur - - Ayush Deva - - Mihir Kulkarni - - Srujana Merugu - - Alpan Raval - - Siddhant Shingi - - Avtansh Tiwari - - Jerome White - - Neil F Abernethy - - Spencer Woody - - Maytal Dahan - - Spencer Fox - - Kelly Gaither - - Michael Lachmann - - Lauren Ancel Meyers - - James G Scott - - Mauricio Tec - - Ajitesh Srivastava - - Glover E George - - Jeffrey C Cegan - - Ian D Dettwiller - - William P England - - Matthew W Farthing - - Robert H Hunter - - Brandon Lafferty - - Igor Linkov - - Michael L Mayo - - Matthew D Parno - - Michael A Rowland - - Benjamin D Trump - - Yanli Zhang-James - - Samuel Chen - - Stephen V Faraone - - Jonathan Hess - - Christopher P Morley - - Asif Salekin - - Dongliang Wang - - Sabrina M Corsetti - - Thomas M Baer - - Marisa C Eisenberg - - Karl Falb - - Yitao Huang - - Emily T Martin - - Ella McCauley - - Robert L Myers - - Tom Schwarz - - Daniel Sheldon - - Graham Casey Gibson - - Rose Yu - - Liyao Gao - - Yian Ma - - Dongxia Wu - - Xifeng Yan - - Xiaoyong Jin - - Yu-Xiang Wang - - YangQuan Chen - - Lihong Guo - - Yanting Zhao - - Quanquan Gu - - Jinghui Chen - - Lingxiao Wang - - Pan Xu - - Weitong Zhang - - Difan Zou - - Hannah Biegel - - Joceline Lega - - Steve McConnell - - VP Nagraj - - Stephanie L Guertin - - Christopher Hulme-Lowe - - Stephen D Turner - - Yunfeng Shi - - Xuegang Ban - - Robert Walraven - - Qi-Jun Hong - - Stanley Kong - - Axel van de Walle - - James A Turtle - - Michal Ben-Nun - - Steven Riley - - Pete Riley - - Ugur Koyluoglu - - David DesRoches - - Pedro Forli - - Bruce Hamory - - Christina Kyriakides - - Helen Leis - - John Milliken - - Michael Moloney - - James Morgan - - Ninad Nirgudkar - - Gokce Ozcan - - Noah Piwonka - - Matt Ravi - - Chris Schrader - - Elizabeth Shakhnovich - - Daniel Siegel - - Ryan Spatz - - Chris Stiefeling - - Barrie Wilkinson - - Alexander Wong - - Sean Cavany - - "Guido Espa\xF1a" - - Sean Moore - - Rachel Oidtman - - Alex Perkins - - David Kraus - - Andrea Kraus - - Zhifeng Gao - - Jiang Bian - - Wei Cao - - Juan Lavista Ferres - - Chaozhuo Li - - Tie-Yan Liu - - Xing Xie - - Shun Zhang - - Shun Zheng - - Alessandro Vespignani - - Matteo Chinazzi - - Jessica T Davis - - Kunpeng Mu - - Ana Pastore y Piontti - - Xinyue Xiong - - Andrew Zheng - - Jackie Baek - - Vivek Farias - - Andreea Georgescu - - Retsef Levi - - Deeksha Sinha - - Joshua Wilde - - Georgia Perakis - - Mohammed Amine Bennouna - - David Nze-Ndong - - Divya Singhvi - - Ioannis Spantidakis - - Leann Thayaparan - - Asterios Tsiourvas - - Arnab Sarker - - Ali Jadbabaie - - Devavrat Shah - - Nicolas Della Penna - - Leo A Celi - - Saketh Sundar - - Russ Wolfinger - - Dave Osthus - - Lauren Castro - - Geoffrey Fairchild - - Isaac Michaud - - Dean Karlen - - Matt Kinsey - - Luke C. Mullany - - Kaitlin Rainwater-Lovett - - Lauren Shin - - Katharine Tallaksen - - Shelby Wilson - - Elizabeth C Lee - - Juan Dent - - Kyra H Grantz - - Alison L Hill - - Joshua Kaminsky - - Kathryn Kaminsky - - Lindsay T Keegan - - Stephen A Lauer - - Joseph C Lemaitre - - Justin Lessler - - Hannah R Meredith - - Javier Perez-Saez - - Sam Shah - - Claire P Smith - - Shaun A Truelove - - Josh Wills - - Maximilian Marshall - - Lauren Gardner - - Kristen Nixon - - John C. Burant - - Lily Wang - - Lei Gao - - Zhiling Gu - - Myungjin Kim - - Xinyi Li - - Guannan Wang - - Yueying Wang - - Shan Yu - - Robert C Reiner - - Ryan Barber - - Emmanuela Gakidou - - Simon I. Hay - - Steve Lim - - Chris J.L. Murray - - David Pigott - - Heidi L Gurung - - Prasith Baccam - - Steven A Stage - - Bradley T Suchoski - - B. Aditya Prakash - - Bijaya Adhikari - - Jiaming Cui - - "Alexander Rodr\xEDguez" - - Anika Tabassum - - Jiajia Xie - - Pinar Keskinocak - - John Asplund - - Arden Baxter - - Buse Eylul Oruc - - Nicoleta Serban - - Sercan O Arik - - Mike Dusenberry - - Arkady Epshteyn - - Elli Kanal - - Long T Le - - Chun-Liang Li - - Tomas Pfister - - Dario Sava - - Rajarishi Sinha - - Thomas Tsai - - Nate Yoder - - Jinsung Yoon - - Leyou Zhang - - Sam Abbott - - Nikos I Bosse - - Sebastian Funk - - Joel Hellewell - - Sophie R Meakin - - Katharine Sherratt - - Mingyuan Zhou - - Rahi Kalantari - - Teresa K Yamana - - Sen Pei - - Jeffrey Shaman - - Michael L Li - - Dimitris Bertsimas - - Omar Skali Lami - - Saksham Soni - - Hamza Tazi Bouardi - - Turgay Ayer - - Madeline Adee - - Jagpreet Chhatwal - - Ozden O Dalgic - - Mary A Ladd - - Benjamin P Linas - - Peter Mueller - - Jade Xiao - - Yuanjia Wang - - Qinxia Wang - - Shanghong Xie - - Donglin Zeng - - Alden Green - - Jacob Bien - - Logan Brooks - - Addison J Hu - - Maria Jahja - - Daniel McDonald - - Balasubramanian Narasimhan - - Collin Politsch - - Samyak Rajanala - - Aaron Rumack - - Noah Simon - - Ryan J Tibshirani - - Rob Tibshirani - - Valerie Ventura - - Larry Wasserman - - "Eamon B O\u2019Dea" - - John M Drake - - Robert Pagano - - Quoc T Tran - - Lam Si Tung Ho - - Huong Huynh - - Jo W Walker - - Rachel B Slayton - - Michael A Johansson - - Matthew Biggerstaff - - Nicholas G Reich - publisher: openRxiv - date: '2021-02-05' - link: https://doi.org/gs4m2v - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2021.11.04.21265886 - title: The United States COVID-19 Forecast Hub dataset + - Alexander G Fiks + - Janani Ramachandran + - Samuel Wittman + - Mary Kate Kelly + - Kristin Davis + - Jennifer Steffes + - Donna Harris + - Frances M Biel + - Brigit Hatch + - Jody Butto + - Everly Macario + - Jonathan G Yabes + - Dara D Mendez + - '**Julia E Szymczak**' + - Robert W Grundmeier + - Kristin N Ray + publisher: Pediatrics + date: '2026-09-01' + link: https://doi.org/10.1542/peds.2025-075498 + type: paper + year: 2026 +- id: doi:10.1111/irv.70316 + title: Estimating the National Disease Burden and Economic Burden of Respiratory + Syncytial Virus (RSV) in Thailand. authors: - - Estee Y Cramer - - Yuxin Huang - - Yijin Wang - - Evan L Ray - - Matthew Cornell - - Johannes Bracher - - Andrea Brennen - - Alvaro J Castero Rivadeneira - - Aaron Gerding - - Katie House - - Dasuni Jayawardena - - Abdul H Kanji - - Ayush Khandelwal - - Khoa Le - - Jarad Niemi - - Ariane Stark - - Apurv Shah - - Nutcha Wattanchit - - Martha W Zorn - - Nicholas G Reich - publisher: openRxiv - date: '2021-11-04' - link: https://doi.org/gs4m24 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2020.10.26.20210385 - title: A modular approach to integrating multiple data sources into real-time clinical - prediction for pediatric diarrhea + - Boonpattharatthiti K + - Techasaensiri C + - Phongsamart W + - Okada PA + - Patikorn C + - Praphasiri P + - Dhippayom T + - '**Chaiyakunapruk N**' + publisher: Influenza and other respiratory viruses + date: '2026-09-01' + link: https://doi.org/10.1111/irv.70316 + type: paper + year: 2026 +- id: doi:10.1093/cid/ciag273 + title: Electronic Clinical Quality Measures of Antibiotic Use in Hospitalized Adults + With Uncomplicated Community-Acquired Pneumonia. authors: - - Ben J. Brintz - - Benjamin Haaland - - Joel Howard - - Dennis L. Chao - - Joshua L. Proctor - - Ashraful I. Khan - - Sharia M. Ahmed - - Lindsay T. Keegan - - Tom Greene - - Adama Mamby Keita - - Karen L. Kotloff - - James A. Platts-Mills - - Eric J. Nelson - - Adam C. Levine - - Andrew T. Pavia - - Daniel T. Leung - publisher: openRxiv - date: '2020-10-27' - link: https://doi.org/gs4m27 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1038/s41598-021-86811-0 - title: A scenario modeling pipeline for COVID-19 emergency planning + - White AT + - Bidwell Goetz M + - '**Jones M**' + - Neuhauser MM + - Ciarkowski C + - Ratz D + - Gupta A + - Petty LA + - Gandhi TN + - Zhang M + - Kent B + - Wu C + - Horowitz JK + - Flanders SA + - Srinivasan A + - Vaughn VM + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2026-09-01' + link: https://doi.org/10.1093/cid/ciag273 + type: paper + year: 2026 +- id: doi:10.64898/2026.08.19.26360833 + title: 'Rethinking respiratory disease forecasting: temporal heterogeneity between + surveillance predictors and outcomes drives forecast instability' authors: - - Joseph C. Lemaitre - - Kyra H. Grantz - - Joshua Kaminsky - - Hannah R. Meredith - - Shaun A. Truelove - - Stephen A. Lauer - - Lindsay T. Keegan - - Sam Shah - - Josh Wills - - Kathryn Kaminsky - - Javier Perez-Saez - - Justin Lessler - - Elizabeth C. Lee - publisher: Scientific Reports - date: '2021-04-06' - link: https://doi.org/gs4m2p - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1001/jamanetworkopen.2021.40906 - title: Analysis of Vaccine Effectiveness Against COVID-19 and the Emergence of Delta - and Other Variants of Concern in Utah + - Topazian HM + - Sheets TR + - Gruninger RJ + - Kelley J + - LaCross N + - Samore MH + - '**Lofgren E**' + - '**Keegan LT**' + publisher: medRxiv + date: '2026-08-22' + link: https://doi.org/10.64898/2026.08.19.26360833 + type: preprint + year: 2026 +- id: doi:10.32614/cran.package.tabulergm + title: 'tabulergm: Publication-Ready Tables and Summaries for Exponential-Family + Random Graph Models' authors: - - Lindsay T. Keegan - - Shaun Truelove - - Justin Lessler - publisher: JAMA Network Open - date: '2021-12-23' - link: https://doi.org/gs4m2q - orcid: 0000-0002-8526-3007 - plugin: sources.py - file: sources.yaml + - '**George Vega Yon**' + publisher: 'CRAN: Contributed Packages' + date: '2026-08-21' + link: http://dx.doi.org/10.32614/cran.package.tabulergm type: paper - group: featured - image: images/Keegan_VE.png -- id: doi:10.1001/jamanetworkopen.2021.0971 - title: Association Between Contact Precautions and Transmission of Methicillin-Resistant - Staphylococcus aureus in Veterans Affairs Hospitals - authors: - - Karim Khader - - Alun Thomas - - Vanessa Stevens - - Lindsay Visnovsky - - McKenna Nevers - - Damon Toth - - Lindsay T. Keegan - - Makoto Jones - - Michael Rubin - - Matthew H. Samore - publisher: JAMA Network Open - date: '2021-03-15' - link: https://doi.org/gmx7wd - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2021.06.03.21258248 - title: Comparison of antigen- and RT-PCR-based testing strategies for detection - of Sars-Cov-2 in two high-exposure settings + year: 2026 +- id: doi:10.64898/2026.08.17.26360616 + title: Defining Core Competencies and Training Priorities for Infectious Disease + Dynamics as a Discipline authors: - - Jay Love - - Megan T. Wimmer - - Damon J.A. Toth - - Arthi Chandran - - Dilip Makhija - - Charles K. Cooper - - Matthew H. Samore - - Lindsay T. Keegan - publisher: openRxiv - date: '2021-06-06' - link: https://doi.org/gk7cxb - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2021.01.06.21249339 - title: Continued need for non-pharmaceutical interventions after COVID-19 vaccination - in long-term-care facilities + - '**Keegan LT**' + - '**Shoaf K**' + publisher: medRxiv + date: '2026-08-18' + link: https://doi.org/10.64898/2026.08.17.26360616 + type: preprint + year: 2026 +- id: doi:10.1093/milmed/usag213 + title: Exploring TopicGPT for Identification of Themes of Emerging Pathogens in + Biosurveillance Data. authors: - - Jay Love - - Lindsay T. Keegan - - Frederick J. Angulo - - John McLaughlin - - Kimberly M. Shea - - David L. Swerdlow - - Matthew H. Samore - - Damon J.A. Toth - publisher: openRxiv - date: '2021-01-06' - link: https://doi.org/gs4m2s - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.3201/eid2705.203075 - title: Coordinated Strategy for a Model-Based Decision Support Tool for Coronavirus - Disease, Utah, USA + - Callahan A + - Peterson K + - Kalvesmaki A + - Willson T + - Dalton C + - Vuong J + - Gordon C + - Barker C + - Ajinwo N + - Humpherys J + - Stevens V + - Pugh MJ + - '**Jones M**' + publisher: Military medicine + date: '2026-08-01' + link: https://doi.org/10.1093/milmed/usag213 + type: paper + year: 2026 +- id: doi:10.1038/s41592-026-03173-z + title: Code to plot. authors: - - Hannah R. Meredith - - Emerson Arehart - - Kyra H. Grantz - - Alexander Beams - - Theresa Sheets - - Richard Nelson - - Yue Zhang - - Russell G. Vinik - - Darryl Barfuss - - Jacob C. Pettit - - Keegan McCaffrey - - Angela C. Dunn - - Michael Good - - Shannon Frattaroli - - Matthew H. Samore - - Justin Lessler - - Elizabeth C. Lee - - Lindsay T. Keegan - publisher: Emerging Infectious Diseases - date: '2021-05-01' - link: https://doi.org/gs4m2t - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/cid/ciaa1603 - title: Effectiveness of Contact Precautions to Prevent Transmission of Methicillin-Resistant - Staphylococcus aureus and Vancomycin-Resistant Enterococci in Intensive - Care Units + - '**Lex A**' + - Jambor HK + publisher: Nature methods + date: '2026-08-01' + link: https://doi.org/10.1038/s41592-026-03173-z + type: paper + year: 2026 +- id: doi:10.64898/2026.07.28.26359040 + title: 'Investigating pathways of vancomycin-resistant Enterococcus (VRE) contamination + and transmission in intensive care units: a prospective genomic surveillance study.' authors: - - Karim Khader - - Alun Thomas - - W Charles Huskins - - Vanessa Stevens + - Tierney O'Sullivan + - Windy D Tanner + - William Brazelton + - '**Karim Khader**' + - Brian Orleans + - Candace Haroldsen + - '**Matthew H Samore**' + - Michael Rubin - Lindsay T Keegan - - Lindsay Visnovsky - - Matthew H Samore - publisher: Clinical Infectious Diseases - date: '2021-01-15' - link: https://doi.org/gnskcb - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1371/journal.pone.0259097 - title: High variability in transmission of SARS-CoV-2 within households and implications - for control + publisher: medRxiv + date: '2026-07-30' + link: https://doi.org/10.64898/2026.07.28.26359040 + type: preprint + year: 2026 +- id: doi:10.1016/j.lanmic.2026.101445 + title: 'Antimicrobial selection and multidrug resistance in four major pathogens + in the US Veterans Affairs health-care system: a multicentre, retrospective, cohort + study.' authors: - - Damon J. A. Toth - - Alexander B. Beams - - Lindsay T. Keegan + - Thi Mui Pham - Yue Zhang - - Tom Greene - - Brian Orleans - - Nathan Seegert - - Adam Looney - - Stephen C. Alder - - Matthew H. Samore - publisher: PLOS ONE - date: '2021-11-10' - link: https://doi.org/gs4m2w - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.15585/mmwr.mm7019e3 - title: "Modeling of Future COVID-19 Cases, Hospitalizations, and Deaths, by Vaccination\ - \ Rates and Nonpharmaceutical Intervention Scenarios \u2014 United States, April\u2013\ - September 2021" - authors: - - Rebecca K. Borchering - - "C\xE9cile Viboud" - - Emily Howerton - - Claire P. Smith - - Shaun Truelove - - Michael C. Runge - - Nicholas G. Reich - - Lucie Contamin - - John Levander - - Jessica Salerno - - Wilbert van Panhuis - - Matt Kinsey - - Kate Tallaksen - - R. Freddy Obrecht - - Laura Asher - - Cash Costello - - Michael Kelbaugh - - Shelby Wilson - - Lauren Shin - - Molly E. Gallagher - - Luke C. Mullany - - Kaitlin Rainwater-Lovett - - Joseph C. Lemaitre - - Juan Dent - - Kyra H. Grantz - - Joshua Kaminsky - - Stephen A. Lauer - - Elizabeth C. Lee - - Hannah R. Meredith - - Javier Perez-Saez - - Lindsay T. Keegan - - Dean Karlen - - Matteo Chinazzi - - Jessica T. Davis - - Kunpeng Mu - - Xinyue Xiong - - Ana Pastore y Piontti - - Alessandro Vespignani - - Ajitesh Srivastava - - Przemyslaw Porebski - - Srinivasan Venkatramanan - - Aniruddha Adiga - - Bryan Lewis - - Brian Klahn - - Joseph Outten - - James Schlitt - - Patrick Corbett - - Pyrros Alexander Telionis - - Lijing Wang - - Akhil Sai Peddireddy - - Benjamin Hurt - - Jiangzhuo Chen - - Anil Vullikanti - - Madhav Marathe - - Jessica M. Healy - - Rachel B. Slayton - - Matthew Biggerstaff - - Michael A. Johansson - - Katriona Shea - - Justin Lessler - publisher: MMWR. Morbidity and Mortality Weekly Report - date: '2021-05-14' - link: https://doi.org/gmbzh3 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1097/QCO.0000000000000742 - title: Modeling transmission of pathogens in healthcare settings + - McKenna Nevers + - Haojia Li + - '**Karim Khader**' + - Yonatan H Grad + - Matthew Samore + - Marc Lipsitch + publisher: The Lancet. Microbe + date: '2026-07-30' + link: https://doi.org/10.1016/j.lanmic.2026.101445 + type: paper + year: 2026 +- id: doi:10.1093/cid/ciag110 + title: 'Comparing the Antimicrobial Resistance Crisis to the COVID-19 Pandemic: + A Randomized Public Health Messaging Experiment.' authors: - - Anna Stachel - - Lindsay T. Keegan - - Seth Blumberg - publisher: Current Opinion in Infectious Diseases - date: '2021-05-25' - link: https://doi.org/gj8h6p - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1177/0033354920988612 - title: 'Robust Testing in Outpatient Settings to Explore COVID-19 Epidemiology: - Disparities in Race/Ethnicity and Age, Salt Lake County, Utah, 2020' + - Alistair Thorpe + - Rachael A Lee + - '**Julia E Szymczak**' + - Madeline C Farrell + - Isabelle Palmer + - William B Petty + - Tyler Henderson + - Angela Fagerlin + - Valerie M Vaughn + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2026-07-23' + link: https://doi.org/10.1093/cid/ciag110 + type: paper + year: 2026 +- id: doi:10.1111/obr.70198 + title: 'Cardiovascular Outcomes of GLP-1-Based Medicines Among People With Overweight + and Obesity: An Umbrella Review of Meta-Analyses of Randomized Controlled Trials.' authors: - - Sharia M. Ahmed - - Rashmee U. Shah - - Valerie Fernandez - - Sara Grineski - - Benjamin Brintz - - Matthew H. Samore - - Matthew J. Ferrari - - Daniel T. Leung - - Lindsay T. Keegan - publisher: "Public Health Reports\xAE" - date: '2021-02-04' - link: https://doi.org/gs4m2z - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/cid/ciab177 - title: 'The Effects of Using a Clinical Prediction Rule to Prioritize Diagnostic - Testing on Transmission and Hospital Burden: A Modeling Example of Early Severe - Acute Respiratory Syndrome Coronavirus 2' + - Rashid M + - Lee EL + - Veettil SK + - Dhippayom T + - Cheng AYY + - Simonetti J + - '**Chaiyakunapruk N**' + publisher: 'Obesity reviews : an official journal of the International Association + for the Study of Obesity' + date: '2026-07-22' + link: https://doi.org/10.1111/obr.70198 + type: paper + year: 2026 +- id: doi:10.1093/ofid/ofag407 + title: 'US Adults'' Perspectives on Antibiotic Durations and Adherence to Therapy + for Common Bacterial Respiratory Infections: A National Survey.' authors: - - Jody R Reimer - - Sharia M Ahmed + - Alistair Thorpe + - Rachael A Lee + - '**Julia E Szymczak**' + - Madeline C Farrell + - Angela Fagerlin + - Valerie M Vaughn + publisher: Open forum infectious diseases + date: '2026-07-21' + link: https://doi.org/10.1093/ofid/ofag407 + type: paper + year: 2026 +- id: doi:10.1017/ice.2026.10510 + title: Parent and caregiver preferences toward antibiotic allergy delabeling in + children. + authors: + - Alistair Thorpe + - Rachael A Lee + - William B Petty + - Adam L Hersh + - Angela Fagerlin + - Valerie M Vaughn + - '**Julia E Szymczak**' + publisher: Infection control and hospital epidemiology + date: '2026-07-16' + link: https://doi.org/10.1017/ice.2026.10510 + type: paper + year: 2026 +- id: doi:10.1093/infdis/jiag362 + title: Derivation and validation of clinical prediction models for Cryptosporidium-attributed + acute diarrhea in African children. + authors: + - Léna Mazza - Ben J Brintz - - Rashmee U Shah - - Lindsay T Keegan - - Matthew J Ferrari + - M Jahangir Hossain + - Billy Ogwel + - John B Ochieng + - Jane Juma + - Helen Powell + - Adama Mamby Keita + - Richard Omore + - Samba O Sow + - Karen L Kotloff + - James A Platts-Mills + - '**Andrew T Pavia**' - Daniel T Leung - publisher: Clinical Infectious Diseases - date: '2021-02-23' - link: https://doi.org/gs4m23 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/cid/ciaa1580 - title: Transmission Dynamics of Clostridioides difficile in 2 High-Acuity - Hospital Units + publisher: The Journal of infectious diseases + date: '2026-07-16' + link: https://doi.org/10.1093/infdis/jiag362 + type: paper + year: 2026 +- id: doi:10.64898/2026.07.09.26357695 + title: Hidden Burden of a Measles Outbreak Revealed by Genomic and Transmission + Models. authors: - - Karim Khader - - L Silvia Munoz-Price - - Ryan Hanson - - Vanessa Stevens + - Abbey Marye + - '**Damon J A Toth**' + - '**George Vega Yon**' + - Jake Wagoner + - Eric T Lofgren + - '**Matthew H Samore**' + - '**Andrew T Pavia**' + - '**Leisha D Nolen**' + - Kenneth Komatsu + - Kelly Oakeson - Lindsay T Keegan - - Alun Thomas - - Liliana E Pezzin - - Ann Nattinger - - Siddhartha Singh - - Matthew H Samore - publisher: Clinical Infectious Diseases - date: '2021-01-15' - link: https://doi.org/grntk3 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2020.07.07.20148510 - title: Modeling reductions in SARS-CoV-2 transmission and hospital burden achieved - by prioritizing testing using a clinical prediction rule + publisher: medRxiv + date: '2026-07-15' + link: https://doi.org/10.64898/2026.07.09.26357695 + type: preprint + year: 2026 +- id: doi:10.1056/evidpha2600141 + title: Measles Hospitalizations in Utah, 2025-2026. authors: - - Jody R. Reimer - - Sharia M. Ahmed - - Benjamin Brintz - - Rashmee U. Shah - - Lindsay T. Keegan - - Matthew J. Ferrari - - Daniel T. Leung - publisher: openRxiv - date: '2020-07-08' - link: https://doi.org/gg5xbs - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2020.06.12.20129551 - title: 'Planning for the aftershocks: a model of post-acute care needs for hospitalized - COVID-19 patients' + - Anna Jones + - Amelia Salmanson + - Angela Weil + - Danielle Timothy + - '**Leisha D Nolen**' + publisher: NEJM evidence + date: '2026-07-14' + link: https://doi.org/10.1056/evidpha2600141 + type: paper + year: 2026 +- id: doi:10.1007/s11538-026-01690-8 + title: Mathematical Modeling Shows that Overall Infection Burden is Reduced More + by Vaccines that Decrease Spread or Accelerate Recovery than those that Lower + Severe Infections or Death. authors: - - Matthew Maloney - - Ryan Morley - - Robert Checketts - - Peter Weir - - Darryl Barfuss - - Hannah R. Meredith - - Michelle G. Hofmann - - Matthew H. Samore - - Lindsay T. Keegan - publisher: openRxiv - date: '2020-06-13' - link: https://doi.org/gs4m25 - orcid: 0000-0002-8526-3007 - plugin: sources.py - file: sources.yaml + - Hewage IM + - Hewage S + - '**Schwartz EJ**' + publisher: Bulletin of mathematical biology + date: '2026-07-04' + link: https://doi.org/10.1007/s11538-026-01690-8 type: paper - group: featured - image: images/LTCF_PAC.png -- id: doi:10.1101/2020.05.08.20095703 - title: The real time effective reproductive number for COVID-19 in the United States + year: 2026 +- id: doi:10.1017/ash.2026.10756 + title: Provider perceptions of an antimicrobial stewardship program in immunocompromised + patients at a cancer center. authors: - - Yue Zhang - - Lindsay T Keegan - - Qiu Yuqing - - Matthew H Samore - publisher: openRxiv - date: '2020-05-13' - link: https://doi.org/gs4m26 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2020.08.19.20177493 - title: Ensemble Forecasts of Coronavirus Disease 2019 (COVID-19) in the U.S. + - Raneem H Pallotta + - '**Julia E Szymczak**' + - Emily S Spivak + - Hannah Imlay + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2026-07-03' + link: https://doi.org/10.1017/ash.2026.10756 + type: paper + year: 2026 +- id: doi:10.1109/tvcg.2026.3653244 + title: 'MAGIC: Marching Cubes Isosurface Uncertainty Visualization for Gaussian + Uncertain Data With Spatial Correlation.' authors: - - Evan L Ray - - Nutcha Wattanachit - - Jarad Niemi - - Abdul Hannan Kanji - - Katie House - - Estee Y Cramer - - Johannes Bracher - - Andrew Zheng - - Teresa K Yamana - - Xinyue Xiong - - Spencer Woody - - Yuanjia Wang - - Lily Wang - - Robert L Walraven - - Vishal Tomar - - Katharine Sherratt - - Daniel Sheldon - - Robert C Reiner - - B. Aditya Prakash - - Dave Osthus - - Michael Lingzhi Li - - Elizabeth C Lee - - Ugur Koyluoglu - - Pinar Keskinocak - - Youyang Gu - - Quanquan Gu - - Glover E. George - - "Guido Espa\xF1a" - - Sabrina Corsetti - - Jagpreet Chhatwal - - Sean Cavany - - Hannah Biegel - - Michal Ben-Nun - - Jo Walker - - Rachel Slayton - - Velma Lopez - - Matthew Biggerstaff - - Michael A Johansson - - Nicholas G Reich - publisher: openRxiv - date: '2020-08-22' - link: https://doi.org/gg9hz6 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/j.vaccine.2020.06.081 - title: Modeling the potential impact of administering vaccines against Clostridioides - difficile infection to individuals in healthcare facilities + - Athawale TM + - Moreland K + - Pugmire D + - Johnson CR + - '**Rosen P**' + - Norman M + - Georgiadou A + - Entezari A + publisher: IEEE transactions on visualization and computer graphics + date: '2026-07-01' + link: https://doi.org/10.1109/tvcg.2026.3653244 + type: paper + year: 2026 +- id: doi:10.1002/icd.70119 + title: How Parents Support Their Children's Boredom Relates to Dynamics of Neurophysiological + Correlates of Self‐Regulation authors: - - Damon J.A. Toth - - Lindsay T. Keegan - - Matthew H. Samore - - Karim Khader - - Justin J. O'Hagan - - Holly Yu - - Alvaro Quintana - - David L. Swerdlow - publisher: Vaccine - date: '2020-08-01' - link: https://doi.org/gs4m29 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2020.11.25.20186056 - title: Seasonal patterns of dengue incidence in Thailand across the urban-rural - gradient + - Sammy Perone + - Aryn M. Vaughan + - Alana J. Anderson + - '**Elizabeth H. Weybright**' + publisher: Infant and Child Development + date: '2026-07-01' + link: https://doi.org/10.1002/icd.70119 + type: paper + year: 2026 +- id: doi:10.1002/jmv.71040 + title: How Many Veteran COVID-19 Cases Were There during the Pandemic? authors: - - Qifang Bi - - Derek AT Cummings - - Nicholas G. Reich - - Lindsay T. Keegan - - Joshua Kaminsky - - Henrik Salje - - Hannah Clapham - - Pawinee Doung-ngern - - Sopon Iamsirithaworn - - Justin Lessler - publisher: openRxiv - date: '2020-11-27' - link: https://doi.org/gs4m3b - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/cid/ciz808 - title: 'Clinical and Epidemiological Aspects of Diphtheria: A Systematic Review - and Pooled Analysis' + - Widanagamaachchi WN + - Callahan AR + - Willson TM + - Barbeau B + - Lewis JE + - Dalton CD + - Stevens VW + - Samore M + - '**Chaiyakunapruk N**' + - Jones MM + publisher: Journal of medical virology + date: '2026-07-01' + link: https://doi.org/10.1002/jmv.71040 + type: paper + year: 2026 +- id: doi:10.1093/cid/ciag176 + title: Estimating Changes in Facility Methicillin-Resistant Staphylococcus aureus + (MRSA) Infection Rates Due to Changes in MRSA Precaution Policy. authors: - - Shaun A Truelove - - Lindsay T Keegan - - William J Moss - - Lelia H Chaisson - - Emilie Macher - - Andrew S Azman - - Justin Lessler - publisher: Clinical Infectious Diseases - date: '2019-08-19' - link: https://doi.org/gm6s57 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/451153 - title: Perfect Counterfactuals for Epidemic Simulations + - '**Khader K**' + - Haroldsen C + - Stevens V + - Visnovsky L + - Evans M + - Simbartl L + - McCauley B + - Samore M + - Rubin M + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2026-07-01' + link: https://doi.org/10.1093/cid/ciag176 + type: paper + year: 2026 +- id: doi:10.1038/s41592-026-03147-1 + title: Click to plot. authors: - - Joshua Kaminsky - - Lindsay T. Keegan - - C. Jessica E. Metcalf - - Justin Lessler - publisher: openRxiv - date: '2018-10-26' - link: https://doi.org/gk2qhm - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1073/pnas.1714457115 - title: "Prospective forecasts of annual dengue hemorrhagic fever incidence in Thailand,\ - \ 2010\u20132014" + - Jambor HK + - '**Lex A**' + publisher: Nature methods + date: '2026-07-01' + link: https://doi.org/10.1038/s41592-026-03147-1 + type: paper + year: 2026 +- id: doi:10.1109/tvcg.2026.3669148 + title: 'ChannelExplorer: Exploring Class Separability Through Activation Channel + Visualization.' authors: - - Stephen A. Lauer - - Krzysztof Sakrejda - - Evan L. Ray - - Lindsay T. Keegan - - Qifang Bi - - Paphanij Suangtho - - Soawapak Hinjoy - - Sopon Iamsirithaworn - - Suthanun Suthachana - - Yongjua Laosiritaworn - - Derek A.T. Cummings - - Justin Lessler - - Nicholas G. Reich - publisher: Proceedings of the National Academy of Sciences - date: '2018-02-20' - link: https://doi.org/gc733m - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/infdis/jix437 - title: 'Quantifying Zika: Advancing the Epidemiology of Zika With Quantitative Models' + - '**Zaman MR**' + - Wang B + - '**Rosen P**' + publisher: IEEE transactions on visualization and computer graphics + date: '2026-07-01' + link: https://doi.org/10.1109/tvcg.2026.3669148 + type: paper + year: 2026 +- id: doi:10.1001/jamainternmed.2026.1440 + title: Acute Respiratory Infections in Primary Care-Precision Microbiology Fails + to Bring Order to Diagnostic Disarray. authors: - - Lindsay T Keegan - - Justin Lessler - - Michael A Johansson - publisher: The Journal of Infectious Diseases - date: '2017-12-15' - link: https://doi.org/gcrq5c - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/j.jtbi.2016.01.022 - title: Estimating finite-population reproductive numbers in heterogeneous populations + - Jeffrey A Linder + - '**Julia E Szymczak**' + publisher: JAMA internal medicine + date: '2026-07-01' + link: https://doi.org/10.1001/jamainternmed.2026.1440 + type: paper + year: 2026 +- id: doi:10.1097/mlr.0000000000002347 + title: The Impact of an Oncology Hospital at Home Program on Health Care Costs. authors: - - Lindsay T. Keegan - - Jonathan Dushoff - publisher: Journal of Theoretical Biology - date: '2016-05-01' - link: https://doi.org/f8j8rc - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1007/s11538-014-9950-x - title: Analytic Calculation of Finite-Population Reproductive Numbers for Direct- - and Vector-Transmitted Diseases with Homogeneous Mixing + - '**Richard E Nelson**' + - Brock O'Neil + - Anne C Kirchhoff + - Jared Huber + - Minkyoung Yoo + - Kathi Mooney + publisher: Medical care + date: '2026-06-22' + link: https://doi.org/10.1097/mlr.0000000000002347 + type: paper + year: 2026 +- id: doi:10.1111/cgf.70445 + title: Reflections on Traceability for Visualization Research authors: - - Lindsay Keegan - - Jonathan Dushoff - publisher: Bulletin of Mathematical Biology - date: '2014-04-23' - link: https://doi.org/f52vb3 - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/1471-2334-13-428 - title: Population-level effects of clinical immunity to malaria + - J. Rogers + - D. Akbaba + - J. S. Brown + - '**A. Lex**' + - M. Meyer + publisher: Computer Graphics Forum + date: '2026-06-17' + link: https://doi.org/10.1111/cgf.70445 + type: paper + year: 2026 +- id: doi:10.1111/cgf.70460 + title: Guardrail Selection in Line Charts to Contextualize Persuasive Visualizations authors: - - Lindsay T Keegan - - Jonathan Dushoff - publisher: BMC Infectious Diseases - date: '2013-09-11' - link: https://doi.org/gb466c - orcid: 0000-0002-8526-3007 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/cid/ciag273 - title: Electronic Clinical Quality Measures of Antibiotic Use in Hospitalized Adults - with Uncomplicated Community-acquired Pneumonia + - K. A. Nadib + - M. Kogan + - '**A. Lex**' + - M. Lisnic + publisher: Computer Graphics Forum + date: '2026-06-17' + link: https://doi.org/10.1111/cgf.70460 + type: paper + year: 2026 +- id: doi:10.1017/ash.2026.10410 + title: 'Antimicrobial stewardship: coming to a community pharmacy near you? A cross-sectional + study to understand the perspectives of pharmacists, prescribers and the public.' authors: - - Andrea T White - - Matthew Bidwell Goetz - - Makoto Jones - - Melinda M Neuhauser - - Claire Ciarkowski - - David Ratz - - Ashwin Gupta - - Lindsay A Petty - - Tejal N Gandhi - - Mingyuan Zhang - - Brittany Kent - - Chaorong Wu - - Jennifer K Horowitz - - Scott A Flanders - - Arjun Srinivasan - - Valerie M Vaughn - publisher: Clinical Infectious Diseases - date: '2026-04-21' - link: https://doi.org/hbz789 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/milmed/usag213 - title: pendingpublications - authors: [] - publisher: '' - date: '' - link: https://doi.org/hbz79b - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1002/ACR.70023 - title: "COVID\n \u201019 Vaccination Is Not Associated\ - \ With the Development of Idiopathic Inflammatory Myositis in\n \ - \ US\n Veterans" - authors: - - "Caleb Hern\xE1ndez" - - Naomi Schlesinger - - Jorge Rojas - - Jessica A. Walsh - - Tawnie J. Braaten - - Gary A. Kunkel - - Makoto Jones - - Brian C Sauer - - Julio Facelli - - Grant W. Cannon - - "Dorota Lebiedz\u2010Odrobina" - publisher: Arthritis Care & Research - date: '2026-03-13' - link: https://doi.org/hbz79c - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIAF619 - title: Using Generative Artificial Intelligence for Healthcare-Associated Infection - Surveillance + - Bradley J Langford + - Shankavi Vigneswaran + - Nick Daneman + - Rita Ha + - Certina Ho + - Lina Ko + - Valerie Leung + - Wendy Levinson + - Mira Maximos + - Kim Neudorf + - Angeline Ng + - John Papastergiou + - Sumit Raybardhan + - Kevin L Schwartz + - Maureen Smith + - '**Julia E Szymczak**' + - Mina Tadrous + - Kathy Tam + - Daniel Warshafsky + - Miranda So + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2026-06-16' + link: https://doi.org/10.1017/ash.2026.10410 + type: paper + year: 2026 +- id: doi:10.64898/2026.06.10.731004 + title: Molecular and ecological determinants of effective reassortment in orthohantaviruses authors: - - Daniel J Morgan - - Katherine E Goodman - - Westyn Branch-Elliman - - Erica S Shenoy - - Jorge L Salinas - - Makoto Jones - - Sunny P Singh - - Gregory M Schrank - - Lisa Pineles - - Shatha AlShanqeeti - - Anthony D Harris - - Eili Klein - publisher: Clinical Infectious Diseases - date: '2025-11-12' - link: https://doi.org/hbz79d - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1089/HEQ.2024.0067 - title: "COVID-19 Vaccine Rollout Strategies in Utah from Local Health Departments\u2019\ - \ Perspectives: A Qualitative Analysis of Focus Group Discussions" - authors: - - Khanh N. C. Duong - - Sajesh K. Veettil - - Richard E. Nelson - - Barbara E. Jones - - Andrew T. Pavia - - Danielle T. Nguyen - - Makoto M. Jones - - Matthew H. Samore - - Susan L. Zickmund - - Patrick Galyean - - Nathorn Chaiyakunapruk - publisher: Health Equity - date: '2025-01-13' - link: https://doi.org/hbz79f - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1097/MLR.0000000000002145 - title: Combining Machine Learning and Comparative Effectiveness Methodology to Study - Primary Care Pharmacotherapy Pathways for Veterans With Depression + - Rivero R + - Simons D + - Damodaran L + - Karegi I + - Gurev S + - Becker DJ + - Warren DL + - Mueller NF + - Rasmussen DA + - '**Seifert SN**' + publisher: bioRxiv + date: '2026-06-12' + link: https://doi.org/10.64898/2026.06.10.731004 + type: preprint + year: 2026 +- id: doi:10.1093/cid/ciag328 + title: 'Clinical Impact of the BIOFIRE® FILMARRAY® Pneumonia Panel in the Veterans + Affairs Healthcare System: A Difference-in-Differences Study.' authors: - - Ozgur Ozmen - - Everett Rush - - Byung H. Park - - Makoto Jones - - Jodie Trafton - - Lisa Brenner - - Randall W. Rupper - - Merry Ward - - Jonathan R. Nebeker - - Steven D. Pizer - publisher: Medical Care - date: '2025-04-22' - link: https://doi.org/hbz79g - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.3389/FRHS.2025.1566454 - title: 'Standard vs. enhanced implementation strategies to increase adoption of - a multidrug-resistant organism alert tool: a cluster randomized trial' - authors: - - Cara Ray - - Cassie Goedken - - Ashley M. Hughes - - Geneva M. Wilson - - Natalie R. Hicks - - Margaret A. Fitzpatrick - - Makoto M. Jones - - Christopher Pfeiffer - - James Stacey Klutts - - Martin E. Evans - - Katie Joy Suda - - Charlesnika T. Evans - publisher: Frontiers in Health Services - date: '2025-09-18' - link: https://doi.org/hbz79h - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.3233/SHTI231236 - title: A Linguistic Analysis Examining the Impact of COVID-19 on Pneumonia Diagnosis - and Disease Models + - Britt NS + - '**Khader K**' + - He T + - Prinzi AM + - Hommel B + - Timbrook TT + - Potter EM + - Lodise TP + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2026-06-12' + link: https://doi.org/10.1093/cid/ciag328 + type: paper + year: 2026 +- id: doi:10.1111/cgf.70475 + title: Evaluating Encodings for Bivariate Edges in Adjacency Matrices authors: - - Alec B. Chapman - - Kelly S. Peterson - - Elizabeth Rutter - - Mckenna Nevers - - Jian Ying - - David Classen - - Makoto Jones - - Matthew Samore - - Barbara Jones - publisher: Studies in Health Technology and Informatics - date: '2024-01-25' - link: https://doi.org/hbz79j - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ASH.2024.404 - title: A cross-sectional survey of Department of Veterans Affairs laboratory practices - for identification of carbapenem-resistant Acinetobacter baumannii and - Pseudomonas aeruginosa + - J. Acosta‐Hernández + - '**A. Lex**' + - '**T. He**' + publisher: Computer Graphics Forum + date: '2026-06-11' + link: https://doi.org/10.1111/cgf.70475 + type: paper + year: 2026 +- id: doi:10.1007/s40121-026-01371-y + title: Calculating the Probability that a Previously Susceptible Individual is Infected + as a Function of Time Following Exposure to SARS-CoV-2. authors: - - Aubrey M. Sawyer - - Cara Ray - - J. Stacey Klutts - - Margaret Fitzpatrick - - Katie J. Suda - - Natalie Hicks - - Martin Evans - - Makoto Jones - - Christopher D. Pfeiffer - - Charlesnika T. Evans - publisher: Antimicrobial Stewardship & Healthcare Epidemiology - date: '2024-01-01' - link: https://doi.org/hbz79k - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/S12911-024-02469-4 - title: A framework for inferring and analyzing pharmacotherapy treatment patterns + - Thomas A + - '**Khader K**' + - Hersh A + - Samore M + publisher: Infectious diseases and therapy + date: '2026-06-05' + link: https://doi.org/10.1007/s40121-026-01371-y + type: paper + year: 2026 +- id: doi:10.64898/2026.06.03.729761 + title: Viral reservoir status in small mammals emerges as a predictable life-history + trait after correcting for surveillance bias authors: - - Everett Rush - - Ozgur Ozmen - - Minsu Kim - - Erin Rush Ortegon - - Makoto Jones - - Byung H. Park - - Steven Pizer - - Jodie Trafton - - Lisa A. Brenner - - Merry Ward - - Jonathan R. Nebeker - publisher: BMC Medical Informatics and Decision Making - date: '2024-03-08' - link: https://doi.org/gtwq9d - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:001277006600014 - title: ASSESSMENT OF THE EFFECTS OF AN EQUITY-TARGETED VACCINATION OUTREACH PROGRAM - ON OVERALL AND DISTRIBUTIONAL HEALTH AND ECONOMIC OUTCOMES - authors: [] - publisher: VALUE IN HEALTH - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:001277006600014 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1371/JOURNAL.PDIG.0000528 - title: Automating detection of diagnostic error of infectious diseases using machine - learning - authors: - - Kelly S. Peterson - - Alec B. Chapman - - Wathsala Widanagamaachchi - - Jesse Sutton - - Brennan Ochoa - - Barbara E. Jones - - Vanessa Stevens - - David C. Classen - - Makoto M. Jones - publisher: PLOS Digital Health - date: '2024-06-07' - link: https://doi.org/hbz79m - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2024.79 - title: Development and implementation of a nationwide multidrug-resistant organism - tracking and alert system for Veterans Affairs medical centers - authors: - - Christopher D. Pfeiffer - - Makoto M. Jones - - James S. Klutts - - Quinn A. Francis - - Hannah M. Flegal - - Adrienne O. Murray - - Tina M. Willson - - Natalie R. Hicks - - Charlesnika T. Evans - - Martin E. Evans - publisher: Infection Control & Hospital Epidemiology - date: '2024-05-24' - link: https://doi.org/hbz79n - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.7326/M23-2505 - title: Diagnostic Discordance, Uncertainty, and Treatment Ambiguity in Community-Acquired - Pneumonia - authors: - - Barbara E. Jones - - Alec B. Chapman - - Jian Ying - - Elizabeth D. Rutter - - McKenna R. Nevers - - Alden Baker - - Nathan C. Dean - - Megan L. Fix - - Hardeep Singh - - Karen S. Cosby - - Peter A. Taber - - Charlene D. Weir - - Makoto M. Jones - - Matthew H. Samore - - Jorie M. Butler - publisher: Annals of Internal Medicine - date: '2024-09-01' - link: https://doi.org/hbz79p - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ASH.2024.36 - title: Facility- and patient-level factors associated with implementation of contact - precautions in hospitalized VA patients with positive CRE cultures + - Simons D + - Rivero R + - Rickard G + - Martinez-Checa A + - Gordon H + - Redding DW + - '**Seifert SN**' + publisher: bioRxiv + date: '2026-06-04' + link: https://doi.org/10.64898/2026.06.03.729761 + type: preprint + year: 2026 +- id: doi:10.1371/journal.pntd.0014420 + title: 'Estimating the distributional impact of improving access to snake antivenom + in urban and rural Lao People''s Democratic Republic: An extended cost-effectiveness + analysis.' authors: - - Geneva M. Wilson - - Margaret Fitzpatrick - - Katie J. Suda - - Linda Poggensee - - Makoto Jones - - Martin E. Evans - - Charlesnika T. Evans - publisher: Antimicrobial Stewardship & Healthcare Epidemiology - date: '2024-01-01' - link: https://doi.org/hbz79q - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:001277006601355 - title: 'INCORPORATING SOCIAL DETERMINANTS OF HEALTH INTO TRANSMISSION MODELING OF - COVID-19 VACCINE IN THE US: A SCOPING REVIEW' - authors: [] - publisher: VALUE IN HEALTH - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:001277006601355 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1513/ANNALSATS.202306-505OC - title: Impact of Reducing Time-to-Antibiotics on Sepsis Mortality, Antibiotic Use, - and Adverse Events - authors: - - John P. Donnelly - - Sarah M. Seelye - - Patricia Kipnis - - Brenda M. McGrath - - Theodore J. Iwashyna - - Jason Pogue - - Makoto Jones - - Vincent X. Liu - - Hallie C. Prescott - publisher: Annals of the American Thoracic Society - date: '2024-01-01' - link: https://doi.org/hbz79r - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.LANA.2024.100806 - title: 'Incorporating social determinants of health into transmission modeling of - COVID-19 vaccine in the US: a scoping review' + - Patikorn C + - Khuharatanachai T + - Cho JY + - Taychakhoonavudh S + - Mayxay M + - Senbounsou K + - Blessmann J + - '**Chaiyakunapruk N**' + publisher: PLoS neglected tropical diseases + date: '2026-06-04' + link: https://doi.org/10.1371/journal.pntd.0014420 + type: paper + year: 2026 +- id: doi:10.1111/cgf.70435 + title: 'Designing Annotations in Visualization: Considerations from Visualization + Practitioners and Educators' authors: - - Khanh N.C. Duong - - Danielle T. Nguyen - - Warittakorn Kategeaw - - Xi Liang - - Win Khaing - - Lindsay D. Visnovsky - - Sajesh K. Veettil - - Mary M. McFarland - - Richard E. Nelson - - Barbara E. Jones - - Andrew T. Pavia - - Emma Coates - - Karim Khader - - Jay Love - - George G. Vega Yon - - Yue Zhang - - Tina Willson - - Egenia Dorsan - - Damon J.A. Toth - - Makoto M. Jones - - Matthew H. Samore - - Nathorn Chaiyakunapruk - publisher: The Lancet Regional Health - Americas - date: '2024-07-01' - link: https://doi.org/hbz79s - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/JAMIA/OCAE112 - title: "Pneumonia diagnosis performance in the emergency department: a mixed-methods\ - \ study about clinicians\u2019 experiences and exploration of individual differences\ - \ and response to diagnostic performance feedback" + - Md Dilshadur Rahman + - Devin Lange + - Ghulam Jilani Quadri + - '**Paul Rosen**' + publisher: Computer Graphics Forum + date: '2026-06-04' + link: https://doi.org/10.1111/cgf.70435 + type: paper + year: 2026 +- id: doi:10.1177/00333549261446270 + title: A Qualitative Evaluation of Community Colleges as a Pathway to the Certified + in Disease Intervention Credential. authors: - - Jorie M Butler - - Teresa Taft - - Peter Taber - - Elizabeth Rutter - - Megan Fix - - Alden Baker - - Charlene Weir - - McKenna Nevers - - David Classen - - Karen Cosby - - Makoto Jones - - Alec Chapman - - Barbara E Jones - publisher: Journal of the American Medical Informatics Association - date: '2024-05-25' - link: https://doi.org/hbz79t - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2024.6 - title: "Research agenda for antibiotic stewardship within the Veterans\u2019 Health\ - \ Administration, 2024\u20132028" - authors: - - Daniel J. Livorsi - - Westyn Branch-Elliman - - Dimitri Drekonja - - Kelly L. Echevarria - - Margaret A. Fitzpatrick - - Matthew Bidwell Goetz - - Christopher J. Graber - - Makoto M. Jones - - Allison A. Kelly - - Karl Madaras-Kelly - - Daniel J. Morgan - - Vanessa W. Stevens - - Katie Suda - - Barbara W. Trautner - - Michael J. Ward - - Robin L.P. Jump - publisher: Infection Control & Hospital Epidemiology - date: '2024-02-02' - link: https://doi.org/hbz79v - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:001331419108150 - title: The Risk for Development of Myositis Is Not Increased After COVID-19 Vaccination - Among US Veterans - authors: [] - publisher: ARTHRITIS & RHEUMATOLOGY - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:001331419108150 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIAD388 - title: Active Surveillance and Contact Precautions for Preventing Methicillin-Resistant - Staphylococcus aureus Healthcare-Associated Infections During the COVID-19 - Pandemic + - Kristina S Gale + - Jennifer Dailey-Provost + - Mindy Bateman + - Judith Hilman + - '**Kimberley Shoaf**' + - Lisa H Gren + publisher: 'Public health reports (Washington, D.C. : 1974)' + date: '2026-06-04' + link: https://doi.org/10.1177/00333549261446270 + type: paper + year: 2026 +- id: doi:10.64898/2026.05.28.26354384 + title: Why epidemic risk at the 2026 World Cup may not be what you think authors: - - Martin E Evans - - Loretta A Simbartl - - Brian P McCauley - - Linda K Flarida - - Makoto M Jones - - Anthony D Harris - - Eli N Perencevich - - Michael A Rubin - - Natalie R Hicks - - Stephen M Kralovic - - Gary A Roselle - publisher: Clinical Infectious Diseases - date: '2023-06-30' - link: https://doi.org/hbz79w - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:001031473300069 - title: 'DISPARITIES IN COVID-19 RELATED OUTCOMES IN THE UNITED STATES BY RACE AND - ETHNICITY: AN UMBRELLA REVIEW OF META-ANALYSES' - authors: [] - publisher: VALUE IN HEALTH - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:001031473300069 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/AJCP/AQAD044 - title: Development and validation of a standardized blood culture contamination - definition and metric dashboard for a large health care system + - Lessler J + - Smith CP + - Das P + - Sykes AL + - Urbinati A + - Geith K + - Powers KA + - Davis JT + - Kern-Allely SC + - '**Vega Yon GG**' + - Lofgren ET + - Pearson CA + - Vespignani A + publisher: medRxiv + date: '2026-06-01' + link: https://doi.org/10.64898/2026.05.28.26354384 + type: preprint + year: 2026 +- id: doi:10.1287/mnsc.2024.07524 + title: Should Human Capital Development Programs be Mandatory or Voluntary? Evidence + from a Field Experiment on Mentorship authors: - - Jill A Hancock - - Sheldon Campbell - - Makoto M Jones - - Jessica Wang-Rodriguez - - Stacey Klutts - - Sheldon Campbell - - Theresa Weber - - Bonnie Greene - - Ruben Benitez Espinosa - - Cari Orth - - Lyndi Anderson - - Chasity Vigliotti - - Amy Frank - - Rosella Baraceros-Pineda - - Jeanna Donkle - - Tammy Cummings - - Laura Behrends - - Jennifer Young - - Shannon Krajcir - - Rachel Scholten - - J Stacey Klutts - publisher: American Journal of Clinical Pathology - date: '2023-05-11' - link: https://doi.org/hbz79x - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.3389/FPUBH.2023.1206988 - title: 'Disparities in COVID-19 related outcomes in the United States by race and - ethnicity pre-vaccination era: an umbrella review of meta-analyses' + - Jason Sandvik + - Richard Saouma + - '**Nathan Seegert**' + - Christopher Stanton + publisher: Management Science + date: '2026-06-01' + link: https://doi.org/10.1287/mnsc.2024.07524 + type: paper + year: 2026 +- id: doi:10.1002/phar.70154 + title: Cost-Effectiveness Analysis of Patient Self-Management of Warfarin Among + Patients With Non-Valvular Atrial Fibrillation. authors: - - Khanh N. C. Duong - - Lan M. Le - - Sajesh K. Veettil - - Pantakarn Saidoung - - Warintorn Wannaadisai - - Richard E. Nelson - - Mike Friedrichs - - Barbara E. Jones - - Andrew T. Pavia - - Makoto M. Jones - - Matthew H. Samore - - Nathorn Chaiyakunapruk - publisher: Frontiers in Public Health - date: '2023-09-07' - link: https://doi.org/hbz79z - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2022.93 - title: Healthcare-associated infections in Veterans Affairs acute-care and long-term - healthcare facilities during the coronavirus disease 2019 (COVID-19) pandemic - authors: - - Martin E. Evans - - Loretta A. Simbartl - - Stephen M. Kralovic - - Marla Clifton - - Kathleen DeRoos - - Brian P. McCauley - - Natalie Gauldin - - Linda K. Flarida - - Shantini D. Gamage - - Makoto M. Jones - - Gary A. Roselle - publisher: Infection Control & Hospital Epidemiology - date: '2022-04-05' - link: https://doi.org/gt582k - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2022.55 - title: 'Hospital coronavirus disease 2019 (COVID-19) public health reporting: Lessons - from validation of an automated surveillance tool to facilitate data collection' - authors: - - Shantini D. Gamage - - Martin E. Evans - - Brian P. McCauley - - Karen R. Lipscomb - - Linda Flarida - - Makoto M. Jones - - Michael Baza - - Jeremy Barraza - - Loretta A. Simbartl - - Gary A. Roselle - publisher: Infection Control & Hospital Epidemiology - date: '2022-03-30' - link: https://doi.org/hbz792 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2022.281 - title: "Lack of correlation between standardized antimicrobial administration ratios\ - \ (SAARs) and healthcare-facility\u2013onset Clostridioides difficile infection\ - \ rates in Veterans Affairs medical facilities" - authors: - - Martin E. Evans - - Makoto M. Jones - - Kelly W. Davis - - Matthew T. Lane - - Loretta A. Simbartl - - Brian P. McCauley - - Natalie Gauldin - - Gary A. Roselle - publisher: Infection Control & Hospital Epidemiology - date: '2022-12-01' - link: https://doi.org/hbz793 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2022.100 - title: "Performance of infectious diseases specialists, hospitalists, and other\ - \ internal medicine physicians in antimicrobial case-based scenarios: Potential\ - \ impact of antimicrobial stewardship programs at 16 Veterans\u2019 Affairs medical\ - \ centers" - authors: - - Christopher J. Graber - - Alissa R. Simon - - Yue Zhang - - Matthew Bidwell Goetz - - Makoto M. Jones - - Jorie M. Butler - - Ann F. Chou - - Peter A. Glassman - publisher: Infection Control & Hospital Epidemiology - date: '2022-05-04' - link: https://doi.org/hbz794 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ASH.2023.500 - title: Treatment effectiveness of antibiotic therapy in Veterans with multidrug-resistant - Acinetobacter spp. bacteremia - authors: - - Amanda Vivo - - Margaret A. Fitzpatrick - - Katie J. Suda - - Geneva M. Wilson - - Makoto M. Jones - - Martin E. Evans - - Charlesnika T. Evans - publisher: Antimicrobial Stewardship & Healthcare Epidemiology - date: '2023-01-01' - link: https://doi.org/hbz795 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.JBI.2022.104178 - title: A flexible framework for visualizing and exploring patient misdiagnosis over - time + - Kategeaw W + - Witt DM + - King JB + - Malone DC + - '**Chaiyakunapruk N**' + publisher: Pharmacotherapy + date: '2026-06-01' + link: https://doi.org/10.1002/phar.70154 + type: paper + year: 2026 +- id: doi:10.1016/j.ophtha.2026.05.030 + title: Estimated Medicare Part D Ocular Drug Savings with a Direct-to-Consumer Pharmacy. authors: - - Wathsala Widanagamaachchi - - Kelly Peterson - - Alec Chapman - - David Classen - - Makoto Jones - publisher: Journal of Biomedical Informatics - date: '2022-10-01' - link: https://doi.org/hbz796 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2020.328 - title: "A survey of infection control strategies for carbapenem-resistant Enterobacteriaceae\ - \ in Department of Veterans\u2019 Affairs facilities" - authors: - - Swetha Ramanathan - - Katie J. Suda - - Margaret A. Fitzpatrick - - Marylou Guihan - - Cassie Cunningham Goedken - - Nasia Safdar - - Martin Evans - - Makoto Jones - - Christopher D. Pfeiffer - - Eli N. Perencevich - - Michael Rubin - - Charlesnika T. Evans - publisher: Infection Control & Hospital Epidemiology - date: '2020-09-22' - link: https://doi.org/hbz797 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1111/1475-6773.13931 - title: Analysis of a national response to a White House directive for ending veteran - suicide + - Max Liu + - Minkyoung Yoo + - Charissa H Tan + - Lieu N Lowrie + - Zoha N Mian + - Vamsee K Vemulapalli + - '**Richard E Nelson**' + - Liliana Werner + - Nick Mamalis + publisher: Ophthalmology + date: '2026-05-27' + link: https://doi.org/10.1016/j.ophtha.2026.05.030 + type: paper + year: 2026 +- id: doi:10.1007/s11908-026-00882-6 + title: 'Mobile Health Tools to Support Antimicrobial Prescribing: An Integrative + Review of Digital Applications' authors: - - Andrea F. Kalvesmaki - - Alec B. Chapman - - Kelly S. Peterson - - Mary Jo Pugh - - Makoto Jones - - Theresa C. Gleason - publisher: Health Services Research - date: '2022-03-03' - link: https://doi.org/hbz798 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/JACAMR/DLAC106 - title: Comparative effectiveness of antibiotic therapy for carbapenem-resistant - Enterobacterales (CRE) bloodstream infections in hospitalized US veterans + - Adalin Mariya Simon + - Irshad Pasha + - Thekkumcheril Sidhick Sulfath + - Ambalappotta Hafis + - Nihala Jabeen + - Christy Thomas + - Ruksana Begum + - Manik Chhabra + - Mohamed Hisham + - '**Muhammed Rashid**' + publisher: Current Infectious Disease Reports + date: '2026-05-22' + link: https://doi.org/10.1007/s11908-026-00882-6 + type: paper + year: 2026 +- id: doi:10.1371/journal.pone.0348519 + title: 'A qualitative study to inform the design and implementation of AI-driven + diagnosis: Challenges, barriers, and clinical insights of physicians.' authors: - - Geneva M Wilson - - Margaret A Fitzpatrick - - Katie J Suda - - Bridget M Smith - - Beverly Gonzalez - - Makoto Jones - - Marin L Schweizer - - Martin Evans - - Charlesnika T Evans - publisher: JAC-Antimicrobial Resistance - date: '2022-09-05' - link: https://doi.org/hbz799 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2022.05.10.22274910 - title: Development and evaluation of an interoperable natural language processing - system for identifying pneumonia across clinical settings of care + - Chitrapady S + - Poojari PG + - '**Rashid M**' + - Kunhikatta V + - Varma D M + - Acharya RV + - K N S + - Devi V + - Acharya U D + - Khan S + - Thunga G + publisher: PloS one + date: '2026-05-22' + link: https://doi.org/10.1371/journal.pone.0348519 + type: paper + year: 2026 +- id: doi:10.64898/2026.05.14.26353143 + title: Derivation and validation of clinical prediction models for viral etiologies + of acute diarrhea in North American children presenting for emergency care. authors: - - Alec B Chapman - - Kelly S Peterson - - Elizabeth Rutter - - McKenna Nevers - - Mingyuan Zhang - - Jian Ying - - Makoto Jones - - David Classen - - Barbara Jones - publisher: openRxiv - date: '2022-05-10' - link: https://doi.org/hbz8bb - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/JAMIAOPEN/OOAC114 - title: Development and evaluation of an interoperable natural language processing - system for identifying pneumonia across clinical settings of care and institutions + - Paola Fonseca-Romero + - Timothy Smith + - Sharia M Ahmed + - Anna Jones + - Natalya Alekhina + - Ben J Brintz + - Jennifer Dien Bard + - Kimberle C Chapin + - Daniel M Cohen + - Ara Festekjian + - Jami T Jackson + - Neena Kanwar + - Chari D Larsen + - Amy L Leber + - Rangaraj Selvarangan + - Stephen Freedman + - '**Andrew T Pavia**' + - Daniel T Leung + publisher: medRxiv + date: '2026-05-18' + link: https://doi.org/10.64898/2026.05.14.26353143 + type: preprint + year: 2026 +- id: doi:10.1056/evidpha2600093 + title: Intramuscular Immunoglobulin for Measles Postexposure Prophylaxis. authors: - - Alec B Chapman - - Kelly S Peterson - - Elizabeth Rutter - - Mckenna Nevers - - Mingyuan Zhang - - Jian Ying - - Makoto Jones - - David Classen - - Barbara Jones - publisher: JAMIA Open - date: '2022-10-04' - link: https://doi.org/hbz8bc - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/S12879-022-07436-W - title: 'Epidemiology and outcomes associated with carbapenem-resistant Acinetobacter - baumannii and carbapenem-resistant Pseudomonas aeruginosa: a retrospective cohort - study' - authors: - - Amanda Vivo - - Margaret A. Fitzpatrick - - Katie J. Suda - - Makoto M. Jones - - Eli N. Perencevich - - Michael A. Rubin - - Swetha Ramanathan - - Geneva M. Wilson - - Martin E. Evans - - Charlesnika T. Evans - publisher: BMC Infectious Diseases - date: '2022-05-24' - link: https://doi.org/hbz8bd - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ASH.2021.220 - title: "Increased carbapenemase testing following implementation of national\n \ - \ VA guidelines for carbapenem-resistant Enterobacterales (CRE)" - authors: - - Margaret A. Fitzpatrick - - Katie J. Suda - - Swetha Ramanathan - - Geneva Wilson - - Linda Poggensee - - Martin Evans - - Makoto M. Jones - - Christopher D. Pfeiffer - - J. Stacey Klutts - - Eli Perencevich - - Michael Rubin - - Charlesnika T. Evans - publisher: Antimicrobial Stewardship and Healthcare Epidemiology - date: '2022-01-01' - link: https://doi.org/hbz8bf - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/OFID/OFAC456 - title: Infectious Disease Consults of Pseudomonas aeruginosa Bloodstream - Infection and Impact on Health Outcomes - authors: - - Swetha Ramanathan - - Fritzie S Albarillo - - Margaret A Fitzpatrick - - Katie J Suda - - Linda Poggensee - - Amanda Vivo - - Martin E Evans - - Makoto Jones - - Nasia Safdar - - Chris Pfeiffer - - Bridget Smith - - Geneva Wilson - - Charlesnika T Evans - publisher: Open Forum Infectious Diseases - date: '2022-09-01' - link: https://doi.org/hbz8bg - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIAB987 - title: "Optimal Urine Culture Diagnostic Stewardship Practice\u2014Results from\ - \ an Expert Modified-Delphi Procedure" - authors: - - Kimberly C Claeys - - Barbara W Trautner - - Surbhi Leekha - - K C Coffey - - Christopher J Crnich - - Dan J Diekema - - Mohamad G Fakih - - Matthew Bidwell Goetz - - Kalpana Gupta + - Angela Weil + - Anna Jones + - Kelly Mansfield + - '**Andrew T Pavia**' + - Angie White + - '**Leisha D Nolen**' + publisher: NEJM evidence + date: '2026-05-13' + link: https://doi.org/10.1056/evidpha2600093 + type: paper + year: 2026 +- id: doi:10.1038/s41598-026-50216-8 + title: SARS-CoV-2 surveillance and vaccine effectiveness among dental healthcare + workers during the omicron surge. + authors: + - Holly Shoemaker + - Jeri L Bullock + - Kristina Stratford + - Melodie L Weller + - Wendy L Hobson + - '**Jeanmarie Mayer**' + - Yue Zhang + - Vanessa Stevens + - Stacey E Swilling + - Matthew Samore + publisher: Scientific reports + date: '2026-05-05' + link: https://doi.org/10.1038/s41598-026-50216-8 + type: paper + year: 2026 +- id: doi:10.1016/j.lana.2026.101488 + title: 'Health, economic, and equity impact of a COVID-19 mobile vaccine clinic + program in US: a cost-effectiveness analysis.' + authors: + - '**Khanh N C Duong**' + - '**Damon J A Toth**' + - Danielle T Nguyen + - Yue Zhang + - '**Richard E Nelson**' + - '**Andrew T Pavia**' + - Barbara E Jones + - Cindy Wynette - Makoto M Jones - - Luci Leykum - - Stephen Y Liang - - Lisa Pineles - - Ashley Pleiss - - Emily S Spivak - - Katie J Suda - - Jennifer M Taylor - - Chanu Rhee - - Daniel J Morgan - publisher: Clinical Infectious Diseases - date: '2021-11-29' - link: https://doi.org/hbz8bh - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ASH.2022.285 - title: 'Outpatient treatment and clinical outcomes of bacteriuria in veterans: A - retrospective cohort analysis' + - Carl Asche + - Daniel C Malone + - '**Matthew H Samore**' + - Nathorn Chaiyakunapruk + publisher: Lancet regional health. Americas + date: '2026-05-05' + link: https://doi.org/10.1016/j.lana.2026.101488 + type: paper + year: 2026 +- id: doi:10.1001/jamanetworkopen.2026.10062 + title: Primary Care Telemedicine vs In-Person Antibiotic Prescribing for Pediatric + Respiratory Tract Infections. authors: - - Suzette A. Rovelsky - - Michelle Vu - - Alexis K. Barrett - - Kenneth Bukowski - - Xiangming Wei - - Muriel Burk - - Makoto Jones - - Kelly Echevarria - - Katie J Suda - - Francesca Cunningham - - Karl J Madaras-Kelly - publisher: Antimicrobial Stewardship & Healthcare Epidemiology - date: '2022-01-01' - link: https://doi.org/hbz8bj - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.GIE.2022.04.018 - title: 'Pre-endoscopy coronavirus disease 2019 screening and severe acute respiratory - syndrome coronavirus-2 nucleic acid amplification testing in the Veterans Affairs - healthcare system: clinical practice patterns, outcomes, and relationship to procedure - volume' + - Kristin N Ray + - Samuel R Wittman + - Mary Kate Kelly + - Janani Ramachandran + - Kristin Davis + - Donna Harris + - Jennifer Steffes + - Frances M Biel + - Everly Macario + - Brigit A Hatch + - '**Julia E Szymczak**' + - Dara D Méndez + - Jonathan G Yabes + - Robert Grundmeier + - Alexander G Fiks + publisher: JAMA network open + date: '2026-05-01' + link: https://doi.org/10.1001/jamanetworkopen.2026.10062 + type: paper + year: 2026 +- id: doi:10.1002/edm2.70197 + title: Haemoglobin A1c Time-In-Range and Mortality in Adults With Diabetes. authors: - - Andrew J. Gawron - - Shahnaz Sultan - - Thomas J. Glorioso - - Sophia Califano - - Stephen M. Kralovic - - Makoto Jones - - Susan Kirsh - - Jason A. Dominitz - publisher: Gastrointestinal Endoscopy - date: '2022-09-01' - link: https://doi.org/hbz8bk - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1097/MD.0000000000030245 - title: Quantifying the breadth of antibiotic exposure in sepsis and suspected infection - using spectrum scores - authors: - - Joshua T. Smith - - Raj N. Manickam - - Fernando Barreda - - John D. Greene - - Meghana Bhimarao - - Jason Pogue - - Makoto Jones - - Laura Myers - - Hallie C. Prescott - - Vincent X. Liu - publisher: Medicine - date: '2022-10-14' - link: https://doi.org/hbz8bm - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1001/JAMAINTERNMED.2022.2291 - title: Temporal Trends in Antimicrobial Prescribing During Hospitalization for Potential - Infection and Sepsis + - Paul R Conlin + - Julia C Prentice + - David C Mohr + - Libin Zhang + - Donglin Li + - Erin Pleasants + - '**Richard E Nelson**' + - Suma Vupputuri + - Gregory A Nichols + publisher: Endocrinology, diabetes & metabolism + date: '2026-05-01' + link: https://doi.org/10.1002/edm2.70197 + type: paper + year: 2026 +- id: doi:10.1186/s12887-026-06871-x + title: Burden of laboratory-confirmed RSV hospitalization in children <5 years-of-age; + 2019-2022. authors: - - Hallie C. Prescott - - Sarah Seelye - - Xiao Qing Wang - - Cainnear K. Hogan - - Joshua T. Smith - - Patricia Kipnis - - Fernando Barreda - - John P. Donnelly - - Jason M. Pogue - - Theodore J. Iwashyna - - Makoto M. Jones - - Vincent X. Liu - publisher: JAMA Internal Medicine - date: '2022-08-01' - link: https://doi.org/gqd43x - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.AJIC.2022.01.011 - title: Treatment of extensively-drug resistant (XDR) Acinetobacter and impact on - clinical outcomes in U.S. veterans affairs (VA) medical centers + - Krow Ampofo + - Evan Heller + - Alexander Platt-Koch + - '**Per Gesteland**' + - Kaleb Miller + - Abbey Loveridge + - Lazarus Adua + - Yue Zhang + - Madelyn Ruggieri + - Yoonyoung Choi + publisher: BMC pediatrics + date: '2026-04-30' + link: https://doi.org/10.1186/s12887-026-06871-x + type: paper + year: 2026 +- id: doi:10.64898/2026.04.29.26352095 + title: Association between Weather Variables and Viral Gastroenteritis in the United + States. authors: - - Margaret A. Fitzpatrick - - Katie J. Suda - - Linda Poggensee - - Amanda Vivo - - Geneva Wilson - - Makoto M. Jones - - Martin Evans - - Nasia Safdar - - Charlesnika T. Evans - publisher: American Journal of Infection Control - date: '2022-09-01' - link: https://doi.org/hbz8bn - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1007/S11606-022-07413-8 - title: Trends in Illness Severity, Hospitalization, and Mortality for Community-Onset - Pneumonia at 118 US Veterans Affairs Medical Centers + - Natalya Alekhina + - Paola Fonseca-Romero + - '**Per H Gesteland**' + - Ben J Brintz + - Amy L Leber + - Jami T Jackson + - Jennifer Dien Bard + - Neena Kanwar + - Ara Festekjian + - Chari Larsen + - Kimberle C Chapin + - Rangaraj Selvarangan + - Sean Soisson + - '**Andrew T Pavia**' + - Daniel T Leung + publisher: medRxiv + date: '2026-04-30' + link: https://doi.org/10.64898/2026.04.29.26352095 + type: preprint + year: 2026 +- id: doi:10.1007/s10393-026-01789-3 + title: Using Serosurveys to Optimize Surveillance for Zoonotic Pathogens. authors: - - Barbara E. Jones - - Jian Ying - - Mckenna R Nevers - - Patrick R. Alba - - Olga V. Patterson - - Kelly S Peterson - - Elizabeth Rutter - - Matthew A Christensen - - Sarah Stern - - Makoto M Jones - - Adi Gundlapalli - - Nathan C Dean - - Matthew C Samore - - Tome Greene - publisher: Journal of General Internal Medicine - date: '2022-03-09' - link: https://doi.org/hbz8bp - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1001/JAMANETWORKOPEN.2021.0971 - title: Association Between Contact Precautions and Transmission of Methicillin-Resistant - Staphylococcus aureus in Veterans Affairs Hospitals + - '**Clancey E**' + - Nuismer SL + - '**Seifert SN**' + publisher: EcoHealth + date: '2026-04-25' + link: https://doi.org/10.1007/s10393-026-01789-3 + type: paper + year: 2026 +- id: doi:10.1080/13696998.2026.2658448 + title: Cost-effectiveness analysis of atezolizumab and bevacizumab as first-line + systemic therapy in unresectable hepatocellular carcinoma in Malaysia. authors: - - Karim Khader - - Alun Thomas - - Vanessa Stevens - - Lindsay Visnovsky - - McKenna Nevers - - Damon Toth - - Lindsay T. Keegan - - Makoto Jones - - Michael Rubin - - Matthew H. Samore - publisher: JAMA Network Open - date: '2021-03-15' - link: https://doi.org/gmx7wd - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIAA1582 - title: Attributable Cost of Healthcare-Associated Methicillin-Resistant Staphylococcus - aureus Infection in a Long-term Care Center + - Wong YF + - Mohamed R + - Sulaiman Shah AA + - '**Chaiyakunapruk N**' + - Patikorn C + publisher: Journal of medical economics + date: '2026-04-25' + link: https://doi.org/10.1080/13696998.2026.2658448 + type: paper + year: 2026 +- id: doi:10.1017/s0266462326103742 + title: How users perceive meta-analysis of economic evaluations. authors: - - Richard E Nelson - - Ebbing Lautenbach - - Nelson Chang - - Makoto Jones - - Tina Willson - - Michael David - - Darren Linkin - - Henry Glick - - Jalpa A Doshi - - Vanessa W Stevens - publisher: Clinical Infectious Diseases - date: '2021-01-15' - link: https://doi.org/gh63j3 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.2196/26719 - title: 'Automated Travel History Extraction From Clinical Notes for Informing the - Detection of Emergent Infectious Disease Events: Algorithm Development and Validation' + - Veettil SK + - Mahmood A + - Meraz M + - Youngkong S + - Dhippayom T + - '**Chaiyakunapruk N**' + publisher: International journal of technology assessment in health care + date: '2026-04-22' + link: https://doi.org/10.1017/s0266462326103742 + type: paper + year: 2026 +- id: doi:10.1016/j.lana.2026.101469 + title: 'Return on investment of community health workers in the United States: a + systematic review.' authors: - - Kelly S Peterson - - Julia Lewis - - Olga V Patterson - - Alec B Chapman - - Daniel W Denhalter - - Patricia A Lye - - Vanessa W Stevens - - Shantini D Gamage - - Gary A Roselle - - Katherine S Wallace - - Makoto Jones - publisher: JMIR Public Health and Surveillance - date: '2021-03-24' - link: https://doi.org/hbz8bq - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2020.1323 - title: "Carbapenem-resistant Enterobacteriaceae epidemiology in Veterans\u2019\ - \ Affairs medical centers varies by facility characteristics" - authors: - - Marissa S. Wirth - - Margaret A. Fitzpatrick - - Katie J. Suda - - Geneva M. Wilson - - Swetha Ramanathan - - Martin E. Evans - - Makoto M. Jones - - Christopher D. Pfeiffer - - Charlesnika T. Evans - publisher: Infection Control & Hospital Epidemiology - date: '2020-12-11' - link: https://doi.org/hbz8br - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1513/ANNALSATS.202011-1372OC - title: Computerized Mortality Prediction for Community-acquired Pneumonia at 117 - Veterans Affairs Medical Centers + - '**Rashid M**' + - Fu M + - Jitareewong P + - Cho JY + - '**Nelson RE**' + - Ceballos RM + - Saokaew S + - '**Chaiyakunapruk N**' + publisher: Lancet regional health. Americas + date: '2026-04-21' + link: https://doi.org/10.1016/j.lana.2026.101469 + type: paper + year: 2026 +- id: doi:10.1002/ece3.73467 + title: 'Roads, Soil, Snow, and Topography Influence Genetic Connectivity: A Machine + Learning Approach for a Peripheral American Badger Population.' authors: - - Barbara E. Jones - - Jian Ying - - McKenna Nevers - - Patrick R. Alba - - Tao He - - Olga V. Patterson - - Makoto M. Jones - - Vanessa Stevens - - Jincheng Shen - - Jeffrey Humpherys - - Kelly S. Peterson - - Elizabeth D. Rutter - - Adi V. Gundlapalli - - Charlene R. Weir - - Nathan C. Dean - - Michael J. Fine - - Matthew C. Samore - - Tom H. Greene - publisher: Annals of the American Thoracic Society - date: '2021-07-01' - link: https://doi.org/hbz8bs - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIAA1591 - title: Expanding an Economic Evaluation of the Veterans Affairs (VA) Methicillin-resistantStaphylococcus - aureus(MRSA) Prevention Initiative to Include Prevention of Infections From - Other Pathogens + - Palm EC + - '**Landguth EL**' + - Lamy K + - Gorrell JC + - Weir RD + - Richardson EL + - Forbes KJ + - Davis H + - Burgar JM + publisher: Ecology and evolution + date: '2026-04-16' + link: https://doi.org/10.1002/ece3.73467 + type: paper + year: 2026 +- id: doi:10.1371/journal.pmed.1004712 + title: 'Clostridioides difficile colonization amplification despite limited in-hospital + transmission: A modeling study.' authors: - - Richard E Nelson - - Michihiko Goto - - Matthew H Samore - - Makoto Jones - - Vanessa W Stevens - - Martin E Evans - - Marin L Schweizer - - Eli N Perencevich - - Michael A Rubin - publisher: Clinical Infectious Diseases - date: '2021-01-15' - link: https://doi.org/hbz8bt - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2020.1277 - title: "Inpatient antibiotic utilization in the Veterans\u2019 Health Administration\ - \ during the coronavirus disease 2019 (COVID-19) pandemic" - authors: - - Thomas D. Dieringer - - Daisuke Furukawa - - Christopher J. Graber - - Vanessa W. Stevens - - Makoto M. Jones - - Michael A. Rubin - - Matthew Bidwell Goetz - publisher: Infection Control & Hospital Epidemiology - date: '2020-10-20' - link: https://doi.org/gpxxcz - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.2147/CLEP.S335621 - title: Positive Predictive Value of COVID-19 ICD-10 Diagnosis Codes Across Calendar - Time and Clinical Setting + - De-la-Rosa-Martinez D + - Porco TC + - Hazel A + - Liu X + - '**Khader K**' + - Blumberg S + publisher: PLoS medicine + date: '2026-04-13' + link: https://doi.org/10.1371/journal.pmed.1004712 + type: paper + year: 2026 +- id: doi:10.1186/s43058-026-00915-0 + title: 'Implementation of a pediatric antibiotic stewardship intervention across + a large integrated health system: protocol to optimize antibiotic selection and + prescription duration for acute respiratory tract infections in children.' authors: - - Kristine E Lynch - - Benjamin Viernes - - Elise Gatsby - - Scott L DuVall - - Barbara E Jones - - "Tam\xE1ra L Box" - - Craig Kreisler - - Makoto Jones - publisher: Clinical Epidemiology - date: '2021-10-01' - link: https://doi.org/gpcbw4 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.JBI.2021.103903 - title: 'ReHouSED: A novel measurement of Veteran housing stability using natural - language processing' + - Timothy R Fowles + - Payal K Patel + - Allan M Seibert + - Adam L Hersh + - Tom Belnap + - Bridgett Hanna + - '**Julia E Szymczak**' + - Heather T Keenan + - Bradley J Barney + - Rajendu Srivastava + publisher: Implementation science communications + date: '2026-04-09' + link: https://doi.org/10.1186/s43058-026-00915-0 + type: paper + year: 2026 +- id: doi:10.1111/1475-6773.70114 + title: 'Expanding Access to Methadone Treatment for Opioid Use Disorder: Measurement + and Policy Considerations for the Veterans Health Administration.' authors: - - Alec B Chapman - - Audrey Jones - - A Taylor Kelley - - Barbara Jones - - Lori Gawron - - Ann Elizabeth Montgomery - - Thomas Byrne - - Ying Suo - - James Cook - - Warren Pettey - - Kelly Peterson - - Makoto Jones - - Richard Nelson - publisher: Journal of Biomedical Informatics - date: '2021-10-01' - link: https://doi.org/gmq7rx - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIAB415 - title: Risk Factors Associated With Carbapenemase-Producing Carbapenem-Resistant - Enterobacteriaceae Positive Cultures in a Cohort of US Veterans + - Vanneman ME + - Rahim FG + - Amuan ME + - '**Nelson RE**' + - Gordon AJ + - Jones AL + publisher: Health services research + date: '2026-04-01' + link: https://doi.org/10.1111/1475-6773.70114 + type: paper + year: 2026 +- id: doi:10.1001/jamanetworkopen.2026.9504 + title: Association Between Peer Comparison Feedback and Hospitalist Antibiotic Prescribing. authors: - - Geneva M Wilson - - Katie J Suda - - Margaret A Fitzpatrick - - Brian Bartle - - Christopher D Pfeiffer - - Makoto Jones - - Michael A Rubin - - Eli Perencevich - - Martin Evans - - Charlesnika T Evans - publisher: Clinical Infectious Diseases - date: '2021-05-11' - link: https://doi.org/gqbdb4 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIAA1604 - title: 'Simulated Adoption of 2019 Community-Acquired Pneumonia Guidelines Across - 114 Veterans Affairs Medical Centers: Estimated Impact on Culturing and Antibiotic - Selection in Hospitalized Patients' + - Lucy S Witt + - Radhika Prakash-Asrani + - K Ashley Jones + - C Christina Mehta + - Zanthia Wiley + - Jesse T Jacob + - Hasan F Shabbir + - Julianne Gent + - Chad Robichaux + - Jessica Howard-Anderson + - Sujit Suchindran + - '**Julia E Szymczak**' + - Raymund B Dantes + - Scott K Fridkin + publisher: JAMA network open + date: '2026-04-01' + link: https://doi.org/10.1001/jamanetworkopen.2026.9504 + type: paper + year: 2026 +- id: doi:10.1136/bmjph-2025-003369 + title: 'Effectiveness of mobile vaccine clinics on COVID-19 vaccination uptake in + the USA: an observational study.' authors: - - Matthew A Christensen - - McKenna Nevers - - Jian Ying - - Candace Haroldsen - - Vanessa Stevens + - '**Khanh N C Duong**' + - Yue Zhang + - '**Richard E Nelson**' + - '**Andrew T Pavia**' + - Barbara E Jones + - Danielle T Nguyen + - Cindy Wynette - Makoto M Jones - - Peter M Yarbrough - - Matthew Bidwell Goetz - - Marcos I Restrepo - - Karl Madaras-Kelly - - Matthew H Samore - - Barbara Ellen Jones - publisher: Clinical Infectious Diseases - date: '2021-01-15' - link: https://doi.org/gt58rf - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.AJIC.2021.01.015 - title: 'Social dynamics of a population-level dashboard for antimicrobial stewardship: - A qualitative analysis' + - '**Matthew H Samore**' + - '**Nathorn Chaiyakunapruk**' + publisher: BMJ public health + date: '2026-03-30' + link: https://doi.org/10.1136/bmjph-2025-003369 + type: paper + year: 2026 +- id: doi:10.1017/ice.2026.10405 + title: 'Vaccines for healthcare personnel: a core safety measure a position statement + from the Society for Healthcare Epidemiology of America (SHEA).' authors: - - Peter Taber - - Charlene Weir - - Jorie M. Butler - - Christopher J. Graber - - Makoto M. Jones - - Karl Madaras-Kelly - - Yue Zhang - - Ann F. Chou - - Matthew H. Samore - - Matthew Bidwell Goetz - - Peter A. Glassman - publisher: American Journal of Infection Control - date: '2021-07-01' - link: https://doi.org/g38bxh - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1001/JAMANETWORKOPEN.2021.23950 - title: Temporal Trends and Hospital Variation in Time-to-Antibiotics Among Veterans - Hospitalized With Sepsis + - David J Weber + - Grace M Lee + - Erica S Shenoy + - Deborah S Yokoe + - Rajalakshmi Ananthanarayanan + - Carolee Estelle + - Jesse T Jacob + - Jennie H Kwon + - Lisa L Maragakis + - Rekha Murthy + - Priya Nori + - Ann-Christine Nyquist + - Catherine Passaretti + - Lisa Saiman + - '**Julia E Szymczak**' + - Thomas R Talbot + publisher: Infection control and hospital epidemiology + date: '2026-03-26' + link: https://doi.org/10.1017/ice.2026.10405 + type: paper + year: 2026 +- id: doi:10.1186/s13012-026-01498-z + title: 'Comparing two strategies to support the implementation of evidence-based + practices for substance use disorders in VA''s permanent supportive housing program: + a protocol for a type 3 hybrid cluster-randomized controlled trial.' authors: - - Max T. Wayne - - Sarah Seelye - - Daniel Molling - - Xiao Qing Wang - - John P. Donnelly - - Cainnear K. Hogan - - Makoto M. Jones - - Theodore J. Iwashyna - - Vincent X. Liu - - Hallie C. Prescott - publisher: JAMA Network Open - date: '2021-09-07' - link: https://doi.org/hbz8bv - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1109/ICHI52183.2021.00048 - title: Topic-to-Topic Modeling for COVID-19 Mortality + - Sonya Gabrielian + - Evelyn T Chang + - Emily B H Treichler + - Jenny Barnard + - '**Richard E Nelson**' + - Michelle S Wong + - Nicholas J Jackson + - Erin P Finley + publisher: 'Implementation science : IS' + date: '2026-03-24' + link: https://doi.org/10.1186/s13012-026-01498-z + type: paper + year: 2026 +- id: doi:10.1111/dom.70698 + title: 'GLP-1 Receptor/Dual Agonists for Weight Loss: A Systematic Review and Network + Meta-Analysis of RCTs.' authors: - - Jeffrey Humpherys - - Ahmad Halwani - - Barbara E Jones - - Makoto M Jones - - Matthew H Samore - - Sadiqa Mahmood - - Dale Sanders - publisher: 2021 IEEE 9th International Conference on Healthcare Informatics (ICHI) - date: '2021-08-01' - link: https://doi.org/hbz8bw - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2020.632 - title: "Antimicrobial Stewardship Programs and Antibiotic Usage and Resistance in\ - \ Department of Veterans\u2019 Affairs Medical Centers" + - Vienghirun J + - Sawangjit R + - Suttiruksa S + - '**Chaiyakunapruk N**' + - Jinathongthai P + - Khunti K + - Lee SWH + publisher: Diabetes, obesity & metabolism + date: '2026-03-23' + link: https://doi.org/10.1111/dom.70698 + type: paper + year: 2026 +- id: doi:10.1111/aor.70117 + title: Hospital Costs Associated With Mechanical Left Ventricular Unloading Devices + During VA ECMO for Adult Cardiogenic Shock. authors: - - Hope Palalay - - Allison Kelly - - Loretta Simbartl - - Shantini Gamage - - Makoto Jones - - Gary Roselle - publisher: Infection Control & Hospital Epidemiology - date: '2020-10-01' - link: https://doi.org/hbz8bx - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2020.635 - title: Appropriateness of Anti-MRSA Therapy in Hospitalized Patients With Suspected - Community-Onset Infections + - Hockstein MA + - Horns JJ + - Hanff T + - Taleb I + - Selzman C + - Drakos S + - '**Nelson R**' + - Tonna JE + publisher: Artificial organs + date: '2026-03-18' + link: https://doi.org/10.1111/aor.70117 + type: paper + year: 2026 +- id: doi:10.1007/s10903-026-01890-3 + title: 'Birthplace Implications of COVID-19 Mortality in Utah 2020-2023: A Cross-sectional + Study.' authors: - - Sydney Springer - - Muriel Burk - - Kelly Echevarria - - Makoto Jones - - Matthew Goetz - publisher: Infection Control & Hospital Epidemiology - date: '2020-10-01' - link: https://doi.org/hbz8bz - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000509275600050 - title: CHANGES IN DIAGNOSIS FOR PNEUMONIA AT VA EMERGENCY DEPARTMENTS - authors: [] - publisher: MEDICAL DECISION MAKING - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000509275600050 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1109/CBMS49503.2020.00040 - title: Characterizing Sub-Cohorts via Data Normalization and Representation Learning + - Daniel Knox + - Natalia Arizmendez + - Megan Cahn + - Chun-Pin Esther Chang + - Zhe David Yu + - '**Kimberley Shoaf**' + - Sharon Talboys + - Mia Hashibe + publisher: Journal of immigrant and minority health + date: '2026-03-16' + link: https://doi.org/10.1007/s10903-026-01890-3 + type: paper + year: 2026 +- id: doi:10.1002/acr.70023 + title: COVID-19 Vaccination Is Not Associated With the Development of Idiopathic + Inflammatory Myositis in US Veterans. authors: - - Everett Rush - - Ozgur Ozmen - - Kathryn Knight - - Byung Park - - Clifton Baker - - Makoto Jones - - Merry Ward - - Jonathan Nebeker - publisher: 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems - (CBMS) - date: '2020-07-01' - link: https://doi.org/hbz8b2 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1109/CBMS49503.2020.00092 - title: 'Converting Clinical Pathways to BPM+ Standards: A Case Study in Stable Ischemic - Heart Disease' + - Hernández C + - Schlesinger N + - Rojas J + - Walsh JA + - Braaten TJ + - Kunkel GA + - '**Jones M**' + - Sauer BC + - Facelli J + - Cannon GW + - Lebiedz-Odrobina D + publisher: Arthritis care & research + date: '2026-03-13' + link: https://doi.org/10.1002/acr.70023 + type: paper + year: 2026 +- id: doi:10.1016/j.ajic.2026.03.005 + title: 'Outpatient antibiotic prescribing among Utah Medicaid recipients: A 4-year + population-based analysis.' authors: - - Junghoon Chae - - Byung Hoon Park - - Makoto Jones - - Merry Ward - - Jonathan Nebeker - publisher: 2020 IEEE 33rd International Symposium on Computer-Based Medical Systems - (CBMS) - date: '2020-07-01' - link: https://doi.org/gtwqhm - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIZ941 - title: Decreases in Antimicrobial Use Associated With Multihospital Implementation - of Electronic Antimicrobial Stewardship Tools + - Tariq Mosleh + - Angela Weil + - Devin Beard + - April Clements + - Christina Radloff + - '**Leisha D Nolen**' + - '**Karim Khader**' + - Elle Stevenson + - Susan Cheever + - Sarah Rigby + publisher: American journal of infection control + date: '2026-03-12' + link: https://doi.org/10.1016/j.ajic.2026.03.005 + type: paper + year: 2026 +- id: doi:10.1371/journal.pntd.0014065 + title: 'Comparative susceptibility of Old World and New World bat cell lines to + Zika virus: Insights into viral replication and inflammatory responses.' authors: - - Christopher J Graber - - Makoto M Jones - - Matthew Bidwell Goetz - - Karl Madaras-Kelly - - Yue Zhang - - Jorie M Butler - - Charlene Weir - - Ann F Chou - - Sarah Y Youn + - Brown AJ + - Fagre AC + - Gilson J + - Horton J + - Allen JN + - Rivero R + - Karimi M + - Speranza E + - Letko M + - '**Seifert SN**' + publisher: PLoS neglected tropical diseases + date: '2026-03-06' + link: https://doi.org/10.1371/journal.pntd.0014065 + type: paper + year: 2026 +- id: doi:10.32614/cran.package.imaginarycss + title: 'imaginarycss: Tools for Studying Imaginary Cognitive Social Structure' + authors: + - Sima Najafzadehkhoei + - '**George Vega Yon**' + - Kyosuke Tanaka + publisher: 'CRAN: Contributed Packages' + date: '2026-03-04' + link: http://dx.doi.org/10.32614/cran.package.imaginarycss + type: paper + year: 2026 +- id: doi:10.1001/jamanetworkopen.2026.1278 + title: Shiga Toxin-Producing Escherichia coli Outbreak in Canadian Daycare Centers. + authors: + - Mohamed Eltorki + - Oluwatimilehin O Ajayi + - Jina Seok + - Jianling Xie + - Francesco A Rizzuti + - Byron M Berenger + - Phillip I Tarr + - '**Andrew T Pavia**' + - Kate Snedeker + - Silviu Grisaru + - Otto G Vanderkooi + - Linda Chui + - Gillian A M Tarr + - Gemma Vomiero + - Stephen B Freedman + publisher: JAMA network open + date: '2026-03-02' + link: https://doi.org/10.1001/jamanetworkopen.2026.1278 + type: paper + year: 2026 +- id: doi:10.1093/cid/ciaf619 + title: Using Generative Artificial Intelligence for Healthcare-Associated Infection + Surveillance. + authors: + - Morgan DJ + - Goodman KE + - Branch-Elliman W + - Shenoy ES + - Salinas JL + - '**Jones M**' + - Singh SP + - Schrank GM + - Schrank GM + - Pineles L + - AlShanqeeti S + - Harris AD + - Klein E + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2026-03-01' + link: https://doi.org/10.1093/cid/ciaf619 + type: paper + year: 2026 +- id: doi:10.1111/jrh.70167 + title: Differential Impact of the Supportive Services for Veteran Families (SSVF) + Program on Veterans Affairs Healthcare Utilization and Costs Among Rural and Urban + Veterans Experiencing Housing Instability. + authors: + - Minkyoung Yoo + - Alec B Chapman + - Ying Suo + - Thomas Byrne + - Ann E Montgomery + - '**Richard E Nelson**' + publisher: 'The Journal of rural health : official journal of the American Rural + Health Association and the National Rural Health Care Association' + date: '2026-03-01' + link: https://doi.org/10.1111/jrh.70167 + type: paper + year: 2026 +- id: doi:10.1111/mec.70328 + title: 'Climate Extremes, Genomic Coverage, and Taxonomy Shape the Detection of + Adaptation: A Systematic Review of GEA Studies for the Kingdom Animalia.' + authors: + - Williams AK + - Ruppert OM + - '**Landguth EL**' + publisher: Molecular ecology + date: '2026-03-01' + link: https://doi.org/10.1111/mec.70328 + type: paper + year: 2026 +- id: doi:10.1016/j.ajic.2026.02.239 + title: 'Copper (Cu) for Reducing Environmental Healthcare Associated Infections + (CuRE HAI): A 10-year pragmatic copper surface implementation study.' + authors: + - Marjory D Williams + - Angelia Bridges + - John D Coppin + - Piyali Chatterjee + - Hosoon Choi + - Thanuri Navarathna + - Morgan Bennett + - '**Richard E Nelson**' + - Emma Brackens + - Lynn Mayo + - Chetan Jinadatha + publisher: American journal of infection control + date: '2026-02-28' + link: https://doi.org/10.1016/j.ajic.2026.02.239 + type: paper + year: 2026 +- id: doi:10.2196/preprints.94240 + title: 'Practical Guidelines and Reflections on Building Public Health Software: + A Measles Case Study (Preprint)' + authors: + - '**George G Vega Yon**' + - Delaney Thornton + - Andrew Redd + - Andrew Pulsipher + - Damon Toth + - Egenia Dorsan + - Lior Rennert + - Kaitlyn Johnson + - Laura F White + - Randon Gruninger + - Leisha D Nolen - Matthew H Samore - - Peter A Glassman - publisher: Clinical Infectious Diseases - date: '2019-11-01' - link: https://doi.org/g4h36v - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2020.473 - title: Development of an Electronic Tool to Measure Daily Appropriateness of Inpatient - Antibacterial Use + publisher: Preprint + date: '2026-02-27' + link: http://dx.doi.org/10.2196/preprints.94240 + type: preprint + year: 2026 +- id: doi:10.64898/2026.02.23.26346887 + title: Bayesian generative modeling for heterogeneous wastewater data applied to + COVID-19 forecasting authors: - - Vanessa Stevens - - Pamela Belperio + - Johnson KE + - '**Vega Yon G**' + - Brand SP + - Zelaya COB + - Bayer D + - Volkov I + - Susswein Z + - Magee A + - Gostic KM + - English KM + - Ghinai I + - Hamlet A + - Olesen SW + - Pulliam JR + - Abbott S + - Morris DH + publisher: medRxiv + date: '2026-02-24' + link: https://doi.org/10.64898/2026.02.23.26346887 + type: preprint + year: 2026 +- id: doi:10.32614/cran.package.epiworldrcalibrate + title: 'epiworldRcalibrate: Fast and Effortless Calibration of Agent-Based Models + using Machine Learning' + authors: + - Sima Najafzadehkhoei + - '**George Vega Yon**' + - Jake Wagoner + - Bernardo Modenesi + publisher: 'CRAN: Contributed Packages' + date: '2026-02-18' + link: http://dx.doi.org/10.32614/cran.package.epiworldrcalibrate + type: paper + year: 2026 +- id: doi:10.1371/journal.pcbi.1013980 + title: Quantifying the population-level impact of expanded antibiotic treatment + for cholera outbreak management. + authors: + - Ahmed SM + - LaPrete CR + - Ciglenecki I + - Azman A + - Leung DT + - '**Keegan LT**' + publisher: PLoS computational biology + date: '2026-02-18' + link: https://doi.org/10.1371/journal.pcbi.1013980 + type: paper + year: 2026 +- id: doi:10.1145/3770762.3772577 + title: Examining the Impact of Instructor-Client Mentoring Models in CS Capstone + Courses at a Public University + authors: + - Ananth A. Jillepalli + - James Crabb + - David Rice + - '**Assefaw H. Gebremedhin**' + publisher: Proceedings of the 57th ACM Technical Symposium on Computer Science Education + V.1 + date: '2026-02-18' + link: https://doi.org/10.1145/3770762.3772577 + type: paper + year: 2026 +- id: doi:10.1145/3770762.3772578 + title: Effects of Project Type on CS Capstone Courses + authors: + - Ananth A. Jillepalli + - David Rice + - James Crabb + - '**Assefaw H. Gebremedhin**' + publisher: Proceedings of the 57th ACM Technical Symposium on Computer Science Education + V.1 + date: '2026-02-18' + link: https://doi.org/10.1145/3770762.3772578 + type: paper + year: 2026 +- id: doi:10.32614/cran.package.measles + title: 'measles: Measles Epidemiological Models' + authors: + - '**George Vega Yon**' + publisher: 'CRAN: Contributed Packages' + date: '2026-02-12' + link: http://dx.doi.org/10.32614/cran.package.measles + type: paper + year: 2026 +- id: doi:10.1017/ice.2025.10335 + title: Projected impact of a pathogen reduction intervention on carbapenem-resistant + Enterobacterales bloodstream infections and deaths in the United States. + authors: + - Wolford H + - Khan MA + - Paul P + - '**Toth DJA**' + - Octaria R + - Healy JM + - Jacobs Slifka K + - Jernigan JA + - Kallen A + - McDonald LC + - Craig M + - Srinivasan A + - Walters MS + - Slayton RB + publisher: Infection control and hospital epidemiology + date: '2026-02-10' + link: https://doi.org/10.1017/ice.2025.10335 + type: paper + year: 2026 +- id: doi:10.32614/cran.package.multigroup.vaccine + title: 'multigroup.vaccine: Analyze Outbreak Models of Multi-Group Populations with + Vaccination' + authors: + - Damon Toth + - Jake Wagoner + - Willy Ray + publisher: 'CRAN: Contributed Packages' + date: '2026-02-09' + link: http://dx.doi.org/10.32614/cran.package.multigroup.vaccine + type: paper + year: 2026 +- id: doi:10.1001/jamanetworkopen.2025.56945 + title: Physician Variation in Early Sepsis Management. + authors: + - Ithan D Peltan + - Danielle Groat + - Jorie Butler + - Joseph R Bledsoe + - Blessing S Ofori-Atta + - Chaorong Wu + - Angela P Presson + - Tom H Greene + - Matthew A Christensen + - Fiona M Schroeder + - M Blakely May + - '**Matthew H Samore**' + - Catherine L Hough + - Samuel M Brown + publisher: JAMA network open + date: '2026-02-02' + link: https://doi.org/10.1001/jamanetworkopen.2025.56945 + type: paper + year: 2026 +- id: doi:10.1109/tvcg.2025.3626128 + title: 'Visual Stenography: Feature Recreation and Preservation in Sketches of Noisy + Line Charts.' + authors: + - Proma RA + - Correll M + - Quadri GJ + - '**Rosen P**' + publisher: IEEE transactions on visualization and computer graphics + date: '2026-02-01' + link: https://doi.org/10.1109/tvcg.2025.3626128 + type: paper + year: 2026 +- id: doi:10.1016/j.epidem.2026.100885 + title: A vision for estimation of the instantaneous reproductive number. + authors: + - Milando CW + - '**Yon GGV**' + - Johnson K + - Urbinati A + - St-Onge G + - Klein B + - Cori A + - White LF + - Collabathon participants + publisher: Epidemics + date: '2026-01-29' + link: https://doi.org/10.1016/j.epidem.2026.100885 + type: paper + year: 2026 +- id: doi:10.1098/rspb.2025.2193 + title: 'Interepidemic Rift Valley fever in East Africa: the recent risk landscape + and projected impacts of global change.' + authors: + - Eskew EA + - '**Clancey E**' + - Singh D + - Situma S + - Nyakarahuka L + - Njenga MK + - Nuismer SL + publisher: Proceedings. Biological sciences + date: '2026-01-28' + link: https://doi.org/10.1098/rspb.2025.2193 + type: paper + year: 2026 +- id: doi:10.4018/979-8-3373-6400-1.ch010 + title: Machine Learning in Drug Repurposing + authors: + - Gouri Nair + - '**Muhammed Rashid**' + - Najaf Farooqui + - K Spandana + - Ummai Salma + - B. A. Bharathi + - Christy Thomas + - Ruksana Begum + - G. N. S. Hema Sree + publisher: Advances in Computational Intelligence and Robotics + date: '2026-01-22' + link: https://doi.org/10.4018/979-8-3373-6400-1.ch010 + type: paper + year: 2026 +- id: doi:10.1093/infdis/jiaf417 + title: Hyperendemicity of Rift Valley Fever in Southwestern Uganda Associated With + the Rapidly Evolving Lineage C Viruses. + authors: + - Bakamutumaho B + - Juma J + - '**Clancey E**' + - Nyakarahuka L + - Situma S + - Odinoh R + - Dawa J + - Nasimiyu C + - Eskew EA + - Balinandi S + - Mulei S + - Kayiwa J + - Klena JD + - Shoemaker TR + - Whitmer SLM + - Montgomery JM + - Schieffelin J + - Lutwama J + - Muruta A + - Bosa HK + - Nuismer SL + - Oyola SO + - Breiman RF + - Njenga MK + publisher: The Journal of infectious diseases + date: '2026-01-17' + link: https://doi.org/10.1093/infdis/jiaf417 + type: paper + year: 2026 +- id: doi:10.1093/jpids/piaf111 + title: Cost-effectiveness analysis of a text message system for COVID-19 testing + for K-12 school communities. + authors: + - Maura Dougherty + - Yelena P Wu + - Leighann Kolp + - Hannah L Brady + - Tammy K Stump + - Tatyana V Kuzmenko + - Minkyoung Yoo + - Jonathan Chipman + - Guilherme Del Fiol + - Kimberly A Kaphingst + - Adam L Hersh + - Kelly J Lundberg + - Brian Orleans + - Jennifer Wirth + - David W Wetter + - '**Richard E Nelson**' + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2026-01-17' + link: https://doi.org/10.1093/jpids/piaf111 + type: paper + year: 2026 +- id: doi:10.1109/tvcg.2025.3633896 + title: 'ReVISit 2: A Full Experiment Life Cycle User Study Framework' + authors: + - Cutler Z + - Wilburn J + - Shrestha H + - Ding Y + - Bollen B + - Nadib KA + - He T + - McNutt A + - Harrison L + - '**Lex A**' + publisher: IEEE Transactions on Visualization and Computer Graphics + date: '2026-01-16' + link: http://dx.doi.org/10.1109/tvcg.2025.3633896 + type: paper + year: 2026 +- id: doi:10.1016/j.puhe.2026.106156 + title: COVID-19 outcomes among individuals with substance use disorders. + authors: + - Chun-Pin Esther Chang + - Daniel Knox + - Zhe David Yu + - '**Kimberley Shoaf**' + - Sharon L Talboys + - Mia Hashibe + publisher: Public health + date: '2026-01-16' + link: https://doi.org/10.1016/j.puhe.2026.106156 + type: paper + year: 2026 +- id: doi:10.1016/j.xkme.2026.101261 + title: Cost-Effectiveness Analysis of Artificial Intelligence-Driven Risk Stratification + in Patients With Diabetic Kidney Disease in the US Veterans Population. + authors: + - Jyotirmoy Sarker + - Abdullah I Abdelaziz + - Jacob Crook + - '**Richard E Nelson**' + - Joanne LaFleur + - Heather Nyman + - Chao-Chin Lu + - Kibum Kim + publisher: Kidney medicine + date: '2026-01-12' + link: https://doi.org/10.1016/j.xkme.2026.101261 + type: paper + year: 2026 +- id: doi:10.1093/ofid/ofaf695.1299 + title: P-1104. Multidrug-Resistant Organism (MDRO)-Contaminated Mobile Equipment + Networks in Skilled Nursing Facilities + authors: + - Lindsay D Visnovsky + - Molly Leecaster + - '**George G Vega Yon**' + - Catherine M Loc-Carrillo + - Egenia Dorsan + - Tavis Huber + - Styn M Jamu + - Kristina Stratford + - Matthew H Samore + - Frank A Drews + publisher: Open Forum Infectious Diseases + date: '2026-01-11' + link: http://dx.doi.org/10.1093/ofid/ofaf695.1299 + type: paper + year: 2026 +- id: doi:10.1128/spectrum.03408-25 + title: Clostridioides difficile clinical diagnostic test methods and results are + associated with recovery of C. difficile by stool culture. + authors: + - Andrew M Skinner + - Alice Y Guh + - Laurica A Petrella + - Susan Sambol + - Adam Cheknis + - Stuart Johnson + - Christopher A Czaja + - Helen Johnston + - Elizabeth Basiliere + - Robin A Dhonau + - Lauren Korhonen + - Ashley L Paulick + - '**Matthew H Samore**' + - Michelle Adamczyk + - Amy S Gargis + - Dale N Gerding + publisher: Microbiology spectrum + date: '2026-01-09' + link: https://doi.org/10.1128/spectrum.03408-25 + type: paper + year: 2026 +- id: doi:10.1001/jamanetworkopen.2025.49620 + title: Improving Discharge Antibiotic Use via Prospective Audit and Feedback-The + Importance of Contextual Variation. + authors: + - '**Julia E Szymczak**' + - Valerie M Vaughn + - Adam L Hersh + publisher: JAMA network open + date: '2026-01-02' + link: https://doi.org/10.1001/jamanetworkopen.2025.49620 + type: paper + year: 2026 +- id: doi:10.1001/jamahealthforum.2025.6417 + title: Health Care Outcomes of Homelessness Prevention Programs in Veterans Experiencing + Housing Instability. + authors: + - '**Richard E Nelson**' + - Alec B Chapman + - Ann Elizabeth Montgomery + - Ying Suo + - Atim Effiong + - Christa Shorter + - Tom Greene + - Jack Tsai + - Lillian Gelberg + - Stefan G Kertesz + - Thomas Byrne + publisher: JAMA health forum + date: '2026-01-02' + link: https://doi.org/10.1001/jamahealthforum.2025.6417 + type: paper + year: 2026 +- id: doi:10.2139/ssrn.6429806 + title: Simulating the Landscape Eco-evolution of Host-pathogen Systems with CDMetaPOP + authors: + - '**Erin Landguth**' + - Allison Williams + - Marissa Roseman + - Miracle Amadi + - Baylor Fain + - Marcel Kouete + - Rhys A. Farrer + - Amy J. Haeseler + - Orly Razgour + - Chris Richardson + - Byron Weckworth + - Julie Weckworth + - Flora Whiting-Fawcett + - Duncan Wilson + - Casey C. Day + publisher: Preprint + date: '2026-01-01' + link: https://doi.org/10.2139/ssrn.6429806 + type: preprint + year: 2026 +- id: doi:10.1016/j.cegh.2025.102282 + title: 'Low dose corticosteroid for a longer duration at an early phase: A potentially + optimal dosage regimen for the management of ARDS' + authors: + - '**Muhammed Rashid**' + - Sreedharan Nair + - Pooja Gopal Poojari + - Vishal Shanbhag + - Raviraja V. Acharya + - Sohil Khan + - Girish Thunga + publisher: Clinical Epidemiology and Global Health + date: '2026-01-01' + link: https://doi.org/10.1016/j.cegh.2025.102282 + type: paper + year: 2026 +- id: pmid:42569579 + title: 'Communication and Coordination in a VA Rapid Rehousing and Homelessness + Prevention Program: A Qualitative Study.' + authors: + - Tania Velasquez + - Ann Elizabeth Montgomery + - Thomas Byrne + - Warren Pettey + - Ly Do + - Elisabeth Kimball + - Patrick Galyean + - Kennedi Bloomquist + - Ying Suo + - Atim Effiong + - '**Richard E Nelson**' + - Susan Zickmund + publisher: Cityscape (Washington, D.C.) + date: '2026-01-01' + link: https://pubmed.ncbi.nlm.nih.gov/42569579/ + type: paper + year: 2026 +- id: doi:10.17480/psk.2025.69.6.529 + title: Systematic Review and Meta-Analysis of Lurasidone for the Treatment of Schizophrenia + Focusing on Endpoints Related to Treatment Goals + authors: + - The Pharmaceutical Society Of Korea + - Siin Kim Siin Kim + - Miryoung Kim Miryoung Kim + - '**Haeseon Lee Haeseon Lee**' + - Kyung Eun Lee Kyung Eun Lee + - Hae Sun Suh Hae Sun Suh + publisher: Yakhak Hoeji + date: '2025-12-30' + link: http://dx.doi.org/10.17480/psk.2025.69.6.529 + type: paper + year: 2025 +- id: doi:10.1097/htr.0000000000001067 + title: A Qualitative Study of Collegiate Student-Athlete Experiences of Recovery + After Concussion. + authors: + - Bernadette A D'Alonzo + - Andrea L C Schneider + - Anthony Erz + - Christina L Master + - Ian J Barnett + - Roy H Hamilton + - Douglas J Wiebe + - '**Julia E Szymczak**' + publisher: The Journal of head trauma rehabilitation + date: '2025-12-29' + link: https://doi.org/10.1097/htr.0000000000001067 + type: paper + year: 2025 +- id: doi:10.1017/ash.2025.10262 + title: Society for Healthcare Epidemiology of America supports environmental stewardship + and sustainability while protecting patients and healthcare personnel position + statement of the SHEA Board. + authors: + - David J Weber + - Priya Nori + - Rajalakshmi Ananthanarayanan + - Carolee Estelle + - Jesse T Jacob + - Jennie H Kwon + - Lisa L Maragakis + - Rekha Murthy + - Ann-Christine Nyquist + - Catherine Passaretti + - Lisa Saiman + - Erica S Shenoy + - '**Julia E Szymczak**' + - Thomas R Talbot + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2025-12-26' + link: https://doi.org/10.1017/ash.2025.10262 + type: paper + year: 2025 +- id: doi:10.1186/s13756-025-01686-4 + title: The influence of social relationships on clinician interpretation of performance + data in an outpatient antibiotic stewardship intervention. + authors: + - '**Julia E Szymczak**' + - Lindsay W Glassman + - Brandi M Muller + - Ebbing Lautenbach + - Keith W Hamilton + - Lauren Dutcher + - CDC Prevention Epicenters Program + publisher: Antimicrobial resistance and infection control + date: '2025-12-24' + link: https://doi.org/10.1186/s13756-025-01686-4 + type: paper + year: 2025 +- id: doi:10.1097/prs.0000000000012757 + title: 'Evaluating the Optimal Treatment Pathway for Volar Wrist Ganglia: A Cost-Minimization + Analysis.' + authors: + - Miranda J Rogers + - Hernan Roca + - Minkyoung Yoo + - Gretchen Maughan + - '**Richard E Nelson**' + - Andrew Federer + - Nikolas H Kazmers + publisher: Plastic and reconstructive surgery + date: '2025-12-22' + link: https://doi.org/10.1097/prs.0000000000012757 + type: paper + year: 2025 +- id: doi:10.1080/13696998.2025.2600217 + title: 'Cost-effectiveness of chimeric antigen receptor T-cell therapy for relapsed + or refractory large B-cell lymphoma: a systematic review and meta-analysis.' + authors: + - Loftus TJ + - Cho JY + - Meraz M + - Dhippayom T + - Bock AM + - Wagner CB + - Thavorn K + - '**Chaiyakunapruk N**' + publisher: Journal of medical economics + date: '2025-12-17' + link: https://doi.org/10.1080/13696998.2025.2600217 + type: paper + year: 2025 +- id: doi:10.1111/dom.70382 + title: 'Injection-site and dermatologic reactions associated with glucagon-like + peptide-1 receptor agonists: Insights from meta-analysis of randomised controlled + trials and real-world evidence.' + authors: + - Taj S + - Zuber M + - '**Rashid M**' + - Chhabra M + - Undela K + - Rawal S + - Villa Zapata L + publisher: Diabetes, obesity & metabolism + date: '2025-12-15' + link: https://doi.org/10.1111/dom.70382 + type: paper + year: 2025 +- id: doi:10.1093/ofid/ofaf690 + title: 'Impact of an Educational Leaflet About Asymptomatic Bacteriuria and Urinary + Tract Infection on Antibiotic Preferences Among US Adults ≥65 Years: An Online + Randomized Controlled Survey Experiment.' + authors: + - Alistair Thorpe + - Rachael A Lee + - '**Julia E Szymczak**' + - Madeline C Farrell + - Karen Howard + - Brandi M Muller + - Andrea T White + - Angela Fagerlin + - Valerie M Vaughn + publisher: Open forum infectious diseases + date: '2025-12-15' + link: https://doi.org/10.1093/ofid/ofaf690 + type: paper + year: 2025 +- id: doi:10.1111/dom.70322 + title: 'GLP-1 receptor agonists for treating obesity without diabetes: A systematic + review and meta-analysis of economic evaluations.' + authors: + - Dhippayom T + - Meraz M + - '**Lee H**' + - Hur C + - Inadomi JM + - Veettil SK + - Dunn JD + - '**Chaiyakunapruk N**' + publisher: Diabetes, obesity & metabolism + date: '2025-12-09' + link: https://doi.org/10.1111/dom.70322 + type: paper + year: 2025 +- id: doi:10.1146/annurev-ento-121423-013702 + title: 'Tick-Borne Diseases in Urban and Periurban Areas: A Blind Spot in Research + and Public Health.' + authors: + - Maria A Diuk-Wasser + - '**Pilar Fernandez**' + - Sophie O Vanwambeke + publisher: Annual review of entomology + date: '2025-12-02' + link: https://doi.org/10.1146/annurev-ento-121423-013702 + type: paper + year: 2025 +- id: doi:10.1002/ecs2.70470 + title: Land use and soil characteristics are associated with increased risk of treponeme‐associated + hoof disease in elk + authors: + - Steven N. Winter + - Glen A. Sargeant + - Margaret A. Wild + - '**Erin Clancey**' + - Kathryn P. Huyvaert + - Kyle Garrison + - Pilar Fernandez + publisher: Ecosphere + date: '2025-12-01' + link: https://doi.org/10.1002/ecs2.70470 + type: paper + year: 2025 +- id: doi:10.1109/tvcg.2025.3600957 + title: 'A Survey on Annotations in Information Visualization: Empirical Studies, + Applications and Challenges.' + authors: + - Rahman MD + - Doppalapudi B + - Quadri GJ + - '**Rosen P**' + publisher: IEEE transactions on visualization and computer graphics + date: '2025-12-01' + link: https://doi.org/10.1109/tvcg.2025.3600957 + type: paper + year: 2025 +- id: doi:10.1017/ash.2025.10231 + title: Infection prevention behaviors and perceptions of nurses in a medical intensive + care unit. + authors: + - Frank A Drews + - '**Jeanmarie Mayer**' + - Molly Leecaster + - Lindsay Visonvsky + - Tavis Huber + - '**Matthew H Samore**' + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2025-11-24' + link: https://doi.org/10.1017/ash.2025.10231 + type: paper + year: 2025 +- id: doi:10.1186/s12882-025-04628-9 + title: 'Evaluation of tenofovir alafenamide- versus tenofovir disoproxil fumarate-containing + regimens on renal outcomes: systematic literature review and meta-analysis.' + authors: + - Liang X + - Park KY + - '**Lee H**' + - Liu H + - Willis C + - Dhippayom T + - Rogers R + - Weinberg AR + - Green J + - Chi A + - Chaiyakunapruk N + publisher: BMC nephrology + date: '2025-11-21' + link: https://doi.org/10.1186/s12882-025-04628-9 + type: paper + year: 2025 +- id: doi:10.1017/ice.2025.10359 + title: Interventions to optimize duration of antibiotic therapy and encourage oral + transition for uncomplicated gram-negative blood stream infections across a health + system. + authors: + - Jared Olson + - Adam Hersh + - John Veillette + - C Dustin Waters + - Brandon J Webb + - Nick Tinker + - Stephanie May + - Michelle Matheu + - Nora Fino + - Rachel Foster + - Mary Hutton + - Erin Stahl + - Jena Rhodes + - Edward Stenehjem + - '**Andrew Pavia**' + - Payal Patel + - Allan Seibert + - Whitney Buckel + publisher: Infection control and hospital epidemiology + date: '2025-11-20' + link: https://doi.org/10.1017/ice.2025.10359 + type: paper + year: 2025 +- id: doi:10.1145/3719027.3760741 + title: 'Poster: Adversarial Habituation Attack: A Psychological Extension and Re-framing + of Boiling Frog Attack' + authors: + - Tashi Stirewalt + - '**Assefaw Gebremedhin**' + publisher: Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications + Security + date: '2025-11-19' + link: https://doi.org/10.1145/3719027.3760741 + type: paper + year: 2025 +- id: doi:10.1080/01490400.2023.2252434 + title: 'College Students’ Healthy Leisure: Latent Profile Analyses of Constraints + and Negotiation Strategies' + authors: + - Jennifer P. Agans + - Julie Stafford Son + - Sammie Powers + - Steven Hanna + - '**Elizabeth H. Weybright**' + publisher: Leisure Sciences + date: '2025-11-17' + link: https://doi.org/10.1080/01490400.2023.2252434 + type: paper + year: 2025 +- id: doi:10.1136/bmjdrc-2025-005188 + title: Hemoglobin A1c time-in-range, mortality, and diabetes complications in older + adults with diabetes. + authors: + - Paul R Conlin + - Julia C Prentice + - David C Mohr + - Libin Zhang + - Donglin Li + - Erin Pleasants + - '**Richard E Nelson**' + - Suma Vupputuri + - Gregory A Nichols + publisher: BMJ open diabetes research & care + date: '2025-11-04' + link: https://doi.org/10.1136/bmjdrc-2025-005188 + type: paper + year: 2025 +- id: doi:10.1145/3764921.3770149 + title: 'STAAR-FM: Scalable Terrain-Aware Adaptive Resolution Framework for Flow + Modeling' + authors: + - Deven Biehler + - Tashi Stirewalt + - Zayn Abou-Harb + - '**Assefaw Gebremedhin**' + publisher: Proceedings of the 8th ACM SIGSPATIAL International Workshop on Geospatial + Simulation + date: '2025-11-03' + link: https://doi.org/10.1145/3764921.3770149 + type: paper + year: 2025 +- id: doi:10.1001/jamanetworkopen.2025.43543 + title: Buprenorphine Treatment for Opioid Use Disorder in Non-Addiction Specialty + Settings. + authors: + - Sophia Huebler + - Audrey L Jones + - Hongwei Zhao + - '**Richard E Nelson**' + - Hildi J Hagedorn + - Eric J Hawkins + - Adam J Gordon + publisher: JAMA network open + date: '2025-11-03' + link: https://doi.org/10.1001/jamanetworkopen.2025.43543 + type: paper + year: 2025 +- id: doi:10.1542/hpeds.2025-008503 + title: Parent and Clinician Perceptions of Suctioning in Hospitalized Children With + Bronchiolitis. + authors: + - Robert J Willer + - Hadley M Brighton + - Polina Frolova Gregory + - Michelle Y Hamline + - Jimin Lee + - '**Julia E Szymczak**' + - Maya Wheeler + - Lauren M McDaniel + publisher: Hospital pediatrics + date: '2025-11-01' + link: https://doi.org/10.1542/hpeds.2025-008503 + type: paper + year: 2025 +- id: doi:10.1016/j.ctim.2025.103295 + title: 'Effectiveness and safety of turmeric for the treatment of COVID-19: An updated + systematic review and meta-analysis of randomized controlled trials.' + authors: + - Sawangjit R + - Sadoyu S + - Manosanthipaibul S + - Teerawattanapong N + - Puttarak P + - Wanaratna K + - Charoensup R + - Hiransai P + - Meetam T + - '**Chaiyakunapruk N**' + publisher: Complementary therapies in medicine + date: '2025-10-30' + link: https://doi.org/10.1016/j.ctim.2025.103295 + type: paper + year: 2025 +- id: doi:10.1371/journal.pone.0334405 + title: Caregiver psychological burden of RSV Hospitalization of children 2 years + of age and under. + authors: + - Lazarus Adua + - Krow Ampofo + - Evan Heller + - '**Per Gesteland**' + - Abbey Loveridge + - Katherine Werdan + - Kaleb Miller + - Alex Platt-Koch + - Madelyn Ruggieri + - Lyn Finelli + - Yoonyoung Choi + publisher: PloS one + date: '2025-10-30' + link: https://doi.org/10.1371/journal.pone.0334405 + type: paper + year: 2025 +- id: doi:10.1017/ice.2025.10314 + title: Validation of an electronic algorithm to identify appropriate antibiotic + use for community-acquired pneumonia in hospitalized children. + authors: + - Kathleen Chiotos + - Lauren Dutcher + - Robert Grundmeier + - Didien Meyahnwi + - Ebbing Lautenbach - Melinda Neuhauser - Lauri Hicks - - McKenna Nevers - - Matthew Goetz - - Nai-Chung Chang - - Arjun Srinivasan - - Makoto Jones - publisher: Infection Control & Hospital Epidemiology - date: '2020-10-01' - link: https://doi.org/hbz8b3 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1001/JAMAINTERNMED.2019.7495 - title: Empirical Anti-MRSA vs Standard Antibiotic Therapy and Risk of 30-Day Mortality - in Patients Hospitalized for Pneumonia + - Keith Hamilton + - '**Julia E Szymczak**' + - Brandi Muller + - Leigh Cressman + - Anne Jaskowiak-Barr + - Jeffrey Gerber + publisher: Infection control and hospital epidemiology + date: '2025-10-28' + link: https://doi.org/10.1017/ice.2025.10314 + type: paper + year: 2025 +- id: doi:10.1016/j.ajic.2025.10.013 + title: Impact of local COVID-19 incidence on health care personnel risk perception + and social activity. authors: - - Barbara Ellen Jones - - Jian Ying + - Holly Shoemaker + - Haojia Li + - Yue Zhang + - '**Jeanmarie Mayer**' - Vanessa Stevens + - Angela Fagerlin + - Michael Rubin - Candace Haroldsen - - Tao He - - McKenna Nevers - - Matthew A. Christensen - - Richard E. Nelson - - Gregory J. Stoddard - - Brian C. Sauer - - Peter M. Yarbrough - - Makoto M. Jones + - Morgan M Millar + - '**Andrew T Pavia**' + - '**Per H Gesteland**' + - Lindsay T Keegan + - Matthew Samore + publisher: American journal of infection control + date: '2025-10-25' + link: https://doi.org/10.1016/j.ajic.2025.10.013 + type: paper + year: 2025 +- id: doi:10.1016/j.jpedsurg.2025.162763 + title: Charges associated with preventable trauma transfers after application of + pediatric brain injury guidelines (kBIG). + authors: + - Anastasia M Kahan + - Annika B Kay + - Sommer L Glasgow + - Hsuan-Yu Wan + - Sidney Norton + - '**Richard E Nelson**' + - Vijay M Ravindra + - Robert A Swendiman + - Zachary J Kastenberg + - Katie W Russell + publisher: Journal of pediatric surgery + date: '2025-10-25' + link: https://doi.org/10.1016/j.jpedsurg.2025.162763 + type: paper + year: 2025 +- id: doi:10.1097/psy.0000000000001446 + title: Testing the Daily Bidirectional Relationships Between Stress and Sleep Using + Bivariate Multilevel Autoregressive Modeling. + authors: + - Nicholls C + - '**Shoaf K**' + - Halliday T + - Prather AA + - Baucom BRW + - Baron KG + publisher: Biopsychosocial science and medicine + date: '2025-10-20' + link: https://doi.org/10.1097/psy.0000000000001446 + type: paper + year: 2025 +- id: doi:10.1093/infdis/jiaf152 + title: 'Improving Access to Influenza Testing and Treatment: Is It Time for Over-the-counter + Oseltamivir?' + authors: + - Kyueun Lee + - '**Andrew T Pavia**' + - Janet A Englund + publisher: The Journal of infectious diseases + date: '2025-10-17' + link: https://doi.org/10.1093/infdis/jiaf152 + type: paper + year: 2025 +- id: doi:10.1371/journal.pcbi.1013577 + title: Transmission thresholds for the spread of infections in healthcare facilities. + authors: + - '**Damon J A Toth**' + - '**Karim Khader**' + - Christopher Mitchell + - '**Matthew H Samore**' + publisher: PLoS computational biology + date: '2025-10-15' + link: https://doi.org/10.1371/journal.pcbi.1013577 + type: paper + year: 2025 + group: featured + image: images/plos.png +- id: doi:10.1039/d5na00416k + title: A novel approach for classifying monoamine neurotransmitters by applying + machine learning on UV plasmonic-engineered auto fluorescence time decay series + (AFTDS). + authors: + - Mohammadi M + - Najafzadehkhoei S + - '**Vega Yon GG**' + - Wang Y + publisher: Nanoscale advances + date: '2025-10-14' + link: https://doi.org/10.1039/d5na00416k + type: paper + year: 2025 +- id: doi:10.1080/13696998.2025.2565902 + title: 'The incremental net monetary benefit of higher-valent pneumococcal conjugate + vaccines for adults: a systematic review and meta-analysis of economic evaluations.' + authors: + - '**Lee H**' + - Cho JY + - Vietri J + - Dawson E + - '**Chaiyakunapruk N**' + publisher: Journal of medical economics + date: '2025-10-10' + link: https://doi.org/10.1080/13696998.2025.2565902 + type: paper + year: 2025 +- id: doi:10.1177/14738716251360339 + title: 'Visualizing information on smartwatch faces: A review and design space' + authors: + - Alaul Islam + - '**Tingying He**' + - Anastasia Bezerianos + - Tanja Blascheck + - Bongshin Lee + - Petra Isenberg + publisher: Information Visualization + date: '2025-10-07' + link: https://doi.org/10.1177/14738716251360339 + type: paper + year: 2025 +- id: doi:10.1017/ice.2025.10253 + title: 'Factors associated with healthcare personnel glove or gown contamination + with MRSA: a cohort study of VA hospitals in 5 states.' + authors: + - Lyndsay M O'Hara + - Lisa Pineles + - Michelle Newman + - Mary Bahr-Robertson + - Gio J Baracco - Matthew Bidwell Goetz - - Tom Greene - - Matthew H. Samore - publisher: JAMA Internal Medicine - date: '2020-04-01' - link: https://doi.org/ghzt8h - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/OFID/OFZ554 - title: 'Inpatient Management of Uncomplicated Skin and Soft Tissue Infections in - 34 Veterans Affairs Medical Centers: A Medication Use Evaluation' + - Kevin S Ikuta + - Christopher J Crnich + - Suzanne F Bradley + - Kathleen A Linder + - '**Michael A Rubin**' + - '**Karim Khader**' + - '**Richard E Nelson**' + - J Kristie Johnson + - Eli N Perencevich + - Martin E Evans + - Anthony D Harris + publisher: Infection control and hospital epidemiology + date: '2025-10-07' + link: https://doi.org/10.1017/ice.2025.10253 + type: paper + year: 2025 +- id: doi:10.1093/jpids/piaf089 + title: Off-target Impact of Clinician Feedback Reports on Antibiotic Use in Children + With Medical Complexity Hospitalized With Community-Acquired Pneumonia. authors: - - Jesse D Sutton - - Ronald Carico - - Muriel Burk - - Makoto M Jones - - XiangMing Wei + - Kathleen Chiotos + - Lauren Dutcher + - Robert W Grundmeier + - '**Julia E Szymczak**' + - Ebbing Lautenbach - Melinda M Neuhauser - - Matthew Bidwell Goetz - - Kelly L Echevarria - - Emily S Spivak - - Francesca E Cunningham - - Tiffany Goolsby - - Lucy Witt - - Joseph Hong - - Patrick Landayan - - Katelyn Shatz - - Benjamin Pontefract - - Kaysie Murdock - - Jaime Gallegos-Salazar - - Judith Strymish - - Mei Chang - - Henry Poon - - Kirsten Vest - - Nicholas Tinsley - - Gregory Bockenstedt - - Darshan Patel - - John Message - - Gordon Ang - - Archana Banerjee - - Sarah Fry - - Michael Rose - - Jason Hiett - - Victoria Tate - - Ann Fisher - - Brian Kotansky - - Van Vu - - Sorabh Dhar - - Ryan Kuhn - - Sandra Willis - - Rachel Britt - - Mary Townsend - - Erica Little - - Lisa Williams - - Elizabeth Ficek - - Renae Tell - - Xuxuan Liu - - John Pasciak - - Ruth Iliuta - - Jessica Bennett - - Victoria Germinario - - Elizabeth Jacobs - - Justin Spivey - - Marty Vannoy - - Pamela Foral - - Christine Feller - - Hien Nguyen - - Shu Lu - - Tim Burns - - Paris Khan - - Marcus Kouma - - Deanna Buehrle - - Nicholas Ruzzi - - Kimberly MacKay - - Lisa Tran - - Jennifer Emberger - - Khine Sann - - Daniel Tassone - - Emily Spivak - - Jesse Sutton - - Sean Chow - - Ariel Ma - - Edmarielis Gonzalez-Gonzalez - - Hector Cintron - - Andrea Aylward - - K Taylor Daniel - - Jenna Welu - - Cameron Pickard - - Chelsea Sanchez - - Ashfaq Shafiq - - Danielle Skouby - - "Jill O\u2019Donnell" - - Michael Surdy - publisher: Open Forum Infectious Diseases - date: '2020-01-01' - link: https://doi.org/hbz8b4 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2020.897 - title: Laboratory Testing, Diagnostic Coding, and Treatment for Electronic Identification - of Clostridioides difficile Infection + - Lauri A Hicks + - Keith W Hamilton + - Yun Li + - Brandi M Muller + - Didien Meyahnwi + - Morgan Congdon + - Emily Kane + - Jessica Hart + - Levon Utidjian + - Leigh Cressman + - Anne Jaskowiak-Barr + - Jeffrey S Gerber + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2025-10-02' + link: https://doi.org/10.1093/jpids/piaf089 + type: paper + year: 2025 +- id: doi:10.1001/jamainternmed.2025.4150 + title: 'Remote Bone Health Service for Osteoporosis Screening in High-Risk Men: + A Cluster Randomized Clinical Trial.' authors: - - Vanessa Stevens - - Andrea Benin - - Raymund Dantes - - Karim Khader - - Sean Nugent - - Julia Lewis - - Terrence Adam - - Rui Zhang - - Steven Fu - - Makoto Jones - - Daniel Pollock - - Steven Waisbren - publisher: Infection Control & Hospital Epidemiology + - Cathleen Colón-Emeric + - Richard Lee + - Kenneth W Lyles + - Leah L Zullig + - Richard Sloane + - Carl F Pieper + - '**Richard E Nelson**' + - Robert A Adler + publisher: JAMA internal medicine + date: '2025-10-01' + link: https://doi.org/10.1001/jamainternmed.2025.4150 + type: paper + year: 2025 +- id: doi:10.1001/jamanetworkopen.2025.36600 + title: Health Care Costs Associated With Norovirus at the Veterans Health Administration. + authors: + - Jordan E Cates + - '**Richard E Nelson**' + - Ying Suo + - Umesh D Parashar + - Cynthia A Lucero-Obusan + - Mark Holodniy + - Sara A Mirza + publisher: JAMA network open + date: '2025-10-01' + link: https://doi.org/10.1001/jamanetworkopen.2025.36600 + type: paper + year: 2025 +- id: doi:10.1109/tvcg.2025.3541571 + title: 'Bridging Network Science and Vision Science: Mapping Perceptual Mechanisms + to Network Visualization Tasks.' + authors: + - Bae SS + - Cave K + - Gorg C + - '**Rosen P**' + - Szafir DA + - Bearfield CX + publisher: IEEE transactions on visualization and computer graphics + date: '2025-10-01' + link: https://doi.org/10.1109/tvcg.2025.3541571 + type: paper + year: 2025 +- id: doi:10.1177/11786329251375179 + title: Identifying Prevention Targets for Homelessness Among Recently Discharged + U.S. Veterans Across Systems. + authors: + - Eric B Elbogen + - Mary Jo Pugh + - Megan Amuan + - Shannon M Blakey + - Robert C Graziano + - '**Richard E Nelson**' + - Audrey L Jones + - Jack Tsai + publisher: Health services insights + date: '2025-09-28' + link: https://doi.org/10.1177/11786329251375179 + type: paper + year: 2025 +- id: doi:10.1007/s40615-025-02638-9 + title: Food Insecurity and Chronic Disease Among Native Hawaiians and Pacific Islanders + on the Continent During COVID-19. + authors: + - Barhoum MAT + - Rantala M + - Lindell M + - McElfish P + - '**Lofgren E**' + - Dillard D + - Morgan ER + publisher: Journal of racial and ethnic health disparities + date: '2025-09-27' + link: https://doi.org/10.1007/s40615-025-02638-9 + type: paper + year: 2025 +- id: doi:10.1002/pmf2.70117 + title: 'Standardization of labor induction management: A mixed-methods evaluation + of the clinician perspective.' + authors: + - Jessica K Wu + - Rinad S Beidas + - '**Julia E Szymczak**' + - Sindhu K Srinivas + - Samuel Parry + - Lisa D Levine + - Rebecca F Hamm + publisher: Pregnancy (Hoboken, N.J.) + date: '2025-09-26' + link: https://doi.org/10.1002/pmf2.70117 + type: paper + year: 2025 +- id: doi:10.3389/frhs.2025.1566454 + title: 'Standard vs. enhanced implementation strategies to increase adoption of + a multidrug-resistant organism alert tool: a cluster randomized trial.' + authors: + - Ray C + - Goedken C + - Hughes AM + - Wilson GM + - Hicks NR + - Fitzpatrick MA + - '**Jones MM**' + - Pfeiffer C + - Klutts JS + - Evans ME + - Suda KJ + - Evans CT + publisher: Frontiers in health services + date: '2025-09-18' + link: https://doi.org/10.3389/frhs.2025.1566454 + type: paper + year: 2025 +- id: doi:10.1101/2025.09.10.675434 + title: First Sin Nombre virus (Orthohantavirus sinnombreense) genome sequences from + the Northwestern United States + authors: + - Rickard G + - Rivero R + - Grady AC + - Horton JA + - Lauritsen C + - Fawcett S + - Goodfellow S + - Oltean HN + - Fernandez MP + - '**Seifert SN**' + publisher: bioRxiv + date: '2025-09-16' + link: https://doi.org/10.1101/2025.09.10.675434 + type: preprint + year: 2025 +- id: doi:10.1136/bmjopen-2024-094925 + title: 'Developing an approach to enhance recruitment for a cluster-randomised implementation + trial: leveraging deliberative participation and credible messengers.' + authors: + - Valerie M Vaughn + - Jennifer Horowitz + - Tejal Gandhi + - Robert Allan Neetz + - Lindsay Petty + - Adam Hersh + - Peter Lindenauer + - Steven J Bernstein + - Scott A Flanders + - James D Harrison + - Justin D Smith + - Andrea T White + - '**Julia E Szymczak**' + publisher: BMJ open + date: '2025-09-16' + link: https://doi.org/10.1136/bmjopen-2024-094925 + type: paper + year: 2025 +- id: doi:10.1101/2025.09.11.675678 + title: Machine Learning Enables Viral Genome-Agnostic Classification of RNA Virus + Infections from Host Transcriptomes + authors: + - Kaza B + - Gamble A + - '**Seifert SN**' + - Poisot T + publisher: bioRxiv + date: '2025-09-11' + link: https://doi.org/10.1101/2025.09.11.675678 + type: preprint + year: 2025 +- id: doi:10.48550/arxiv.2509.07013 + title: 'Machine Generalize Learning in Agent-Based Models: Going Beyond Surrogate + Models for Calibration in ABMs' + authors: + - Sima Najafzadehkhoei + - '**George Vega Yon**' + - Derek S. Meyer + - Bernardo Modenesi + publisher: arXiv + date: '2025-09-06' + link: https://arxiv.org/abs/2509.07013 + type: preprint + year: 2025 +- id: doi:10.1007/s10916-025-02246-4 + title: How Well Do ChatGPT and Claude Perform in Study Selection for Systematic + Review in Obstetrics. + authors: + - Insuk S + - Boonpattharatthiti K + - Booncharoen C + - Chaipitak P + - '**Rashid M**' + - Veettil SK + - Lai NM + - Chaiyakunapruk N + - Dhippayom T + publisher: Journal of medical systems + date: '2025-09-04' + link: https://doi.org/10.1007/s10916-025-02246-4 + type: paper + year: 2025 +- id: doi:10.1001/jamanetworkopen.2025.31000 + title: 'Parent and Clinician Perspectives on Diagnostic Testing for Children With + Diarrhea: A Qualitative Study.' + authors: + - Anna Jones + - Aparna Mangadu + - Sarah Dallas + - Olivia Hanson + - Katherine Arn + - '**Per Gesteland**' + - '**Julia E Szymczak**' + - '**Andrew T Pavia**' + - Daniel T Leung + - Melissa H Watt + publisher: JAMA network open + date: '2025-09-02' + link: https://doi.org/10.1001/jamanetworkopen.2025.31000 + type: paper + year: 2025 +- id: doi:10.1080/21645515.2025.2545637 + title: Analysis of the economically justifiable price of nirsevimab to prevent respiratory + syncytial virus infection in Korea. + authors: + - Han HJ + - Jang S + - Dahye R + - '**Lee H**' + - Lee J + - Bae EJ + - Soudani S + - Suh HS + publisher: Human vaccines & immunotherapeutics + date: '2025-08-28' + link: https://doi.org/10.1080/21645515.2025.2545637 + type: paper + year: 2025 +- id: doi:10.1016/j.ajic.2025.08.024 + title: A qualitative study of health care professionals' attitudes and practices + of mobile equipment cleaning. + authors: + - Egenia Dorsan + - Frank A Drews + - Lindsay D Visnovsky + - Molly Leecaster + - Styn M Jamu + - Kristina Stratford + - Tavis Huber + - Hannah Higgs + - '**Matthew H Samore**' + publisher: American journal of infection control + date: '2025-08-28' + link: https://doi.org/10.1016/j.ajic.2025.08.024 + type: paper + year: 2025 +- id: doi:10.1136/bmjopen-2025-102158 + title: 'Machine-learning-based artificial intelligence tools for the diagnosis of + tropical fevers: a systematic review and meta-analysis protocol of diagnostic + test accuracy.' + authors: + - Chitrapady S + - Rajendran R + - K H + - M U T + - '**Rashid M**' + - Poojari PG + - K V + - Varma M + - Devi V + - Acharya D + - Khan S + - Thunga G + publisher: BMJ open + date: '2025-08-25' + link: https://doi.org/10.1136/bmjopen-2025-102158 + type: paper + year: 2025 +- id: doi:10.1016/j.jval.2025.07.001 + title: 'Role of Generative Artificial Intelligence in Assisting Systematic Review + Process in Health Research: A Systematic Review.' + authors: + - '**Rashid M**' + - Yi CS + - Sathapanasiri T + - Udayachalerm S + - Boonpattharatthiti K + - Insuk S + - Veettil SK + - Lai NM + - Chaiyakunapruk N + - Dhippayom T + - Generative Artificial Intelligence for Navigating Systematic Reviews working group + publisher: 'Value in health : the journal of the International Society for Pharmacoeconomics + and Outcomes Research' + date: '2025-08-22' + link: https://doi.org/10.1016/j.jval.2025.07.001 + type: paper + year: 2025 +- id: doi:10.1002/ajcp.70001 + title: '"I never realized how hard recovery is." A quasi-experimental evaluation + of a youth participatory action research project for opioid prevention.' + authors: + - '**Weybright EH**' + - Hampilos K + - White AJ + - Grinstead C + - Fees J + - Greer M + - Doering EL + - Graham LM + publisher: American journal of community psychology + date: '2025-08-22' + link: https://doi.org/10.1002/ajcp.70001 + type: paper + year: 2025 +- id: doi:10.3390/ijerph22081301 + title: 'Assessing Public Health Capacity for Infectious Disease Modeling: A Qualitative + Study of State and Local Agencies.' + authors: + - '**Skyler J Crouch**' + - Katie S Allen + - '**Delaney Thornton**' + - Joel Hartsell + - '**Elizabeth H Weybright**' + - '**Julia E Szymczak**' + - '**Kimberley I Shoaf**' + publisher: International journal of environmental research and public health + date: '2025-08-20' + link: https://doi.org/10.3390/ijerph22081301 + type: paper + year: 2025 + group: featured + image: images/ijerph.png +- id: doi:10.1177/29767342251358099 + title: 'Building a Network for Community-Engaged Research Related to Substance Use + Disorder Care Transitions: A Commentary With Protocol.' + authors: + - Michael A Incze + - '**Julia E Szymczak**' + - Evan Done + - Laura Stolebarger + - Natasha England + - Elizabeth Marshall + - Shilpa Raju + - Marcie Gray + - Marnie Saunders + - Claire E Ciarkowski + - James C Willey + - Alycia A Bristol + - Ulises Amaton + - Valerie M Vaughn + publisher: Substance use & addiction journal + date: '2025-08-12' + link: https://doi.org/10.1177/29767342251358099 + type: paper + year: 2025 +- id: doi:10.1109/tvcg.2025.3633909 + title: 'Reframing Pattern: A Comprehensive Approach to a Composite Visual Variable.' + authors: + - '**He T**' + - Dykes J + - Isenberg P + - Isenberg T + publisher: IEEE transactions on visualization and computer graphics + date: '2025-08-11' + link: https://doi.org/10.1109/tvcg.2025.3633909 + type: paper + year: 2025 +- id: doi:10.1109/tvcg.2025.3634821 + title: 'Here''s what you need to know about my data: Exploring Expert Knowledge''s + Role in Data Analysis.' + authors: + - Lin H + - Lisnic M + - Akbaba D + - Meyer M + - '**Lex A**' + publisher: IEEE transactions on visualization and computer graphics + date: '2025-08-07' + link: https://doi.org/10.1109/tvcg.2025.3634821 + type: paper + year: 2025 +- id: doi:10.1109/tvcg.2025.3633874 + title: Using Tactile Charts to Support Comprehension and Learning of Complex Visualizations + for Blind and Low-Vision Individuals. + authors: + - '**He T**' + - McCracken M + - Hajas D + - Creem-Regehr S + - '**Lex A**' + publisher: IEEE transactions on visualization and computer graphics + date: '2025-08-01' + link: https://doi.org/10.1109/tvcg.2025.3633874 + type: paper + year: 2025 +- id: doi:10.1111/csp2.70088 + title: Changing grizzly bear space use and functional connectivity in response to + human disturbance in the southern Canadian Rocky Mountains + authors: + - Eric C. Palm + - Clayton D. Apps + - Tal Avgar + - Melanie Dickie + - Bruce N. McLellan + - Joseph M. Northrup + - Michael A. Sawaya + - Julie W. Turner + - Jesse Whittington + - '**Erin L. Landguth**' + - Katherine A. Zeller + - Clayton T. Lamb + publisher: Conservation Science and Practice + date: '2025-08-01' + link: https://doi.org/10.1111/csp2.70088 + type: paper + year: 2025 +- id: doi:10.1016/j.virol.2025.110631 + title: 'Quantitative viral dynamics: Methods for parameter estimation.' + authors: + - Tower A + - Owens K + - Esmaeili S + - Schiffer JT + - Reeves DB + - '**Schwartz EJ**' + publisher: Virology + date: '2025-07-24' + link: https://doi.org/10.1016/j.virol.2025.110631 + type: paper + year: 2025 +- id: doi:10.1017/ash.2025.10067 + title: The impact of an intervention to increase follow-up blood cultures for patients + with Staphylococcus aureus bacteriuria. + authors: + - Jared Olson + - Vincent Anella + - Brandon J Webb + - '**Andrew T Pavia**' + - Emily A Thorell + - Adam L Hersh + - Dustin Waters + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2025-07-17' + link: https://doi.org/10.1017/ash.2025.10067 + type: paper + year: 2025 +- id: doi:10.1101/2025.07.09.663867 + title: 'TATAT: a containerized software for generating annotated coding transcriptomes + from raw RNA-seq data' + authors: + - Brown AJ + - '**Seifert SN**' + publisher: bioRxiv + date: '2025-07-14' + link: https://doi.org/10.1101/2025.07.09.663867 + type: preprint + year: 2025 +- id: doi:10.3390/healthcare13141638 + title: 'Impact of COVID-19 on Incident Depression and Anxiety: A Population-Based + Observational Study Using Statewide Claims Data.' + authors: + - Kim J + - '**Duong KNC**' + - Duru EE + - Weir R + - Manotas K + - Kleinschmit K + - Fischer A + - Weir P + - Wilson FA + publisher: Healthcare (Basel, Switzerland) + date: '2025-07-08' + link: https://doi.org/10.3390/healthcare13141638 + type: paper + year: 2025 +- id: doi:10.1007/s00246-025-03932-3 + title: 'Fontan Patients with a Systemic Left Ventricle Have Greater Exercise Capacity + than those with a Systemic Right Ventricle: A Systematic Review and Meta-Analysis.' + authors: + - Anderson-Bell DM + - Hardison EH + - '**Rashid M**' + - Hammond BH + - Hegewald M + - Rapp TE + - Ploutz M + - Williams RV + - Ziebell D + - Chaiyakunapruk N + publisher: Pediatric cardiology + date: '2025-07-05' + link: https://doi.org/10.1007/s00246-025-03932-3 + type: paper + year: 2025 +- id: doi:10.1001/jamanetworkopen.2025.22779 + title: Optimizing Timing for Respiratory Syncytial Virus Prevention Interventions + for Infants. + authors: + - '**Nguyen D**' + - '**Lee H**' + - '**Pavia AT**' + - '**Nelson RE**' + - Samore M + - Chaiyakunapruk N + publisher: JAMA network open + date: '2025-07-01' + link: https://doi.org/10.1001/jamanetworkopen.2025.22779 + type: paper + year: 2025 + group: featured + image: images/RSV.png +- id: doi:10.1001/jamanetworkopen.2025.22740 + title: 'Microbiota Transplantation Among Patients Receiving Long-Term Care: The + Sentinel REACT Nonrandomized Clinical Trial.' + authors: + - Michael H Woodworth + - Ahmed Babiker + - Radhika Prakash-Asrani + - C Christina Mehta + - Danielle Barrios Steed + - Amanda Ashley + - Dylan Koundakjian + - Adi Acharya + - Lori Grooms + - Chris W Bower + - Deepti R Suchindran + - Twinkle Trehan + - Alison Laufer Halpin + - Maroya Spalding Walters + - Sujan C Reddy + - '**Matthew H Samore**' + - Mary-Claire Roghmann + - Mary K Hayden + - Julia Van Riel + - Eileen M Burd + - Sarah Lohsen + - Sarah W Satola + - Scott K Fridkin + publisher: JAMA network open + date: '2025-07-01' + link: https://doi.org/10.1001/jamanetworkopen.2025.22740 + type: paper + year: 2025 +- id: doi:10.1002/jeo2.70420 + title: 'An evaluation of a low-cost platelet-rich plasma for osteoarthritis of the + knee: A pilot study.' + authors: + - Cushman DM + - Johnson LA + - Burnham T + - '**Nelson R**' + - Egbert J + - Burnham R + publisher: Journal of experimental orthopaedics + date: '2025-07-01' + link: https://doi.org/10.1002/jeo2.70420 + type: paper + year: 2025 +- id: doi:10.1145/3699511 + title: 'HierGP: Hierarchical Grid Partitioning for Scalable Geospatial Data Analytics' + authors: + - Olufunso Oje + - Tashi Stirewalt + - Ofer Amram + - Perry Hystad + - Solmaz Amiri + - '**Assefaw Gebremedhin**' + publisher: ACM Transactions on Spatial Algorithms and Systems + date: '2025-06-30' + link: https://doi.org/10.1145/3699511 + type: paper + year: 2025 +- id: doi:10.1055/a-2643-7667 + title: 'Performance of three major techniques for endoscopic submucosal dissection: + a systematic review and network meta-analysis.' + authors: + - Ramai D + - Qatomah A + - Chun M + - Beran A + - Danpanichkul P + - '**Rashid M**' + - Sathapanasiri T + - Chaiyakunapruk N + - Previtera M + - Spadaccini M + - Jacques J + - Aihara H + publisher: Endoscopy + date: '2025-06-25' + link: https://doi.org/10.1055/a-2643-7667 + type: paper + year: 2025 +- id: doi:10.1038/s41597-025-05332-x + title: A minimum data standard for wildlife disease research and surveillance. + authors: + - Schwantes CJ + - Sánchez CA + - Stevens T + - Zimmerman R + - Albery G + - Becker DJ + - Brookson CB + - Kading RC + - Keiser CN + - Khandelwal S + - Kramer-Schadt S + - Krut-Landau R + - McKee C + - Montecino-Latorre D + - O'Donoghue Z + - Olson SH + - O'Shea M + - Poisot T + - Robertson H + - Ryan SJ + - '**Seifert SN**' + - Simons D + - Vicente-Santos A + - Wood CL + - Graeden E + - Carlson CJ + publisher: Scientific data + date: '2025-06-21' + link: https://doi.org/10.1038/s41597-025-05332-x + type: paper + year: 2025 +- id: doi:10.1017/ash.2025.65 + title: 'Assessing hospital antibiotic stewardship program (ASP) implementation: + validation of an implementation science-informed survey.' + authors: + - Jorie Michaela Butler + - Ellen Childs + - Tamar Barlam + - Mari-Lynn Drainoni + - Caitlin Reardon + - Yue Zhang + - Laura Damschroder + - Peter Taber + - Karl Madaras-Kelly + - Matthew Goetz + - Shana Burrowes + - Eddie Stenehjem + - Jincheng Shen + - Chong Zhang + - Angela Presson + - '**Matthew Howard Samore**' + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2025-06-20' + link: https://doi.org/10.1017/ash.2025.65 + type: paper + year: 2025 +- id: doi:10.1080/14740338.2025.2521358 + title: 'Risk of musculoskeletal disorders associated with Bruton''s tyrosine kinase + inhibitors: a disproportionality analysis of FAERS database and meta-analysis.' + authors: + - Zuber M + - Thomas C + - Taj S + - '**Rashid M**' + - Undela K + - Ramanarayanan J + - Hernandez-Ilizaliturri FJ + - Villa Zapata L + publisher: Expert opinion on drug safety + date: '2025-06-18' + link: https://doi.org/10.1080/14740338.2025.2521358 + type: paper + year: 2025 +- id: doi:10.1161/circoutcomes.124.011839 + title: Cost-Effectiveness of Gamification, Financial Incentives, or Both to Increase + Physical Activity Among Patients With Elevated Risk for Cardiovascular Disease. + authors: + - Louise B Russell + - Kevin G M Volpp + - Mitesh S Patel + - Neel P Chokshi + - Samantha Coratti + - David Farraday + - Laurie Norton + - Charles Rareshide + - Jingsan Zhu + - Tamar Klaiman + - '**Julia E Szymczak**' + - Dylan S Small + - Alexander C Fanaroff + publisher: Circulation. Cardiovascular quality and outcomes + date: '2025-06-17' + link: https://doi.org/10.1161/circoutcomes.124.011839 + type: paper + year: 2025 +- id: doi:10.1080/13561820.2025.2507968 + title: Changes in healthcare utilization and costs following enrollment in an interprofessional + primary care clinic designed to address clinical and social vulnerabilities. + authors: + - Kelley AT + - Yoo M + - Suo Y + - '**Nelson RE**' + - Gordon AJ + - Jones AL + publisher: Journal of interprofessional care + date: '2025-06-17' + link: https://doi.org/10.1080/13561820.2025.2507968 + type: paper + year: 2025 +- id: doi:10.3389/fpubh.2025.1579202 + title: 'Impact of lifting school mask mandates on community SARS-CoV-2 cases, hospitalizations, + and deaths: a retrospective observational study.' + authors: + - Zeynep Ertem + - Anseh Danesharasteh + - Sonia T Anand + - Nicholas J Jackson + - '**Richard E Nelson**' + - Elissa M Schechter-Perkins + - Lloyd Fisher + - Shira Doron + - Westyn Branch-Elliman + publisher: Frontiers in public health + date: '2025-06-12' + link: https://doi.org/10.3389/fpubh.2025.1579202 + type: paper + year: 2025 +- id: doi:10.1093/ofid/ofaf346 + title: Influence of Access to Care on Decision-making About Antibiotic Duration + at Discharge. + authors: + - Guinn E Dunn + - Andrea T White + - Daniel L Giesler + - Daraoun Mashrah + - Adamo Brancaccio + - '**Julia E Szymczak**' + - Jennifer K Horowitz + - Robert A Neetz + - Valerie M Vaughn + publisher: Open forum infectious diseases + date: '2025-06-11' + link: https://doi.org/10.1093/ofid/ofaf346 + type: paper + year: 2025 +- id: pmid:40502216 + title: Studying Veteran food insecurity longitudinally using electronic health record + data and natural language processing. + authors: + - Alec B Chapman + - Talia Panadero + - Rachel Dalrymple + - Alicia Cohen + - Nipa Kamdar + - Farhana Pethani + - Andrea Kalvesmaki + - '**Richard E Nelson**' + - Jorie Butler + publisher: AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits + on Translational Science + date: '2025-06-10' + link: https://pubmed.ncbi.nlm.nih.gov/40502216/ + type: paper + year: 2025 +- id: doi:10.1002/acr.25554 + title: 'Gastrointestinal Perforation as a Safety Concern Among Patients With Rheumatoid + Arthritis Receiving JAK Inhibitor Therapy: A Systematic Review and Network Meta-Analysis.' + authors: + - Sathapanasiri T + - Meraz M + - Mokri H + - K Veettil S + - Wijarnpreecha K + - Schlesinger N + - Kavanaugh A + - '**Chaiyakunapruk N**' + publisher: Arthritis care & research + date: '2025-06-02' + link: https://doi.org/10.1002/acr.25554 + type: paper + year: 2025 +- id: doi:10.1109/jproc.2025.3599840 + title: 'Deep Reinforcement Learning for Distribution System Operations: A Tutorial + and Survey' + authors: + - Daniel Glover + - Gayathri Krishnamoorthy + - Hongda Ren + - Anamika Dubey + - '**Assefaw Gebremedhin**' + publisher: Proceedings of the IEEE + date: '2025-06-01' + link: https://doi.org/10.1109/JPROC.2025.3599840 + type: paper + year: 2025 +- id: doi:10.1111/cgf.70102 + title: Accessible Text Descriptions for UpSet Plots + authors: + - A. McNutt + - M. K. McCracken + - I. J. Eliza + - D. Hajas + - '**J. Wagoner**' + - N. Lanza + - J. Wilburn + - S. Creem‐Regehr + - '**A. Lex**' + publisher: Computer Graphics Forum + date: '2025-06-01' + link: https://doi.org/10.1111/cgf.70102 + type: paper + year: 2025 +- id: doi:10.1111/hiv.70050 + title: 'Comparison of treatment-emergent resistance-associated mutations and discontinuation + due to adverse events among integrase strand transfer inhibitor-based single-tablet + regimens and cabotegravir + rilpivirine for the treatment of virologically suppressed + people with HIV: A systematic literature review and network meta-analysis.' + authors: + - Rashid I + - Unger NR + - Willis C + - Dhippayom T + - Ramgopal M + - Sherman EM + - Yared N + - Safran R + - Swiatlo E + - Weinberg AR + - Navadeh S + - Schmutz HW + - '**Chaiyakunapruk N**' + publisher: HIV medicine + date: '2025-05-27' + link: https://doi.org/10.1111/hiv.70050 + type: paper + year: 2025 +- id: doi:10.1186/s12889-025-22717-0 + title: 'What motivates participants: a qualitative analysis of gamification and + financial incentives to increase physical activity.' + authors: + - Eric Ryu + - David Farraday + - Alexander C Fanaroff + - Samantha Coratti + - Neel P Chokshi + - Jingsan Zhu + - '**Julia E Szymczak**' + - Louise B Russell + - Laurie Norton + - Dylan Small + - Kevin G Volpp + - Tamar Klaiman + publisher: BMC public health + date: '2025-05-16' + link: https://doi.org/10.1186/s12889-025-22717-0 + type: paper + year: 2025 +- id: doi:10.1093/jpids/piaf036 + title: Readmission Following Respiratory Syncytial Virus Hospitalization among Children + <5 Years of Age. + authors: + - Yoonyoung Choi + - Evan Heller + - Linda Amoafo + - Yue Zhang + - Kaleb Miller + - Abbey Loveridge + - Madelyn Ruggieri + - '**Per Gesteland**' + - Krow Ampofo + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2025-05-13' + link: https://doi.org/10.1093/jpids/piaf036 + type: paper + year: 2025 +- id: doi:10.1007/s40620-025-02297-3 + title: Development, validation, and reliability of a questionnaire to assess risk-factors + of chronic kidney disease of unknown etiology. + authors: + - Rajan AK + - Khader NA + - Poojari PG + - Attur RP + - Kamath VG + - Kamath SU + - Nagaraju SP + - Mallayasamy SR + - '**Rashid M**' + - Thunga G + publisher: Journal of nephrology + date: '2025-05-12' + link: https://doi.org/10.1007/s40620-025-02297-3 + type: paper + year: 2025 +- id: doi:10.1371/journal.pone.0308244 + title: What drives the effectiveness of social distancing in combating COVID-19 + across U.S. states? + authors: + - Mu-Jeung Yang + - Maclean Gaulin + - Nathan Seegert + - Yang Fan + publisher: PLOS One + date: '2025-05-12' + link: https://doi.org/g9qxmx + type: paper + group: featured + image: images/NSfigure.png + plugin: sources.py + file: sources.yaml +- id: doi:10.1016/j.cegh.2024.101867 + title: 'Efficacy of corticosteroids in COVID-19: An evidence-based approach from + the published randomized controlled trials' + authors: + - Asha K. Rajan + - '**Muhammed Rashid**' + - Viji Pulikkel Chandran + - Ambalappotta Hafis + - Harsimran Kaur + - Pooja Gopal Poojari + - Vishal Shanbhag + - Souvik Chaudhuri + - Sreedharan Nair + - Girish Thunga + publisher: Clinical Epidemiology and Global Health + date: '2025-05-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-105000121504&partnerID=MN8TOARS + type: paper + year: 2025 +- id: doi:10.1111/cts.70235 + title: 'Chemoprevention of Gastrointestinal Cancers: An Umbrella Review of Meta-Analyses + of Randomized Controlled Trials and Cohort Studies.' + authors: + - Chan JE + - Shanmugham S + - Kumar S + - Lee YY + - Ching SM + - '**Chaiyakunapruk N**' + - Veettil SK + publisher: Clinical and translational science + date: '2025-05-01' + link: https://doi.org/10.1111/cts.70235 + type: paper + year: 2025 +- id: doi:10.1002/cam4.70952 + title: Changes in Breast and Cervical Cancer Incidence by Stage at Diagnosis During + the COVID-19 Pandemic in Utah. + authors: + - Michelle Mumper + - '**Leisha Nolen**' + - Kimberly A Herget + - Rachel R Codden + - Marjorie E Carter + - Marie Nagata + - Morgan M Millar + publisher: Cancer medicine + date: '2025-05-01' + link: https://doi.org/10.1002/cam4.70952 + type: paper + year: 2025 +- id: doi:10.1007/s11538-025-01432-2 + title: A Theoretical Framework to Quantify the Tradeoff Between Individual and Population + Benefits of Expanded Antibiotic Use + authors: + - Cormac R. LaPrete + - Sharia M. Ahmed + - Damon J. A. Toth + - Jody R. Reimer + - Valerie M. Vaughn + - Frederick R. Adler + - Lindsay T. Keegan + publisher: Bulletin of Mathematical Biology + date: '2025-04-30' + link: https://doi.org/g9hcn4 + orcid: 0000-0002-8526-3007 + plugin: sources.py + file: sources.yaml + type: paper + group: featured + image: images/abx_frame.png +- id: doi:10.12688/wellcomeopenres.24037.1 + title: 'Protocol to produce a systematic Arenavirus and Hantavirus host-pathogen + database: Project ArHa.' + authors: + - Simons D + - Rivero R + - Guiote AM + - Gordon HLM + - Milne GC + - Rickard G + - Redding DW + - '**Seifert SN**' + publisher: Wellcome open research + date: '2025-04-28' + link: https://doi.org/10.12688/wellcomeopenres.24037.1 + type: paper + year: 2025 +- id: doi:10.1145/3706598.3713385 + title: 'Visualization Guardrails: Designing Interventions Against Cherry-Picking + in Interactive Data Explorers' + authors: + - Maxim Lisnic + - Zach Cutler + - Marina Kogan + - '**Alexander Lex**' + publisher: Proceedings of the 2025 CHI Conference on Human Factors in Computing + Systems + date: '2025-04-26' + link: https://doi.org/10.1145/3706598.3713385 + type: paper + year: 2025 +- id: doi:10.1177/20420188251319476 + title: 'Role of vitamin D in the development and progression of diabetic kidney + disease: an overview of meta-analyses.' + authors: + - Chackochan A + - '**Rashid M**' + - Reghunath SR + - Poojari PG + - Thunga G + - Nagri SK + - Guddattu V + - Shenoy RP + - Prasad Shenoy V + - Acharya LD + publisher: Therapeutic advances in endocrinology and metabolism + date: '2025-04-26' + link: https://doi.org/10.1177/20420188251319476 + type: paper + year: 2025 +- id: doi:10.1145/3706598.3714305 + title: Crowdsourced Think-Aloud Studies + authors: + - Zach Cutler + - Lane Harrison + - Carolina Nobre + - '**Alexander Lex**' + publisher: Proceedings of the 2025 CHI Conference on Human Factors in Computing + Systems + date: '2025-04-26' + link: https://doi.org/10.1145/3706598.3714305 + type: paper + year: 2025 +- id: doi:10.1016/j.jflm.2025.102877 + title: 'Prognostic value of hepatorenal markers to predict mortality in Paraquat + Poisoning: a meta-analysis and retrospective validation.' + authors: + - Kaur H + - Prathiksha AS + - Johnson AS + - '**Rashid M**' + - Kunhikatta V + - Poojari PG + - Bakkannavar SM + - Balakrishnan JM + - Thunga G + publisher: Journal of forensic and legal medicine + date: '2025-04-22' + link: https://doi.org/10.1016/j.jflm.2025.102877 + type: paper + year: 2025 +- id: doi:10.1097/mlr.0000000000002145 + title: Combining Machine Learning and Comparative Effectiveness Methodology to Study + Primary Care Pharmacotherapy Pathways for Veterans With Depression. + authors: + - Ozmen O + - Rush E + - Park BH + - '**Jones M**' + - Trafton J + - Brenner L + - Rupper RW + - Ward M + - Nebeker JR + - Pizer SD + publisher: Medical care + date: '2025-04-22' + link: https://doi.org/10.1097/mlr.0000000000002145 + type: paper + year: 2025 +- id: doi:10.37285/ijpsn.2025.18.2.13 + title: 'Vaccine Hesitancy in Malappuram District, Kerala: A Public Health Concern' + authors: + - Sruthi Hari + - Danisha Pattani + - Dilip Chandrashekhar + - '**Muhammed Rashid PP**' + publisher: International Journal of Pharmaceutical Sciences and Nanotechnology + date: '2025-04-15' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-105008203290&partnerID=MN8TOARS + type: paper + year: 2025 +- id: doi:10.1101/2025.04.08.647854 + title: 229E- and NL63-like coronaviruses in phyllostomid bats, Belize + authors: + - Ansil BR + - Lei G + - Santos AJ + - Letko M + - '**Seifert SN**' + - Fenton MB + - Simmons NB + - Relich RF + - Becker DJ + publisher: bioRxiv + date: '2025-04-10' + link: https://doi.org/10.1101/2025.04.08.647854 + type: preprint + year: 2025 +- id: doi:10.1136/bmjgh-2024-018220 + title: 'Impact of all-oral bedaquiline-based shorter regimens in the treatment of + drug-resistant tuberculosis: a systematic review and meta-analysis.' + authors: + - Ginenus Fekadu + - Tadesse Tolossa + - Firomsa Bekele + - Xiaohan Chen + - Yan He + - Jing Yu + - Xinyao Yi + - Ming Liu + - Getahun Fetensa + - Dinka Dugassa + - Ebisa Turi + - Tesfaye Regassa Feyissa + - '**Nathorn Chaiyakunapruk**' + - Lianping Yang + - Shanquan Chen + - Wai-Kit Ming + publisher: BMJ global health + date: '2025-04-07' + link: https://doi.org/10.1136/bmjgh-2024-018220 + type: paper + year: 2025 +- id: doi:10.1007/s11606-025-09494-7 + title: Change in Outpatient Care Following Migration Among Veterans with Experience + of Housing Instability. + authors: + - Ann Elizabeth Montgomery + - Kalea Jones + - Kashfi Pandit + - Aerin J deRussy + - '**Richard E Nelson**' + - Joshua S Richman + - Thomas H Byrne + publisher: Journal of general internal medicine + date: '2025-04-07' + link: https://doi.org/10.1007/s11606-025-09494-7 + type: paper + year: 2025 +- id: doi:10.1016/j.idc.2025.02.018 + title: Clinical Manifestations and Outcomes of SARS-CoV-2 Infection in Children + and Adolescents. + authors: + - '**Andrew T Pavia**' + publisher: Infectious disease clinics of North America + date: '2025-04-04' + link: https://doi.org/10.1016/j.idc.2025.02.018 + type: paper + year: 2025 +- id: doi:10.1542/hpeds.2024-007994 + title: Guideline-Concordant Antibiotic Use in Children With Community-Acquired Pneumonia. + authors: + - James W Antoon + - Hui Nian + - Jessica Todd + - Krow Ampofo + - Yuwei Zhu + - Laura Sartori + - Jakobi Johnson + - Donald H Arnold + - Justine Stassun + - '**Andrew T Pavia**' + - Carlos G Grijalva + - Derek J Williams + publisher: Hospital pediatrics + date: '2025-04-01' + link: https://doi.org/10.1542/hpeds.2024-007994 + type: paper + year: 2025 +- id: doi:10.1001/jamanetworkopen.2025.2787 + title: Environmental and Health Care Personnel Sampling and Unobserved Clostridium + difficile Transmission in ICU. + authors: + - Lindsay T Keegan + - Windy Tanner + - Brian Orleans + - Rachel B Slayton + - John A Jernigan + - L Clifford McDonald + - Judith Noble-Wang + - Molly Leecaster + - Candace Haroldsen + - '**Karim Khader**' + - '**Damon J A Toth**' + - Tierney O'Sullivan + - '**Matthew H Samore**' + - William Brazelton + - Michael Rubin + publisher: JAMA network open + date: '2025-04-01' + link: https://doi.org/10.1001/jamanetworkopen.2025.2787 + type: paper + year: 2025 +- id: doi:10.1513/annalsats.202408-806oc + title: 'An Explanatory Mixed-Methods Study of Intensive Care Unit Net Benefit: Triage + and Trajectory for Sepsis and Acute Respiratory Failure.' + authors: + - George L Anesi + - Lindsay W Glassman + - Erich Dress + - M Kit Delgado + - Fernando X Barreda + - Gabriel J Escobar + - Vincent X Liu + - Scott D Halpern + - '**Julia E Szymczak**' + publisher: Annals of the American Thoracic Society + date: '2025-04-01' + link: https://doi.org/10.1513/annalsats.202408-806oc + type: paper + year: 2025 +- id: doi:10.1145/3715124 + title: 'ScaWL: Scaling k-WL (Weisfeiler-Lehman) Algorithms in Memory and Performance + on Shared and Distributed-Memory Systems' + authors: + - Coby Soss + - Aravind Sukumaran Rajam + - Janet Layne + - Edoardo Serra + - Mahantesh Halappanavar + - '**Assefaw H. Gebremedhin**' + publisher: ACM Transactions on Architecture and Code Optimization + date: '2025-03-30' + link: https://doi.org/10.1145/3715124 + type: paper + year: 2025 +- id: doi:10.1177/10901981251327189 + title: 'The Impact of Social Norms on Diffusion Dynamics: A Simulation of E-Cigarette + Use Behavior.' + authors: + - Piombo SE + - '**Vega Yon GG**' + - Valente TW + publisher: 'Health education & behavior : the official publication of the Society + for Public Health Education' + date: '2025-03-27' + link: https://doi.org/10.1177/10901981251327189 + type: paper + year: 2025 +- id: doi:10.1007/s43477-025-00158-6 + title: 'Adaptation and Evaluation of Strengthening Families Program for Parents + and Youth 10–14 for Delivery in a Virtual Format: An Application of FRAME' + authors: + - '**Elizabeth H. Weybright**' + - Katherine Hampilos + - Kelley M. Pascoe + - Brittany Rhoades Cooper + - Cassandra Grinstead + publisher: Global Implementation Research and Applications + date: '2025-03-21' + link: https://doi.org/10.1007/s43477-025-00158-6 + type: paper + year: 2025 +- id: doi:10.3390/ijerph22030449 + title: 'Machine Learning in Predicting Child Malnutrition: A Meta-Analysis of Demographic + and Health Surveys Data.' + authors: + - Rao B + - '**Rashid M**' + - Hasan MG + - Thunga G + publisher: International journal of environmental research and public health + date: '2025-03-18' + link: https://doi.org/10.3390/ijerph22030449 + type: paper + year: 2025 +- id: doi:10.1093/haschl/qxaf045 + title: 'Understanding macroeconomic indicators affected by COVID-19 containment + policies in the United States: a scoping review.' + authors: + - Jeong-Yeon Cho + - Tejashree Prakash + - Wayne Lam + - Nathan Seegert + - '**Matthew H Samore**' + - '**Andrew T Pavia**' + - '**Richard E Nelson**' + - '**Nathorn Chaiyakunapruk**' + publisher: Health affairs scholar + date: '2025-03-06' + link: https://doi.org/10.1093/haschl/qxaf045 + type: paper + year: 2025 + group: featured + image: images/HAS.png +- id: doi:10.1001/jamanetworkopen.2025.1429 + title: Characteristics and Antibiotic Preferences of US Adults Reporting Frequent + Use vs No Use of Antibiotics. + authors: + - Alistair Thorpe + - Rachael A Lee + - Angela Fagerlin + - Valerie M Vaughn + - '**Julia E Szymczak**' + publisher: JAMA network open + date: '2025-03-03' + link: https://doi.org/10.1001/jamanetworkopen.2025.1429 + type: paper + year: 2025 +- id: doi:10.1016/j.puhe.2025.02.031 + title: 'Effect of video-assisted educational intervention on improving knowledge, + attitude and practice among mothers of children below five years on malnutrition: + A systematic review.' + authors: + - Pujari S + - '**Rashid M**' + - Thunga G + - Shetty RS + - Mundkur SC + - Devi ES + - B U + - Nair S + publisher: Public health + date: '2025-02-28' + link: https://doi.org/10.1016/j.puhe.2025.02.031 + type: paper + year: 2025 +- id: doi:10.1038/s42003-025-07746-0 + title: Viral genomic features predict Orthopoxvirus reservoir hosts. + authors: + - Tseng KK + - Koehler H + - Becker DJ + - Gibb R + - Carlson CJ + - Pilar Fernandez MD + - '**Seifert SN**' + publisher: Communications biology + date: '2025-02-26' + link: https://doi.org/10.1038/s42003-025-07746-0 + type: paper + year: 2025 +- id: doi:10.1093/cid/ciae593 + title: Impact of Clinician Feedback Reports on Antibiotic Use in Children Hospitalized + With Community-acquired Pneumonia. + authors: + - Kathleen Chiotos + - Lauren Dutcher + - Robert W Grundmeier + - Didien Meyahnwi + - Ebbing Lautenbach + - Melinda M Neuhauser + - Lauri A Hicks + - Keith W Hamilton + - Yun Li + - '**Julia E Szymczak**' + - Brandi M Muller + - Morgan Congdon + - Emily Kane + - Jessica Hart + - Levon Utidjian + - Leigh Cressman + - Anne Jaskowiak-Barr + - Jeffrey S Gerber + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2025-02-24' + link: https://doi.org/10.1093/cid/ciae593 + type: paper + year: 2025 +- id: doi:10.1016/j.jpedsurg.2025.162244 + title: 'The Age-stratified Cost of Biliary Atresia: A MarketScan®-Based Cost Analysis.' + authors: + - Anastasia M Kahan + - Anna Gongjoo Holley + - Joshua Horns + - Catalina Jaramillo + - M Kyle Jensen + - Katie W Russell + - '**Richard E Nelson**' + - Benjamin S Brooke + - Stephen Guthery + - Zachary J Kastenberg + publisher: Journal of pediatric surgery + date: '2025-02-18' + link: https://doi.org/10.1016/j.jpedsurg.2025.162244 + type: paper + year: 2025 +- id: doi:10.1186/s12942-025-00387-w + title: Use of individual Google Location History data to identify consumer encounters + with food outlets. + authors: + - Oje O + - Amram O + - Hystad P + - '**Gebremedhin A**' + - Monsivais P + publisher: International journal of health geographics + date: '2025-02-15' + link: https://doi.org/10.1186/s12942-025-00387-w + type: paper + year: 2025 +- id: doi:10.3390/pathogens14020179 + title: How Does Vaccine-Induced Immunity Compare to Infection-Acquired Immunity + in the Dynamics of COVID-19? + authors: + - Hewage IM + - Hull-Nye D + - '**Schwartz EJ**' + publisher: Pathogens (Basel, Switzerland) + date: '2025-02-11' + link: https://doi.org/10.3390/pathogens14020179 + type: paper + year: 2025 +- id: doi:10.1101/2025.02.08.25321747 + title: Projecting climate change impacts on inter-epidemic risk of Rift Valley fever + across East Africa + authors: + - Evan A Eskew + - '**Erin Clancey**' + - Deepti Singh + - Silvia Situma + - Luke Nyakarahuka + - M Kariuki Njenga + - Scott L Nuismer + publisher: medRxiv + date: '2025-02-10' + link: https://doi.org/10.1101/2025.02.08.25321747 + type: preprint + year: 2025 +- id: doi:10.1017/s0950268825000159 + title: Dientamoeba fragilis cases identified by molecular detection, Utah, United + States, 2014-2024. + authors: + - Anna Jones + - Marc Roger Couturier + - '**Andrew T Pavia**' + - Daniel T Leung + publisher: Epidemiology and infection + date: '2025-02-07' + link: https://doi.org/10.1017/s0950268825000159 + type: paper + year: 2025 +- id: doi:10.1080/28322134.2025.2455706 + title: 'CHAT-S Study Protocol: A randomized controlled trial of a health insurance + literacy education program for young adult cancer survivors.' + authors: + - Mary Killela + - Cindy A Turner + - Amy Chevrier + - Monique Stefanou + - Perla L Vaca Lopez + - Heydon K Kaddas + - Karely M van Thiel Berghuijs + - Echo L Warner + - Giselle K Perez + - Austin R Waters + - Douglas B Fair + - '**Richard E Nelson**' + - Mark A Lewis + - Elyse R Park + - Anne C Kirchhoff + publisher: Preventive oncology & epidemiology + date: '2025-02-06' + link: https://doi.org/10.1080/28322134.2025.2455706 + type: paper + year: 2025 +- id: doi:10.1017/ash.2024.485 + title: Association between social activities and risk of COVID-19 in a cohort of + healthcare personnel. + authors: + - Shoemaker H + - Li H + - Zhang Y + - '**Mayer J**' + - Rubin M + - Haroldsen C + - Millar MM + - '**Gesteland PH**' + - '**Pavia AT**' + - '**Keegan LT**' + - Cole JM + - Dorsan E + - Doane M + - Stratford K + - Samore M + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2025-01-30' + link: https://doi.org/10.1017/ash.2024.485 + type: paper + year: 2025 +- id: doi:10.3390/ijerph22020183 + title: Scoping Review of Outdoor and Land-Based Prevention Programs for Indigenous + Youth in the United States and Canada. + authors: + - Price FM + - Weaselhead-Running Crane TD + - '**Weybright EH**' + publisher: International journal of environmental research and public health + date: '2025-01-28' + link: https://doi.org/10.3390/ijerph22020183 + type: paper + year: 2025 +- id: doi:10.1016/j.heliyon.2025.e42146 + title: 'Role of C5aR2 in prognosis of patients with acute respiratory distress syndrome + through negative modulation of C5a: A prospective observational study.' + authors: + - '**Rashid M**' + - Nair S + - Poojari PG + - Belle VS + - Kunhikatta V + - Vaz DA + - Shanbhag V + - Chandran VP + - Chitrapady S + - Thunga G + publisher: Heliyon + date: '2025-01-23' + link: https://doi.org/10.1016/j.heliyon.2025.e42146 + type: paper + year: 2025 +- id: doi:10.1016/j.fertnstert.2025.01.012 + title: 'Comparing gestational carrier with uterine transplantation in uterine-factor + infertility: a cost-effectiveness analysis.' + authors: + - Joshua C Combs + - Meghan U Yamasaki + - Maura Dougherty + - Kiley Hunkler + - Elizabeth B Osmundsen + - Jaime Roura-Monllor + - Robert J Stillman + - Micah J Hill + - Kate Devine + - Alan H DeCherney + - '**Richard E Nelson**' + - Jeanne E O'Brien + publisher: Fertility and sterility + date: '2025-01-22' + link: https://doi.org/10.1016/j.fertnstert.2025.01.012 + type: paper + year: 2025 +- id: doi:10.1101/2025.01.17.633514 + title: 'Protocol for the production of an Arenavirus and Hantavirus host-pathogen + database: Project ArHa' + authors: + - Simons D + - Rivero R + - Guiote AM + - Gordon H + - Milne GC + - Rickard G + - Redding DW + - '**Seifert SN**' + publisher: bioRxiv + date: '2025-01-18' + link: https://doi.org/10.1101/2025.01.17.633514 + type: preprint + year: 2025 +- id: doi:10.1111/mec.17651 + title: 'Population Genomics Reveals Local Adaptation Related to Temperature Variation + in Two Stream Frog Species: Implications for Vulnerability to Climate Warming.' + authors: + - Forester BR + - Cicchino AS + - Shah AA + - Mudd AB + - Anderson EC + - Bredeson JV + - Crawford AJ + - Dunham JB + - Ghalambor CK + - '**Landguth EL**' + - Murray BW + - Rokhsar D + - Funk WC + publisher: Molecular ecology + date: '2025-01-17' + link: https://doi.org/10.1111/mec.17651 + type: paper + year: 2025 +- id: doi:10.1089/heq.2024.0067 + title: 'COVID-19 Vaccine Rollout Strategies in Utah from Local Health Departments'' + Perspectives: A Qualitative Analysis of Focus Group Discussions.' + authors: + - '**Duong KNC**' + - Veettil SK + - '**Nelson RE**' + - Jones BE + - '**Pavia AT**' + - Nguyen DT + - '**Jones MM**' + - '**Samore MH**' + - Zickmund SL + - Galyean P + - '**Chaiyakunapruk N**' + publisher: Health equity + date: '2025-01-13' + link: https://doi.org/10.1089/heq.2024.0067 + type: paper + year: 2025 +- id: doi:10.1007/s00590-024-04151-x + title: Value driven outcome (VDO) assessment for the treatment of olecranon fractures. + authors: + - Makoa Mau + - Tyler Thorne + - Minkyoung Yoo + - Silvia Soule + - '**Richard E Nelson**' + - Timothy Torrez + - Michael Amick + - Kayla Gates + - Eleanor Sato + - David L Rothberg + - Lucas S Marchand + publisher: 'European journal of orthopaedic surgery & traumatology : orthopedie + traumatologie' + date: '2025-01-07' + link: https://doi.org/10.1007/s00590-024-04151-x + type: paper + year: 2025 +- id: doi:10.1515/em-2024-0020 + title: Time-varying reproductive number estimation for practical application in + structured populations. + authors: + - '**Clancey E**' + - '**Lofgren ET**' + publisher: Epidemiologic methods + date: '2025-01-06' + link: https://doi.org/10.1515/em-2024-0020 + type: paper + year: 2025 + group: featured + image: images/clancy_figure.png +- id: doi:10.2174/0127724328290595240509051331 + title: 'Efficacy and Safety of Glycopyrrolate in the Management of Organophosphate + and Carbamate Poisoning: A Systematic Review.' + authors: + - '**Rashid M**' + - Poojari PG + - Chandran VP + - Shetty R + - Kaur H + - Nair S + - Thunga G + publisher: Current reviews in clinical and experimental pharmacology + date: '2025-01-01' + link: https://doi.org/10.2174/0127724328290595240509051331 + type: paper + year: 2025 +- id: doi:10.1111/1475-6773.14428 + title: The effect of a Veterans Affairs rapid rehousing and homelessness prevention + program on long-term housing instability. + authors: + - Alec B Chapman + - Daniel Scharfstein + - Thomas Byrne + - Ann Elizabeth Montgomery + - Ying Suo + - Atim Effiong + - Christa Shorter + - Sophia Huebler + - Tom Greene + - Jack Tsai + - Lillian Gelberg + - Stefan G Kertesz + - '**Richard E Nelson**' + publisher: Health services research + date: '2024-12-30' + link: https://doi.org/10.1111/1475-6773.14428 + type: paper + year: 2024 +- id: doi:10.1016/j.vaccine.2024.126656 + title: Systematic literature review of cost-effectiveness analyses of adult 15- + and 20-valent pneumococcal vaccines. + authors: + - Cho JY + - '**Lee H**' + - Wannaadisai W + - Vietri J + - Chaiyakunapruk N + publisher: Vaccine + date: '2024-12-27' + link: https://doi.org/10.1016/j.vaccine.2024.126656 + type: paper + year: 2024 +- id: doi:10.1101/2024.12.18.24319262 + title: A population-level analysis of armed conflict and diphtheria at the subnational + level in the WHO African Region 2017-2024 + authors: + - O’Sullivan T + - '**Keegan LT**' + publisher: medRxiv + date: '2024-12-20' + link: https://doi.org/10.1101/2024.12.18.24319262 + type: preprint + year: 2024 +- id: doi:10.1080/14737167.2024.2438631 + title: 'Cost-effectiveness studies of brexu-cel for relapsed/refractory B-cell acute + lymphoblastic leukemia and mantle cell lymphoma: a systematic review.' + authors: + - Khatiwada AP + - Kamel AMA + - '**Chaiyakunapruk N**' + - Ngorsuraches S + publisher: Expert review of pharmacoeconomics & outcomes research + date: '2024-12-13' + link: https://doi.org/10.1080/14737167.2024.2438631 + type: paper + year: 2024 +- id: doi:10.1123/jpah.2024-0360 + title: 'Smartphone Google Location History: A Novel Approach to Outdoor Physical + Activity Research.' + authors: + - Amram O + - Oje O + - Larkin A + - Boakye K + - Avery A + - '**Gebremedhin A**' + - Williams B + - Duncan GE + - Hystad P + publisher: Journal of physical activity & health + date: '2024-12-11' + link: https://doi.org/10.1123/jpah.2024-0360 + type: paper + year: 2024 +- id: doi:10.1007/s40273-024-01459-8 + title: 'Value of Innovative Multiple Myeloma Treatments from Patient and Healthcare + Provider Perspectives: Evidence from a Discrete Choice Experiment.' + authors: + - Syeed S + - Tan CJ + - Godara A + - Gooden K + - Tang D + - Slaff S + - Shih YH + - Ngorsuraches S + - '**Chaiyakunapruk N**' + publisher: PharmacoEconomics + date: '2024-12-06' + link: https://doi.org/10.1007/s40273-024-01459-8 + type: paper + year: 2024 +- id: doi:10.1017/ice.2024.197 + title: 'Respiratory equality: let''s stop playing favorites with COVID-19 in the + healthcare setting.' + authors: + - Catherine L Passaretti + - Werner Bischoff + - Justin Chan + - Daniel J Diekema + - Shira Doron + - Carolee Estelle + - Jesse T Jacob + - Tsun Sheng N Ku + - Surbhi Leekha + - Richard A Martinello + - Vidya K Mony + - L Silvia Munoz-Price + - Rekha Murthy + - Judith A O'Donnell + - David H Priest + - Mindy M Sampson + - Thomas J Sandora + - Graham M Snyder + - Michael P Stevens + - '**Julie E Szymczak**' + - Francesca Torriani + - Deborah S Yokoe + - Jonas Marschall + publisher: Infection control and hospital epidemiology + date: '2024-12-04' + link: https://doi.org/10.1017/ice.2024.197 + type: paper + year: 2024 +- id: doi:10.1093/ofid/ofae692 + title: Etiologies of Bloody Diarrhea in Children Presenting With Acute Gastroenteritis + to US Emergency Departments. + authors: + - Paola Fonseca-Romero + - Ben J Brintz + - D Matthew Vierkant + - Jennifer Dien Bard + - Daniel M Cohen + - Ara Festekjian + - Amy L Leber + - Jami T Jackson + - Neena Kanwar + - Chari Larsen + - Rangaraj Selvarangan + - Kimberle C Chapin + - '**Andrew T Pavia**' + - Sharia M Ahmed + - Daniel T Leung + - IMPACT study investigators + publisher: Open forum infectious diseases + date: '2024-11-27' + link: https://doi.org/10.1093/ofid/ofae692 + type: paper + year: 2024 +- id: doi:10.1109/tvcg.2024.3456318 + title: 'PREVis: Perceived Readability Evaluation for Visualizations.' + authors: + - Cabouat AF + - '**He T**' + - Isenberg P + - Isenberg T + publisher: IEEE transactions on visualization and computer graphics + date: '2024-11-25' + link: https://doi.org/10.1109/tvcg.2024.3456318 + type: paper + year: 2024 +- id: doi:10.1109/tvcg.2024.3456186 + title: 'Loops: Leveraging Provenance and Visualization to Support Exploratory Data + Analysis in Notebooks.' + authors: + - Eckelt K + - Gadhave K + - '**Lex A**' + - Streit M + publisher: IEEE transactions on visualization and computer graphics + date: '2024-11-25' + link: https://doi.org/10.1109/tvcg.2024.3456186 + type: paper + year: 2024 +- id: doi:10.1109/tvcg.2024.3456193 + title: 'Aardvark: Composite Visualizations of Trees, Time-Series, and Images.' + authors: + - Lange D + - Judson-Torres R + - Zangle TA + - '**Lex A**' + publisher: IEEE transactions on visualization and computer graphics + date: '2024-11-25' + link: https://doi.org/10.1109/tvcg.2024.3456193 + type: paper + year: 2024 +- id: doi:10.1145/3698587.3701340 + title: A Multi-task Learning Approach for Predicting Spatio-temporal Patient Variables + authors: + - Kaniz Fatema Madhobi + - '**Eric Lofgren**' + - Ananth Kalyanaraman + publisher: Proceedings of the 15th ACM International Conference on Bioinformatics, + Computational Biology and Health Informatics + date: '2024-11-22' + link: https://doi.org/10.1145/3698587.3701340 + type: paper + year: 2024 +- id: doi:10.1101/2024.11.19.624190 + title: Viral susceptibility and innate immune competency of Carollia perspicillata + bat cells produced for virological studies. + authors: + - Victoria Gonzalez + - Cierra Word + - Nahomi Guerra-Pilaquinga + - Mitra Mazinani + - Stephen Fawcett + - Christine Portfors + - Darryl Falzarano + - Alison M Kell + - Rohit K Jangra + - Arinjay Banerjee + - '**Stephanie N Seifert**' + - Michael Letko + publisher: bioRxiv + date: '2024-11-19' + link: https://doi.org/10.1101/2024.11.19.624190 + type: preprint + year: 2024 +- id: doi:10.1038/s41598-024-77730-x + title: Unraveling the complex interplay of sex, endocrinology, and inflammation + in post-Injury articular cartilage breakdown through in silico modeling. + authors: + - C Hutcherson + - B Luke + - '**K Khader**' + - Y Y Dhaher + publisher: Scientific reports + date: '2024-11-19' + link: https://doi.org/10.1038/s41598-024-77730-x + type: paper + year: 2024 +- id: doi:10.1161/jaha.124.037792 + title: 'Projected Cost Savings With Optimal Medication Adherence in Patients With + Cardiovascular Disease Requiring Lipid-Lowering Therapy: A Multinational Economic + Evaluation Study.' + authors: + - Cho JY + - Wilson FA + - Chaikledkaew U + - Chen Y + - Phrommintikul A + - Diaz-Aguilera MA + - Chen Z + - Kim K + - '**Chaiyakunapruk N**' + publisher: Journal of the American Heart Association + date: '2024-11-15' + link: https://doi.org/10.1161/jaha.124.037792 + type: paper + year: 2024 +- id: doi:10.1017/ash.2024.404 + title: A cross-sectional survey of Department of Veterans Affairs laboratory practices + for identification of carbapenem-resistant Acinetobacter baumannii and Pseudomonas + aeruginosa . + authors: + - Sawyer AM + - Ray C + - Klutts JS + - Fitzpatrick M + - Suda KJ + - Hicks N + - Evans M + - '**Jones M**' + - Pfeiffer CD + - Evans CT + - QUERI CARRIAGE Program + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2024-11-11' + link: https://doi.org/10.1017/ash.2024.404 + type: paper + year: 2024 +- id: doi:10.1128/jvi.01453-24 + title: 'Studying bats using a One Health lens: bridging the gap between bat virology + and disease ecology.' + authors: + - Gonzalez V + - Hurtado-Monzón AM + - O'Krafka S + - Mühlberger E + - Letko M + - Frank HK + - Laing ED + - Phelps KL + - Becker DJ + - Munster VJ + - Falzarano D + - Schountz T + - '**Seifert SN**' + - Banerjee A + publisher: Journal of virology + date: '2024-11-05' + link: https://doi.org/10.1128/jvi.01453-24 + type: paper + year: 2024 +- id: doi:10.1001/jamanetworkopen.2024.43396 + title: Cost-Effectiveness of Temporary Financial Assistance for Veterans Experiencing + Housing Instability. + authors: + - '**Richard E Nelson**' + - Alec Chapman + - Thomas Byrne + - Nathorn Chaiyakunapruk + - Ying Suo + - Atim Effiong + - Warren Pettey + - Lillian Gelberg + - Stefan G Kertesz + - Jack Tsai + - Ann Elizabeth Montgomery + publisher: JAMA network open + date: '2024-11-04' + link: https://doi.org/10.1001/jamanetworkopen.2024.43396 + type: paper + year: 2024 +- id: doi:10.1111/irv.70039 + title: 'Real-World Assessment of Economic and Clinical Outcomes in Thai Patients + With Respiratory Syncytial Virus Infection Across Age Groups: A Retrospective + Cohort Analysis.' + authors: + - Khaing W + - Tan CJ + - Patikorn C + - Techasaensiri C + - Pattanaprateep O + - Dhippayom T + - Bruminhent J + - '**Chaiyakunapruk N**' + publisher: Influenza and other respiratory viruses + date: '2024-11-01' + link: https://doi.org/10.1111/irv.70039 + type: paper + year: 2024 +- id: doi:10.1513/annalsats.202403-286oc + title: 'Effectiveness and Safety of an Emergency Department Code Sepsis Protocol: + A Pragmatic Clinical Trial.' + authors: + - Ithan D Peltan + - Joseph R Bledsoe + - Jason R Jacobs + - Danielle Groat + - Carolyn Klippel + - Michelle Adamson + - Gabriel A Hooper + - Nick J Tinker + - Rachel A Foster + - Edward A Stenehjem + - Tamara D Moores Todd + - Adam Balls + - Jennifer Avery + - Gary Brunson + - Jon Jones + - Jeremy Bair + - Andrew Dorais + - '**Matthew H Samore**' + - Catherine L Hough + - Samuel M Brown + publisher: Annals of the American Thoracic Society + date: '2024-11-01' + link: https://doi.org/10.1513/annalsats.202403-286oc + type: paper + year: 2024 +- id: doi:10.1038/s41591-024-03303-0 + title: Economics, equity and avoidable mortality. + authors: + - Cho JY + - '**Chaiyakunapruk N**' + publisher: Nature medicine + date: '2024-11-01' + link: https://doi.org/10.1038/s41591-024-03303-0 + type: paper + year: 2024 +- id: doi:10.1109/msec.2024.3473188 + title: 'Cybersecurity Education: Insights From a Novel Cybersecurity Summer Workshop' + authors: + - James Crabb + - Clemente Izurieta + - Bernard Van Wie + - Olusola Adesope + - '**Assefaw Gebremedhin**' + publisher: IEEE Security & Privacy + date: '2024-11-01' + link: https://doi.org/10.1109/MSEC.2024.3473188 + type: paper + year: 2024 +- id: doi:10.1177/00333549241290676 + title: The Effectiveness of Face Mask Mandates on COVID-19 Transmission in Utah. + authors: + - Horn AC + - Shoemaker HE + - '**Keegan LT**' + publisher: 'Public health reports (Washington, D.C. : 1974)' + date: '2024-10-30' + link: https://doi.org/10.1177/00333549241290676 + type: paper + year: 2024 +- id: doi:10.1145/3659575 + title: 'Applying Generative Machine Learning to Intrusion Detection: A Systematic + Mapping Study and Review' + authors: + - James Halvorsen + - Clemente Izurieta + - Haipeng Cai + - '**Assefaw Gebremedhin**' + publisher: ACM Computing Surveys + date: '2024-10-30' + link: https://doi.org/10.1145/3659575 + type: paper + year: 2024 +- id: doi:10.1097/qad.0000000000004046 + title: 'Real-world clinical and economic outcomes from rapid start antiretroviral + therapy in HIV: systematic review and meta-analysis.' + authors: + - '**Duong KNC**' + - Schmutz HW + - Ben-Umeh KC + - Duru EE + - Rose N + - Trom C + - Chaiyakunapruk N + - Willis C + publisher: AIDS (London, England) + date: '2024-10-24' + link: https://doi.org/10.1097/qad.0000000000004046 + type: paper + year: 2024 +- id: doi:10.1017/s0266462324000333 + title: 'Perceptions of patients and caregivers toward the management of rare disease + in Malaysia: a qualitative research study.' + authors: + - Supian A + - Shafie AA + - Ngu LH + - Ayob H + - '**Chaiyakunapruk N**' + publisher: International journal of technology assessment in health care + date: '2024-10-24' + link: https://doi.org/10.1017/s0266462324000333 + type: paper + year: 2024 +- id: doi:10.1002/jrsm.1764 + title: 'Exploring methodological approaches used in network meta-analysis of psychological + interventions: A scoping review.' + authors: + - Boonpattharatthiti K + - Ruenin G + - Kulwong P + - Lueawattanasakul J + - Saechao C + - Pitak P + - Caldwell DM + - '**Chaiyakunapruk N**' + - Dhippayom T + publisher: Research synthesis methods + date: '2024-10-23' + link: https://doi.org/10.1002/jrsm.1764 + type: paper + year: 2024 +- id: doi:10.1016/j.dsx.2024.103139 + title: 'Determinants of and barriers to diabetes care among patients with serious + mental illness: A scoping review with recommendations.' + authors: + - Prathiksha AS + - Shantaram PM + - '**Rashid M**' + - Poojari PG + - Nair S + - Acharya LD + - Thunga G + publisher: Diabetes & metabolic syndrome + date: '2024-10-22' + link: https://doi.org/10.1016/j.dsx.2024.103139 + type: paper + year: 2024 +- id: doi:10.1145/3627673.3679925 + title: 'Facets of Disparate Impact: Evaluating Legally Consistent Bias in Machine + Learning' + authors: + - Jarren Briscoe + - '**Assefaw Gebremedhin**' + publisher: Proceedings of the 33rd ACM International Conference on Information and + Knowledge Management + date: '2024-10-21' + link: https://doi.org/10.1145/3627673.3679925 + type: paper + year: 2024 +- id: doi:10.1038/s43856-024-00619-3 + title: Impacts of testing and immunity acquired through vaccination and infection + on covid-19 cases in Massachusetts elementary and secondary students. + authors: + - Westyn Branch-Elliman + - Melissa Zeynep Ertem + - '**Richard E Nelson**' + - Anseh Danesharasteh + - David Berlin + - Lloyd Fisher + - Elissa M Schechter-Perkins + publisher: Communications medicine + date: '2024-10-16' + link: https://doi.org/10.1038/s43856-024-00619-3 + type: paper + year: 2024 +- id: doi:10.1002/lrh2.10463 + title: The translation-to-policy learning cycle to improve public health. + authors: + - Amy M Kilbourne + - Melissa Z Braganza + - Dawn M Bravata + - Jack Tsai + - '**Richard E Nelson**' + - Alex Meredith + - Kenute Myrie + - Rachel Ramoni + publisher: Learning health systems + date: '2024-10-11' + link: https://doi.org/10.1002/lrh2.10463 + type: paper + year: 2024 +- id: doi:10.1093/ofid/ofae619 + title: Etiology of Severely Dehydrating Diarrheal Illness in Infants and Young Children + Residing in Low- and Middle-Income Countries. + authors: + - Anna Jones + - Sharia M Ahmed + - James A Platts-Mills + - Karen L Kotloff + - Adam C Levine + - Eric J Nelson + - '**Andrew T Pavia**' + - Ashraful I Khan + - Daniel T Leung + publisher: Open forum infectious diseases + date: '2024-10-11' + link: https://doi.org/10.1093/ofid/ofae619 + type: paper + year: 2024 +- id: doi:10.1097/phh.0000000000001825 + title: 'Navigating the Landscape: Barriers and Facilitators in Electronic Case Reporting + Implementation Across Public Health Agencies.' + authors: + - '**Joel D Hartsell**' + - Catherine Staes + - Katie S Allen + - Angela C Dunn + - Fernando A Wilson + - '**Matthew H Samore**' + - '**Kimberley Shoaf**' + publisher: 'Journal of public health management and practice : JPHMP' + date: '2024-10-05' + link: https://doi.org/10.1097/phh.0000000000001825 + type: paper + year: 2024 +- id: doi:10.1002/1438-390x.12179 + title: Reconstructing mountain goat history in the Olympic Mountains, USA + authors: + - Melissa M. Oscarson + - '**Erin L. Landguth**' + - David O. Wallin + publisher: Population Ecology + date: '2024-10-01' + link: https://doi.org/10.1002/1438-390X.12179 + type: paper + year: 2024 +- id: insightnet:0ea1783aab39367d0dd0 + title: 'Association between insulin adherence and hemoglobin A1c: A systematic review + and meta-analysis' + authors: + - '**Nguyen D**' + - Liang X + - Nguyen S + - Tan C + - Patikorn C + - Veettil S + - Brixner D + - Chaiyakunapruk N + publisher: Journal of managed care & specialty pharmacy + date: '2024-10-01' + link: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11424921/?tool=EBI + type: paper + year: 2024 +- id: doi:10.2196/59830 + title: 'Developing Evidence to Support Policy: Protocol for the StrAtegic PoLicy + EvIdence-Based Evaluation CeNTer (SALIENT).' + authors: + - Pugh MJ + - Haun JN + - White PJ + - Cochran G + - Mohanty AF + - McAndrew LM + - Gordon AJ + - '**Nelson RE**' + - Vanneman ME + - Naranjo DE + - Benzinger RC + - Jones AL + - Kean J + - Zickmund SL + - Fagerlin A + publisher: JMIR research protocols + date: '2024-09-19' + link: https://doi.org/10.2196/59830 + type: paper + year: 2024 +- id: doi:10.1109/tvcg.2024.3456393 + title: Uncertainty Visualization of Critical Points of 2D Scalar Fields for Parametric + and Nonparametric Probabilistic Models. + authors: + - Athawale TM + - Wang Z + - Pugmire D + - Moreland K + - Gong Q + - Klasky S + - Johnson CR + - '**Rosen P**' + publisher: IEEE transactions on visualization and computer graphics + date: '2024-09-10' + link: https://doi.org/10.1109/tvcg.2024.3456393 + type: paper + year: 2024 +- id: doi:10.1017/ash.2024.377 + title: Predicting antibiotic resistance in Enterobacterales to support optimal empiric + treatment of urinary tract infections in outpatient veterans. + authors: + - Ben J Brintz + - Karl Madaras-Kelly + - McKenna Nevers + - Kelly L Echevarria + - Matthew B Goetz + - '**Matthew H Samore**' + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2024-09-09' + link: https://doi.org/10.1017/ash.2024.377 + type: paper + year: 2024 +- id: doi:10.1109/tvcg.2024.3456359 + title: 'A Qualitative Analysis of Common Practices in Annotations: A Taxonomy and + Design Space.' + authors: + - Rahman MD + - Quadri GJ + - Doppalapudi B + - Szafir DA + - '**Rosen P**' + publisher: IEEE transactions on visualization and computer graphics + date: '2024-09-09' + link: https://doi.org/10.1109/tvcg.2024.3456359 + type: paper + year: 2024 +- id: doi:10.70675/e7a3aae1z9bf6z4ac1z969cz6e02b07f0082 + title: 'Encoding with Patterns : A Design Space and Evaluations' + authors: + - '**Tingying He**' + publisher: '' + date: '2024-09-06' + link: https://doi.org/10.70675/e7a3aae1z9bf6z4ac1z969cz6e02b07f0082 + type: paper + year: 2024 +- id: doi:10.1542/hpeds.2023-007589 + title: 'Drivers of Inpatient Subspecialty Consultation Among Pediatric Hospitalists: + A Qualitative Study.' + authors: + - Andrew S Kern-Goldberger + - Danny Bracy + - '**Julia E Szymczak**' + - Denise Gonzalez + - Michael B Rothberg + - Jeffrey S Gerber + - Christopher P Bonafide + publisher: Hospital pediatrics + date: '2024-09-01' + link: https://doi.org/10.1542/hpeds.2023-007589 + type: paper + year: 2024 +- id: doi:10.11124/jbies-23-00246 + title: 'Cost and cost-effectiveness of treatments for rheumatic heart disease in + low- and middle-income countries: a systematic review protocol.' + authors: + - Thangamma Ag M + - Vidyadharan B + - Daniel RP + - Sirur A + - Kumar P + - Thunga P G + - Gopal Poojari P + - '**Rashid M**' + - Mukherjee N + - Bhattacharya P + - John D + publisher: JBI evidence synthesis + date: '2024-09-01' + link: https://doi.org/10.11124/jbies-23-00246 + type: paper + year: 2024 +- id: doi:10.1017/ice.2024.125 + title: 'A call to action: the SHEA research agenda to combat healthcare-associated + infections.' + authors: + - Kwon JH + - Advani SD + - Branch-Elliman W + - Braun BI + - Cheng VC + - Chiotos K + - Douglas P + - Gohil SK + - Keller SC + - Klein EY + - Krein SL + - '**Lofgren ET**' + - Merrill K + - Moehring RW + - Monsees E + - Perri L + - Scaggs Huang F + - Shelly MA + - Skelton F + - Spivak ES + - Sreeramoju PV + - Suda KJ + - Ting JY + - Weston GD + - Yassin MH + - Ziegler MJ + - Mody L + publisher: Infection control and hospital epidemiology + date: '2024-09-01' + link: https://doi.org/10.1017/ice.2024.125 + type: paper + year: 2024 +- id: doi:10.1101/2024.08.28.24312731 + title: A theoretical framework to quantify the tradeoff between individual and population + benefits of expanded antibiotic use + authors: + - LaPrete CR + - Ahmed SM + - '**Toth DJ**' + - Reimer JR + - Vaughn VM + - Adler FR + - '**Keegan LT**' + publisher: Bulletin of mathematical biology + date: '2024-08-28' + link: https://doi.org/10.1101/2024.08.28.24312731 + type: paper + year: 2024 +- id: doi:10.1111/mec.17500 + title: Disentangling effects of dispersal, environment and anthropogenic barriers + on functional connectivity in aquatic systems. + authors: + - Day CC + - Alò D + - Simmons RK + - Cotey SR + - Zarn KE + - Gazeley IF + - Small M + - Fortin MJ + - Bearlin AR + - Smith SR + - '**Landguth EL**' + publisher: Molecular ecology + date: '2024-08-26' + link: https://doi.org/10.1111/mec.17500 + type: paper + year: 2024 +- id: doi:10.1136/bmjqs-2024-017395 + title: What's in a name? On the rhetorical harm of 'never events'. + authors: + - '**Julia Szymczak**' + publisher: BMJ quality & safety + date: '2024-08-16' + link: https://doi.org/10.1136/bmjqs-2024-017395 + type: paper + year: 2024 +- id: doi:10.1016/s1473-3099(24)00416-x + title: 'Trends in infection incidence and antimicrobial resistance in the US Veterans + Affairs Healthcare System: a nationwide retrospective cohort study (2007-22).' + authors: + - Thi Mui Pham + - Yue Zhang + - McKenna Nevers + - Haojia Li + - '**Karim Khader**' + - Yonatan H Grad + - Marc Lipsitch + - Matthew Samore + publisher: The Lancet. Infectious diseases + date: '2024-08-13' + link: https://doi.org/10.1016/s1473-3099(24)00416-x + type: paper + year: 2024 +- id: doi:10.1111/jdi.14285 + title: 'Prevalence of adherence to oral antidiabetic drugs in patients with type + 2 diabetes: A systematic review and meta-analysis.' + authors: + - Boonpattharatthiti K + - Songkla PN + - Chantara J + - Koomsri C + - Krass I + - '**Chaiyakunapruk N**' + - Dhippayom T + publisher: Journal of diabetes investigation + date: '2024-08-12' + link: https://doi.org/10.1111/jdi.14285 + type: paper + year: 2024 +- id: doi:10.1371/journal.pone.0306622 + title: Importance of underlying mechanisms for interpreting relative risk of Clostridioides + difficile infection among antibiotic-exposed patients in healthcare facilities. + authors: + - Mitchell C + - '**Keegan LT**' + - Le TTT + - '**Khader K**' + - Beams A + - '**Samore MH**' + - '**Toth DJA**' + publisher: PloS one + date: '2024-08-08' + link: https://doi.org/10.1371/journal.pone.0306622 + type: paper + year: 2024 +- id: doi:10.1371/journal.pone.0304519 + title: 'Managing institutional conflicts: Stakeholder accounts of communication + between conflict of interest and technology transfer offices.' + authors: + - Matthew S McCoy + - Michaela Ward + - Rebecca Neergaard + - Steven Joffe + - '**Julia E Szymczak**' + publisher: PloS one + date: '2024-08-07' + link: https://doi.org/10.1371/journal.pone.0304519 + type: paper + year: 2024 +- id: doi:10.1017/ash.2024.352 + title: 'Antimicrobial use before and during COVID-19: data from 108 Veterans Affairs + medical centers.' + authors: + - Matthew Bidwell Goetz + - Tina Willson + - '**Michael A Rubin**' + - Vanessa W Stevens + - Christopher J Graber + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2024-08-07' + link: https://doi.org/10.1017/ash.2024.352 + type: paper + year: 2024 +- id: doi:10.7326/m23-2505 + title: 'Diagnostic Discordance, Uncertainty, and Treatment Ambiguity in Community-Acquired + Pneumonia : A National Cohort Study of 115 U.S. Veterans Affairs Hospitals.' + authors: + - Jones BE + - Chapman AB + - Ying J + - Rutter ED + - Nevers MR + - Baker A + - Dean NC + - Fix ML + - Singh H + - Cosby KS + - Taber PA + - Weir CD + - '**Jones MM**' + - '**Samore MH**' + - Butler JM + publisher: Annals of internal medicine + date: '2024-08-06' + link: https://doi.org/10.7326/m23-2505 + type: paper + year: 2024 +- id: doi:10.1111/apt.18095 + title: Socio‐economic association of alcohol use disorder and cardiovascular and + alcohol‐associated liver disease from 2010 to 2019 + authors: + - Pojsakorn Danpanichkul + - Vincent L Chen + - '**Nathorn Chaiyakunapruk**' + - Thanida Auttapracha + - Siwanart Kongarin + - Cheng Han Ng + - Kwanjit Duangsonk + - Mark D Muthiah + - Banthoon Sukphutanan + - Benedix Sim + - Daniel Q Huang + - Yuya Seko + - Brian P Lee + - Hirokazu Takahashi + - Mazen Noureddin + - Jeffrey V Lazarus + - Luis Antonio Díaz + - Juan Pablo Arab + - Jessica Leigh Mellinger + - Suthat Liangpunsakul + - Karn Wijarnpreecha + publisher: Alimentary Pharmacology & Therapeutics + date: '2024-08-01' + link: https://doi.org/10.1111/apt.18095 + type: paper + year: 2024 +- id: doi:10.1542/hpeds.2023-007549 + title: Prevalence of and Risks for Bacterial Infections in Hospitalized Children + With Bronchiolitis. + authors: + - Noelle Cadotte + - Hannah Moore + - Bryan L Stone + - Nicole L Pershing + - Krow Ampofo + - Zhining Ou + - '**Andrew T Pavia**' + - Anne J Blaschke + - Brian Flaherty + - Hillary Crandall + publisher: Hospital pediatrics + date: '2024-08-01' + link: https://doi.org/10.1542/hpeds.2023-007549 + type: paper + year: 2024 +- id: doi:10.1001/jamanetworkopen.2024.25354 + title: Glycated Hemoglobin A1c Time in Range and Dementia in Older Adults With Diabetes. + authors: + - Patricia C Underwood + - Libin Zhang + - David C Mohr + - Julia C Prentice + - '**Richard E Nelson**' + - Andrew E Budson + - Paul R Conlin + publisher: JAMA network open + date: '2024-08-01' + link: https://doi.org/10.1001/jamanetworkopen.2024.25354 + type: paper + year: 2024 +- id: doi:10.1016/j.ahj.2024.06.003 + title: 'Investigating racial and gender disparities in virtual randomized clinical + trial enrollment: Insights from the BE ACTIVE study.' + authors: + - Michael P Fortunato + - Anthony Girard + - Samantha Coratti + - David Farraday + - Laurie Norton + - Charles Rareshide + - Jingsan Zhu + - Neel Chokshi + - '**Julia E Szymczak**' + - Tamar Klaiman + - Louise B Russell + - Dylan S Small + - Mitesh S Patel + - Kevin G M Volpp + - Alexander C Fanaroff + publisher: American heart journal + date: '2024-07-30' + link: https://doi.org/10.1016/j.ahj.2024.06.003 + type: paper + year: 2024 +- id: doi:10.1111/1475-6773.14351 + title: Information and resources VA health system leaders need to manage enrollment + and retention for Post-9/11 veterans. + authors: + - Todd Brown + - Angela Fagerlin + - '**Matthew H Samore**' + - Alex H S Harris + - Patrick Galyean + - Susan Zickmund + - Warren B P Pettey + - Megan E Vanneman + publisher: Health services research + date: '2024-07-28' + link: https://doi.org/10.1111/1475-6773.14351 + type: paper + year: 2024 +- id: doi:10.4269/ajtmh.24-0035 + title: Contrasting Perceptions, Knowledge, and Actions around Lyme Disease in an + Urban Area of Emerging Lyme Disease and an Area of Endemic Lyme Disease in the + Northeastern United States. + authors: + - Kacey C Ernst + - '**Pilar Fernandez**' + - Maria Diuk-Wasser + - Aaron J Enriquez + - Kevin Berry + - Mary H Hayden + publisher: The American journal of tropical medicine and hygiene + date: '2024-07-23' + link: https://doi.org/10.4269/ajtmh.24-0035 + type: paper + year: 2024 +- id: doi:10.1136/bmjqs-2024-017292 + title: Is hospital-onset bacteraemia and fungaemia an actionable quality measure? + authors: + - Chanu Rhee + - Payal Patel + - '**Julia Szymczak**' + publisher: BMJ quality & safety + date: '2024-07-22' + link: https://doi.org/10.1136/bmjqs-2024-017292 + type: paper + year: 2024 +- id: doi:10.1136/bmjqs-2023-016831 + title: 'Evaluation of hospital-onset bacteraemia and fungaemia in the USA as a potential + healthcare quality measure: a cross-sectional study.' + authors: + - Surbhi Leekha + - Gwen L Robinson + - Jesse T Jacob + - Scott Fridkin + - Andi Shane + - Anna Sick-Samuels + - Aaron M Milstone + - Rajeshwari Nair + - Eli Perencevich + - Mireia Puig-Asensio + - Takaaki Kobayashi + - '**Jeanmarie Mayer**' + - Julia Lewis + - Susan Bleasdale + - Eric Wenzler + - Alfredo J Mena Lora + - Jonathan Baghdadi + - Gregory M Schrank + - Eli Wilber + - Amalia A Aldredge + - Joseph Sharp + - Kelly E Dyer + - Lea Kendrick + - Viraj Ambalam + - Scott Borgetti + - Anna Carmack + - Alexis Gushiken + - Ashka Patel + - Sujan Reddy + - Clayton H Brown + - Raymund B Dantes + - Anthony D Harris + - CDC Prevention Epicenters Program + publisher: BMJ quality & safety + date: '2024-07-22' + link: https://doi.org/10.1136/bmjqs-2023-016831 + type: paper + year: 2024 +- id: doi:10.3389/fpubh.2024.1408193 + title: 'Infectious disease surveillance needs for the United States: lessons from + Covid-19.' + authors: + - Lipsitch M + - Bassett MT + - Brownstein JS + - Elliott P + - Eyre D + - Grabowski MK + - Hay JA + - Johansson MA + - Kissler SM + - Larremore DB + - Layden JE + - Lessler J + - Lynfield R + - MacCannell D + - Madoff LC + - Metcalf CJE + - Meyers LA + - Ofori SK + - Quinn C + - Bento AI + - Reich NG + - Riley S + - Rosenfeld R + - '**Samore MH**' + - Sampath R + - Slayton RB + - Swerdlow DL + - Truelove S + - Varma JK + - Grad YH + publisher: Frontiers in public health + date: '2024-07-15' + link: https://doi.org/10.3389/fpubh.2024.1408193 + type: paper + year: 2024 +- id: doi:10.1007/s40273-024-01400-z + title: Measuring the Direct Medical Costs of Hospital-Onset Infections Using an + Analogy Costing Framework. + authors: + - Scott RD 2nd + - Culler SD + - Baggs J + - Reddy SC + - Slifka KJ + - Magill SS + - Kazakova SV + - Jernigan JA + - '**Nelson RE**' + - Rosenman RE + - Wandschneider PR + publisher: PharmacoEconomics + date: '2024-07-05' + link: https://doi.org/10.1007/s40273-024-01400-z + type: paper + year: 2024 +- id: doi:10.1186/s44263-024-00053-6 + title: Estimated global and regional economic burden of genital herpes simplex virus + infection among 15-49 year-olds in 2016. + authors: + - Chaiyakunapruk N + - Lee SWH + - Kulchaitanaroaj P + - Rayanakorn A + - '**Lee H**' + - Looker KJ + - Hutubessy R + - Gottlieb SL + publisher: BMC global and public health + date: '2024-07-02' + link: https://doi.org/10.1186/s44263-024-00053-6 + type: paper + year: 2024 +- id: doi:10.1016/j.socnet.2023.11.005 + title: 'Imaginary network motifs: Structural patterns of false positives and negatives + in social networks' + authors: + - Kyosuke Tanaka + - '**George G. Vega Yon**' + publisher: Social Networks + date: '2024-07-01' + link: https://www.scopus.com/inward/record.url?eid=2-s2.0-85179162089&partnerID=MN8TOARS + type: paper + year: 2024 +- id: doi:10.1177/0044118x241263968 + title: 'Conceptualization of Firearm-Related Terms Among Rural Adolescents: Definitions + Matter.' + authors: + - '**Weybright EH**' + - Hall A + - Willoughby J + - Dalve K + - Schleimer J + - Ellyson A + - Watters C + - Gause E + - Kuklinski MR + - Varrella G + - Rowhani-Rahbar A + publisher: Youth & society + date: '2024-07-01' + link: https://doi.org/10.1177/0044118x241263968 + type: paper + year: 2024 +- id: doi:10.1016/j.socnet.2024.02.001 + title: Assessing the dynamics of PrEP adoption in a national-scale physician network + authors: + - Matthew Sargent + - Luke J. Matthews + - '**George Vega Yon**' + - Erik D. Storholm + - Allison J. Ober + - Harold D. Green + publisher: Social Networks + date: '2024-07-01' + link: http://dx.doi.org/10.1016/j.socnet.2024.02.001 + type: paper + year: 2024 +- id: doi:10.1016/j.idm.2024.06.002 + title: A simple modification to the classical SIR model to estimate the proportion + of under-reported infections using case studies in flu and COVID-19. + authors: + - Kalachev L + - Graham J + - '**Landguth EL**' + publisher: Infectious Disease Modelling + date: '2024-06-16' + link: https://doi.org/10.1016/j.idm.2024.06.002 + type: paper + year: 2024 +- id: doi:10.1093/cid/ciad743 + title: 'Excellence in Antibiotic Stewardship: A Mixed-Methods Study Comparing High-, + Medium-, and Low-Performing Hospitals.' + authors: + - Valerie M Vaughn + - Sarah L Krein + - Adam L Hersh + - Whitney R Buckel + - Andrea T White + - Jennifer K Horowitz + - Payal K Patel + - Tejal N Gandhi + - Lindsay A Petty + - Emily S Spivak + - Steven J Bernstein + - Anurag N Malani + - Leonard B Johnson + - Robert A Neetz + - Scott A Flanders + - Patrick Galyean + - Elisabeth Kimball + - Kennedi Bloomquist + - Tobias Zickmund + - Susan L Zickmund + - '**Julia E Szymczak**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2024-06-14' + link: https://doi.org/10.1093/cid/ciad743 + type: paper + year: 2024 +- id: doi:10.1016/j.lana.2024.100806 + title: 'Incorporating social determinants of health into transmission modeling of + COVID-19 vaccine in the US: a scoping review.' + authors: + - '**Duong KNC**' + - '**Nguyen DT**' + - Kategeaw W + - Liang X + - Khaing W + - Visnovsky LD + - Veettil SK + - McFarland MM + - '**Nelson RE**' + - Jones BE + - '**Pavia AT**' + - Coates E + - '**Khader K**' + - Love J + - '**Vega Yon GG**' + - Zhang Y + - Willson T + - Dorsan E + - '**Toth DJA**' + - '**Jones MM**' + - '**Samore MH**' + - Chaiyakunapruk N + publisher: Lancet regional health. Americas + date: '2024-06-07' + link: https://doi.org/10.1016/j.lana.2024.100806 + type: paper + year: 2024 +- id: doi:10.1371/journal.pdig.0000528 + title: Automating detection of diagnostic error of infectious diseases using machine + learning. + authors: + - Peterson KS + - Chapman AB + - Widanagamaachchi W + - Sutton J + - Ochoa B + - Jones BE + - Stevens V + - Classen DC + - '**Jones MM**' + publisher: PLOS digital health + date: '2024-06-07' + link: https://doi.org/10.1371/journal.pdig.0000528 + type: paper + year: 2024 +- id: doi:10.21203/rs.3.rs-4536102/v1 + title: 'Economic Evaluation of Fixed-dose Drug Combinations: A Systematic Review' + authors: + - Phung TL + - Ong DT + - Ngo NT + - Pham TT + - Nguyen HT + - '**Duong KN**' + - Dang MTN + - Alcusky MJ + - Amante DJ + - Nguyen HL + publisher: Journal of Applied Pharmaceutical Science + date: '2024-06-06' + link: https://doi.org/10.21203/rs.3.rs-4536102/v1 + type: paper + year: 2024 +- id: doi:10.1177/01632787241237515 + title: The Role of Cooperative Extension in Delivering Training and Technical Assistance + to Support Evidence-Based Behavioral Health Practices in Rural Communities. + authors: + - '**Weybright E**' + - Phibbs S + - Watters C + - Myers A + - Peavy M + - Martin A + publisher: Evaluation & the health professions + date: '2024-06-01' + link: https://doi.org/10.1177/01632787241237515 + type: paper + year: 2024 +- id: doi:10.1093/jamia/ocae112 + title: 'Pneumonia diagnosis performance in the emergency department: a mixed-methods + study about clinicians'' experiences and exploration of individual differences + and response to diagnostic performance feedback.' + authors: + - Butler JM + - Taft T + - Taber P + - Rutter E + - Fix M + - Baker A + - Weir C + - Nevers M + - Classen D + - Cosby K + - '**Jones M**' + - Chapman A + - Jones BE + publisher: 'Journal of the American Medical Informatics Association : JAMIA' + date: '2024-06-01' + link: https://doi.org/10.1093/jamia/ocae112 + type: paper + year: 2024 +- id: doi:10.1111/cgf.15092 + title: 'Persist: Persistent and Reusable Interactions in Computational Notebooks' + authors: + - K. Gadhave + - Z. Cutler + - '**A. Lex**' + publisher: Computer Graphics Forum + date: '2024-06-01' + link: https://doi.org/10.1111/cgf.15092 + type: paper + year: 2024 +- id: doi:10.3390/jcm13133740 + title: 'Clostridioides Difficile Infection in the Elderly: Trend Analysis from 2000 + to 2019' + authors: + - Pojsakorn Danpanichkul + - Kwanjit Duangsonk + - Ekdanai Uawithya + - Siwanart Kongarin + - Daniel M Simadibrata + - Natchaya Polpichai + - Thanathip Suenghataiphorn + - Phuuwadith Wattanachayakul + - Yanfang Pang + - Banthoon Sukphutanan + - Apichat Kaewdech + - Nuttada Panpradist + - '**Nathorn Chaiyakunapruk**' + - Jakrapun Pupaibool + - Karn Wijarnpreecha + publisher: Journal of Clinical Medicine + date: '2024-06-01' + link: https://www.mdpi.com/2077-0383/13/13/3740 + type: paper + year: 2024 +- id: doi:10.1080/14740338.2024.2359616 + title: 'Vaccine-associated paralytic poliomyelitis in oral polio vaccine recipients: + disproportionality analysis using VAERS and systematic review.' + authors: + - Suares JE + - Khan S + - Aadrika A + - Poojari PG + - '**Rashid M**' + - Thunga G + publisher: Expert opinion on drug safety + date: '2024-05-30' + link: https://doi.org/10.1080/14740338.2024.2359616 + type: paper + year: 2024 +- id: doi:10.1017/ice.2024.79 + title: Development and implementation of a nationwide multidrug-resistant organism + tracking and alert system for Veterans Affairs medical centers. + authors: + - Pfeiffer CD + - '**Jones MM**' + - Klutts JS + - Francis QA + - Flegal HM + - Murray AO + - Willson TM + - Hicks NR + - Evans CT + - Evans ME + publisher: Infection control and hospital epidemiology + date: '2024-05-24' + link: https://doi.org/10.1017/ice.2024.79 + type: paper + year: 2024 +- id: doi:10.1136/ip-2023-045104 + title: Strategies for recruiting adolescents in rural areas in firearm injury research. + authors: + - '**Weybright E**' + - Hall A + - Ellyson AM + - Varrella G + - Kuklinski MR + - Gause E + - Schleimer J + - Dalve K + - Rowhani-Rahbar A + publisher: 'Injury prevention : journal of the International Society for Child and + Adolescent Injury Prevention' + date: '2024-05-20' + link: https://doi.org/10.1136/ip-2023-045104 + type: paper + year: 2024 +- id: doi:10.1371/journal.pntd.0012086 + title: 'Financial hardship among patients suffering from neglected tropical diseases: + A systematic review and meta-analysis of global literature.' + authors: + - Patikorn C + - Cho JY + - Higashi J + - Huang XX + - '**Chaiyakunapruk N**' + publisher: PLoS neglected tropical diseases + date: '2024-05-13' + link: https://doi.org/10.1371/journal.pntd.0012086 + type: paper + year: 2024 +- id: doi:10.1007/s11096-024-01742-w + title: 'Medication errors in emergency departments: a systematic review and meta-analysis + of prevalence and severity.' + authors: + - Nguyen PTL + - Phan TAT + - Vo VBN + - Ngo NTN + - Nguyen HT + - Phung TL + - Kieu MTT + - Nguyen TH + - '**Duong KNC**' + publisher: International journal of clinical pharmacy + date: '2024-05-11' + link: https://doi.org/10.1007/s11096-024-01742-w + type: paper + year: 2024 +- id: doi:10.1145/3613904.3642813 + title: Do You See What I See? A Qualitative Study Eliciting High-Level Visualization + Comprehension + authors: + - Ghulam Jilani Quadri + - Arran Zeyu Wang + - Zhehao Wang + - Jennifer Adorno + - '**Paul Rosen**' + - Danielle Albers Szafir + publisher: Proceedings of the CHI Conference on Human Factors in Computing Systems + date: '2024-05-11' + link: https://doi.org/10.1145/3613904.3642813 + type: paper + year: 2024 +- id: doi:10.1145/3613904.3642448 + title: '"Yeah, this graph doesn''t show that": Analysis of Online Engagement with + Misleading Data Visualizations' + authors: + - Maxim Lisnic + - '**Alexander Lex**' + - Marina Kogan + publisher: Proceedings of the CHI Conference on Human Factors in Computing Systems + date: '2024-05-11' + link: https://doi.org/10.1145/3613904.3642448 + type: paper + year: 2024 +- id: doi:10.1017/ash.2024.36 + title: Facility- and patient-level factors associated with implementation of contact + precautions in hospitalized VA patients with positive CRE cultures. + authors: + - Wilson GM + - Fitzpatrick M + - Suda KJ + - Poggensee L + - '**Jones M**' + - Evans ME + - Evans CT + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2024-05-03' + link: https://doi.org/10.1017/ash.2024.36 + type: paper + year: 2024 +- id: doi:10.1016/j.chpulm.2024.100060 + title: A Qualitative Study Identifying the Potential Risk Mechanisms Leading to + Hospitalization for Patients With Chronic Lung Disease. + authors: + - Gary E Weissman + - Jasmine A Silvestri + - Folasade Lapite + - Isabelle S Mullen + - Nicholas S Bishop + - Tyler Kmiec + - Amy Summer + - Michael W Sims + - Vivek N Ahya + - Shreya Kangovi + - Tamar A Klaiman + - '**Julia E Szymczak**' + - Joanna L Hart + publisher: CHEST pulmonary + date: '2024-05-03' + link: https://doi.org/10.1016/j.chpulm.2024.100060 + type: paper + year: 2024 +- id: doi:10.1002/ecy.4318 + title: 'SNAPSHOT USA 2021: A third coordinated national camera trap survey of the + United States.' + authors: + - Hila Shamon + - Roi Maor + - Michael V Cove + - Roland Kays + - Jessie Adley + - Peter D Alexander + - David N Allen + - Maximilian L Allen + - Cara L Appel + - Evan Barr + - Erika L Barthelmess + - Carolina Baruzzi + - Kelli Bashaw + - Guillaume Bastille-Rousseau + - Madison E Baugh + - Jerrold Belant + - John F Benson + - Bethany A Bespoyasny + - Tori Bird + - Daniel A Bogan + - LaRoy S E Brandt + - Claire E Bresnan + - Jarred M Brooke + - Frances E Buderman + - Suzannah G Buzzell + - Amanda E Cheeseman + - M Colter Chitwood + - Petros Chrysafis + - Merri K Collins + - D Parks Collins + - Justin A Compton + - L Mike Conner + - Olivia G Cosby + - Stephanie S Coster + - Benjamin Crawford + - Anthony P Crupi + - Andrea K Darracq + - Miranda L Davis + - Brett A DeGregorio + - Kimberly L Denningmann + - Kyle D Dougherty + - Ace Driver + - Andrew J Edelman + - E Hance Ellington + - Susan N Ellis-Felege + - Caroline N Ellison + - Jean E Fantle-Lepczyk + - Zach J Farris + - Jorie Favreau + - '**Pilar Fernandez**' + - M Caitlin Fisher-Reid + - Matthew C Fitzpatrick + - Elizabeth A Flaherty + - Tavis D Forrester + - Sarah R Fritts + - Travis Gallo + - Brian D Gerber + - Sean T Giery + - Jessica L Glasscock + - Alex D Gonatas + - Anna C Grady + - Austin M Green + - Tremaine Gregory + - Noel Griffin + - Robert H Hagen + - Christopher P Hansen + - Lonnie P Hansen + - Steven C Hasstedt + - Haydée Hernández-Yáñez + - Daniel J Herrera + - Robert V Horan + - Victoria L Jackson + - Luanne Johnson + - Mark J Jordan + - Willaine Kahano + - Joseph Kiser + - Travis W Knowles + - Molly M Koeck + - Caroline Koroly + - Kellie M Kuhn + - Erin K Kuprewicz + - Diana J R Lafferty + - Scott D LaPoint + - Marcus Lashley + - Richard G Lathrop + - Thomas E Lee + - Christopher A Lepczyk + - Damon B Lesmeister + - Jason V Lombardi + - Robert A Long + - Robert C Lonsinger + - Paula MacKay + - Sean P Maher + - David S Mason + - Joshua J Millspaugh + - Remington J Moll + - Jessica B Moon + - Alessio Mortelliti + - Alexis M Mychajliw + - Christopher M Nagy + - Sean A Neiswenter + - Dana L Nelson + - Claire E Nemes + - Clayton K Nielsen + - Elizabeth Olson + - M Teague O'Mara + - Brian J O'Neill + - Blake R Page + - Elizabeth Parsons + - Brent S Pease + - Mary E Pendergast + - Mike Proctor + - Heather Quick + - Christine C Rega-Brodsky + - Michael S Rentz + - Kylie Rezendes + - Daric Rich + - Derek R Risch + - Andrea Romero + - Brigit R Rooney + - Christopher T Rota + - Corey A Samples + - Christopher M Schalk + - Çağan H Sekercioğlu + - Maksim Sergeyev + - Austin B Smith + - Daniel S Smith + - Jinelle H Sperry + - Jennifer L Stenglein + - Michael K Stokes + - Johnathon S Stutzman + - Kimberly R Todd + - John P Vanek + - Wren Varga + - Zachary M Wardle + - Stephen L Webb + - Nathaniel H Wehr + - Laura S Whipple + - Christopher A Whittier + - Jane S Widness + - Jacque Williamson + - Andrew M Wilson + - Alexander J Wolf + - Marketa Zimova + - Adam S Zorn + - William J McShea + publisher: Ecology + date: '2024-05-01' + link: https://doi.org/10.1002/ecy.4318 + type: paper + year: 2024 +- id: doi:10.1101/2024.04.18.24306047 + title: Model-based estimates of age-structured SARS-CoV-2 epidemiology in households + authors: + - '**Toth DJ**' + - Sheets TR + - Beams AB + - Ahmed SM + - Seegert N + - Love J + - '**Keegan LT**' + - '**Samore MH**' + publisher: BMC public health + date: '2024-04-19' + link: https://doi.org/10.1101/2024.04.18.24306047 + type: paper + year: 2024 +- id: doi:10.4324/9781003271536-20 + title: Adolescent Boredom in Leisure + authors: + - '**Elizabeth Weybright**' + - Linda L. Caldwell + publisher: The Routledge International Handbook of Boredom + date: '2024-04-18' + link: https://doi.org/10.4324/9781003271536-20 + type: paper + year: 2024 +- id: doi:10.1017/ash.2024.44 + title: Factors associated with testing positive for SARS-CoV-2 and evaluation of + a recruitment protocol among healthcare personnel in a COVID-19 vaccine effectiveness + study. + authors: + - Morgan M Millar + - '**Jeanmarie Mayer**' + - Jacob Crook + - Kristina M Stratford + - Tavis Huber + - '**Matthew H Samore**' + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2024-04-16' + link: https://doi.org/10.1017/ash.2024.44 + type: paper + year: 2024 +- id: doi:10.1017/ice.2024.40 + title: Research agenda for transmission prevention within the Veterans Health Administration, + 2024-2028. + authors: + - Matthew Smith + - Chris Crnich + - Curtis Donskey + - Charlesnika T Evans + - Martin Evans + - Michihiko Goto + - Bernardino Guerrero + - Kalpana Gupta + - Anthony Harris + - Natalie Hicks + - '**Karim Khader**' + - Stephen Kralovic + - Linda McKinley + - Michael Rubin + - Nasia Safdar + - Marin L Schweizer + - Suzanne Tovar + - Geneva Wilson + - Trina Zabarsky + - Eli N Perencevich + publisher: Infection control and hospital epidemiology + date: '2024-04-11' + link: https://doi.org/10.1017/ice.2024.40 + type: paper + year: 2024 +- id: doi:10.1161/circulationaha.124.069531 + title: 'Effect of Gamification, Financial Incentives, or Both to Increase Physical + Activity Among Patients at High Risk of Cardiovascular Events: The BE ACTIVE Randomized + Controlled Trial.' + authors: + - Alexander C Fanaroff + - Mitesh S Patel + - Neel Chokshi + - Samantha Coratti + - David Farraday + - Laurie Norton + - Charles Rareshide + - Jingsan Zhu + - Tamar Klaiman + - '**Julia E Szymczak**' + - Louise B Russell + - Dylan S Small + - Kevin G M Volpp + publisher: Circulation + date: '2024-04-07' + link: https://doi.org/10.1161/circulationaha.124.069531 + type: paper + year: 2024 +- id: doi:10.1371/journal.pgph.0002507 + title: 'Drivers of inappropriate use of antimicrobials in South Asia: A systematic + review of qualitative literature.' + authors: + - Murray JL + - Leung DT + - Hanson OR + - Ahmed SM + - '**Pavia AT**' + - Khan AI + - '**Szymczak JE**' + - Vaughn VM + - Patel PK + - Biswas D + - Watt MH + publisher: PLOS global public health + date: '2024-04-04' + link: https://doi.org/10.1371/journal.pgph.0002507 + type: paper + year: 2024 +- id: doi:10.1055/a-2297-9129 + title: User-Centered Design and Implementation of an Interoperable FHIR Application + for Pediatric Pneumonia Prognostication in a Randomized Trial. + authors: + - Robert W Turer + - Stephen C Gradwohl + - Justine Stassun + - Jakobi Johnson + - Jason M Slagle + - Carrie Reale + - Russ Beebe + - Hui Nian + - Yuwei Zhu + - Daniel Albert + - Timothy Coffman + - Hala Alaw + - Tom Wilson + - Shari Just + - Perry Peguillan + - Heather Freeman + - Donald H Arnold + - Judith M Martin + - Srinivasan Suresh + - Scott Coglio + - Ryan Hixon + - Krow Ampofo + - '**Andrew T Pavia**' + - Matthew B Weinger + - Derek J Williams + - Asli O Weitkamp + publisher: Applied clinical informatics + date: '2024-04-02' + link: https://doi.org/10.1055/a-2297-9129 + type: paper + year: 2024 +- id: doi:10.1037/rmh0000256 + title: Cooperative extension as a key partner to behavioral health in rural communities. + authors: + - '**Elizabeth Weybright**' + - Erica L. Doering + - Katherine Hampilos + - John M. Roll + - Celestina Barbosa-Leiker + - Michael G. McDonell + publisher: Journal of Rural Mental Health + date: '2024-04-01' + link: https://doi.org/10.1037/rmh0000256 + type: paper + year: 2024 +- id: doi:10.3390/ijerph21040428 + title: Associations of Anxiety, Insomnia, and Physical Activity during the COVID-19 + Pandemic. + authors: + - Tobin SY + - Halliday TM + - '**Shoaf K**' + - Burns RD + - Baron KG + publisher: International journal of environmental research and public health + date: '2024-04-01' + link: https://doi.org/10.3390/ijerph21040428 + type: paper + year: 2024 +- id: doi:10.1101/2024.03.30.587440 + title: '3D Printers in Hospitals: Bacterial Contamination of Common and Antimicrobial + 3D-Printed Material' + authors: + - Jackson KC + - '**Clancey E**' + - Call DR + - '**Lofgren E**' + publisher: bioRxiv + date: '2024-03-30' + link: https://doi.org/10.1101/2024.03.30.587440 + type: preprint + year: 2024 +- id: doi:10.1111/add.16464 + title: 'Incremental net monetary benefit of using varenicline for smoking cessation: + A systematic review and meta-analysis of economic evaluation studies.' + authors: + - Chaisai C + - Patikorn C + - Thavorn K + - Lee SWH + - '**Chaiyakunapruk N**' + - Veettil SK + publisher: Addiction (Abingdon, England) + date: '2024-03-22' + link: https://doi.org/10.1111/add.16464 + type: paper + year: 2024 +- id: doi:10.1093/cid/ciad710 + title: 'Clinical Impact of Multiplex Molecular Diagnostic Testing in Children With + Acute Gastroenteritis Presenting to an Emergency Department: A Multicenter Prospective + Study.' + authors: + - '**Andrew T Pavia**' + - Daniel M Cohen + - Amy L Leber + - Judy A Daly + - Jami T Jackson + - Rangaraj Selvarangan + - Neena Kanwar + - Jeffrey M Bender + - Jennifer Dien Bard + - Ara Festekjian + - Susan Duffy + - Chari Larsen + - Kristen M Holmberg + - Tyler Bardsley + - Benjamin Haaland + - Kevin M Bourzac + - Christopher Stockmann + - Kimberle C Chapin + - Daniel T Leung + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2024-03-20' + link: https://doi.org/10.1093/cid/ciad710 + type: paper + year: 2024 +- id: doi:10.1186/s12911-024-02469-4 + title: A framework for inferring and analyzing pharmacotherapy treatment patterns. + authors: + - Rush E + - Ozmen O + - Kim M + - Ortegon ER + - '**Jones M**' + - Park BH + - Pizer S + - Trafton J + - Brenner LA + - Ward M + - Nebeker JR + publisher: BMC medical informatics and decision making + date: '2024-03-08' + link: https://doi.org/10.1186/s12911-024-02469-4 + type: paper + year: 2024 +- id: doi:10.1101/2024.03.01.24303412 + title: 'Charting is Never Exciting: Measuring Physician Time Use in Medical Dramas' + authors: + - Jackson KC + - Miller KA + - Hill SM + - Johnson SS + - Reimanis LA + - '**Lofgren ET**' + publisher: medRxiv + date: '2024-03-07' + link: https://doi.org/10.1101/2024.03.01.24303412 + type: preprint + year: 2024 +- id: doi:10.1145/3626252.3630757 + title: A Critical Review of Cybersecurity Education in the United States + authors: + - James Crabb + - Christopher Hundhausen + - '**Assefaw Gebremedhin**' + publisher: Proceedings of the 55th ACM Technical Symposium on Computer Science Education + V. 1 + date: '2024-03-07' + link: https://doi.org/10.1145/3626252.3630757 + type: paper + year: 2024 +- id: doi:10.1186/s13012-024-01348-w + title: 'Protocol for a parallel cluster randomized trial of a participatory tailored + approach to reduce overuse of antibiotics at hospital discharge: the ROAD home + trial.' + authors: + - '**Julia E Szymczak**' + - Lindsay A Petty + - Tejal N Gandhi + - Robert A Neetz + - Adam Hersh + - Angela P Presson + - Peter K Lindenauer + - Steven J Bernstein + - Brandi M Muller + - Andrea T White + - Jennifer K Horowitz + - Scott A Flanders + - Justin D Smith + - Valerie M Vaughn + publisher: 'Implementation science : IS' + date: '2024-03-04' + link: https://doi.org/10.1186/s13012-024-01348-w + type: paper + year: 2024 +- id: doi:10.1542/hpeds.2023-007571 + title: Removal of Race and White Blood Cell Count in an Updated Pediatric Pneumonia + Severity Model. + authors: + - Laura F Sartori + - Hui Nian + - Yuwei Zhu + - Jakobi Johnson + - Justine Stassun + - Krow Ampofo + - Donald H Arnold + - James W Antoon + - '**Andrew T Pavia**' + - Carlos G Grijalva + - Derek J Williams + publisher: Hospital pediatrics + date: '2024-03-01' + link: https://doi.org/10.1542/hpeds.2023-007571 + type: paper + year: 2024 +- id: doi:10.21037/jtd-23-1538 + title: 'Surgical-decision making in the setting of unsuspected N2 disease: a cost-effectiveness + analysis.' + authors: + - Brian Mitzman + - Thomas K Varghese + - Wallace L Akerley + - '**Richard E Nelson**' + publisher: Journal of thoracic disease + date: '2024-02-26' + link: https://doi.org/10.21037/jtd-23-1538 + type: paper + year: 2024 +- id: doi:10.1101/2024.02.14.24302485 + title: Healthcare Worker Staffing Ratios Affect Methicillin-ResistantStaphylococcus + aureusAcquisition + authors: + - Stephanie Sikavitsas Johnson + - Matthew Steven Mietchen + - '**Eric Thomas Lofgren**' + publisher: medRxiv + date: '2024-02-15' + link: https://doi.org/10.1101/2024.02.14.24302485 + type: preprint + year: 2024 +- id: doi:10.1136/ip-2023-045063 + title: 'Circumstances of unintentional fall-related adult deaths: Utah, 2010-2020.' + authors: + - Yanling Shi + - Erica Bennion + - Chuck Ward + - '**Leisha D Nolen**' + publisher: 'Injury prevention : journal of the International Society for Child and + Adolescent Injury Prevention' + date: '2024-02-14' + link: https://doi.org/10.1136/ip-2023-045063 + type: paper + year: 2024 +- id: doi:10.1111/obr.13697 + title: The association of weight loss from anti-obesity medications or bariatric + surgery and apnea-hypopnea index in obstructive sleep apnea. + authors: + - Locke BW + - Gomez-Lumbreras A + - Tan CJ + - Nonthasawadsri T + - Veettil SK + - Patikorn C + - '**Chaiyakunapruk N**' + - '**Chaiyakunapruk N**' + publisher: 'Obesity reviews : an official journal of the International Association + for the Study of Obesity' + date: '2024-02-11' + link: https://doi.org/10.1111/obr.13697 + type: paper + year: 2024 +- id: doi:10.1101/2024.02.08.24302489 + title: Impact of Shifting University Policies During the COVID-19 Pandemic on Self-Reported + Employee Social Networks + authors: + - Johnson SS + - Jackson KC + - '**Lofgren ET**' + publisher: medRxiv + date: '2024-02-08' + link: https://doi.org/10.1101/2024.02.08.24302489 + type: preprint + year: 2024 +- id: doi:10.1017/ice.2024.6 + title: Research agenda for antibiotic stewardship within the Veterans' Health Administration, + 2024-2028. + authors: + - Livorsi DJ + - Branch-Elliman W + - Drekonja D + - Echevarria KL + - Fitzpatrick MA + - Goetz MB + - Graber CJ + - '**Jones MM**' + - Kelly AA + - Madaras-Kelly K + - Morgan DJ + - Stevens VW + - Suda K + - Trautner BW + - Ward MJ + - Jump RLP + publisher: Infection control and hospital epidemiology + date: '2024-02-02' + link: https://doi.org/10.1017/ice.2024.6 + type: paper + year: 2024 +- id: doi:10.18553/jmcp.2024.30.2.112 + title: The impact of a statewide insulin copay cap policy for insured patients with + diabetes in Utah. + authors: + - Li N + - Panchal R + - Giannouchos T + - Pan RJ + - '**Nguyen D**' + - Nohavec R + - Britton L + - Chaiyakunapruk N + - Biskupiak J + - Wilson A + - Brixner D + publisher: Journal of managed care & specialty pharmacy + date: '2024-02-01' + link: https://doi.org/10.18553/jmcp.2024.30.2.112 + type: paper + year: 2024 +- id: doi:10.1377/hlthaff.2023.00730 + title: Temporary Financial Assistance Reduced The Probability Of Unstable Housing + Among Veterans For More Than 1 Year. + authors: + - Alec B Chapman + - Daniel Scharfstein + - Thomas H Byrne + - Ann Elizabeth Montgomery + - Ying Suo + - Atim Effiong + - Tania Velasquez + - Warren Pettey + - Rachel Dalrymple + - Jack Tsai + - '**Richard E Nelson**' + publisher: Health affairs (Project Hope) + date: '2024-02-01' + link: https://doi.org/10.1377/hlthaff.2023.00730 + type: paper + year: 2024 +- id: doi:10.1016/j.jhepr.2024.101020 + title: Global and regional burden of alcohol-associated liver disease and alcohol + use disorder in the elderly. + authors: + - Danpanichkul P + - Suparan K + - Ng CH + - Dejvajara D + - Kongarin S + - Panpradist N + - '**Chaiyakunapruk N**' + - Muthiah MD + - Chen VL + - Huang DQ + - Díaz LA + - Noureddin M + - Arab JP + - Wijarnpreecha K + publisher: 'JHEP reports : innovation in hepatology' + date: '2024-01-26' + link: https://doi.org/10.1016/j.jhepr.2024.101020 + type: paper + year: 2024 +- id: doi:10.1080/14737167.2023.2296562 + title: 'Systematic review of the impact of health care expenditure on health outcome + measures: implications for cost-effectiveness thresholds.' + authors: + - Gloria MAJ + - Thavorncharoensap M + - Chaikledkaew U + - Youngkong S + - Thakkinstian A + - '**Chaiyakunapruk N**' + - Ochalek J + - Culyer AJ + publisher: Expert review of pharmacoeconomics & outcomes research + date: '2024-01-25' + link: https://doi.org/10.1080/14737167.2023.2296562 + type: paper + year: 2024 +- id: doi:10.1093/toxres/tfae006 + title: Clinical characteristics, management, outcome, and cost of stings and bites + in patients admitted to a tertiary care teaching hospital. + authors: + - Patil A + - Chagi A + - Poojari PG + - '**Rashid M**' + - Shivashankar KN + - Thunga G + - Nair S + publisher: Toxicology research + date: '2024-01-13' + link: https://doi.org/10.1093/toxres/tfae006 + type: paper + year: 2024 +- id: doi:10.1093/jamiaopen/ooad102 + title: An economic evaluation of the expansion of electronic case reporting in an + academic healthcare setting. + authors: + - '**Hartsell J**' + - Wilson FA + - '**Shoaf K**' + - Dunn A + - '**Samore MH**' + - Staes CJ + publisher: JAMIA open + date: '2024-01-12' + link: https://doi.org/10.1093/jamiaopen/ooad102 + type: paper + year: 2024 +- id: pmid:38222404 + title: Using natural language processing to study homelessness longitudinally with + electronic health record data subject to irregular observations. + authors: + - Alec B Chapman + - Daniel O Scharfstein + - Ann Elizabeth Montgomery + - Thomas Byrne + - Ying Suo + - Atim Effiong + - Tania Velasquez + - Warren Pettey + - '**Richard E Nelson**' + publisher: AMIA ... Annual Symposium proceedings. AMIA Symposium + date: '2024-01-11' + link: https://pubmed.ncbi.nlm.nih.gov/38222404/ + type: paper + year: 2024 +- id: doi:10.1101/2024.01.10.24301116 + title: 'Unexpected Transmission Dynamics in a University Town: Lessons from COVID-19' + authors: + - '**Erin Clancey**' + - Matthew S Mietchen + - Corrin McMichael + - '**Eric T Lofgren**' + publisher: Epidemiology (Cambridge, Mass.) + date: '2024-01-11' + link: https://doi.org/10.1101/2024.01.10.24301116 + type: paper + year: 2024 + group: featured + image: images/college_transmission.png +- id: doi:10.1016/j.ajog.2023.12.041 + title: Source of variation in cost of obstetrical care for low-risk nulliparas at + term. + authors: + - Brett D Einerson + - Amanda A Allshouse + - Grecio Sandoval + - '**Richard E Nelson**' + - M Sean Esplin + - Michael Varner + - William A Grobman + - Torri D Metz + - Eunice Kennedy Shriver National Institute of Child Health and Human Development + (NICHD) Maternal-Fetal Medicine Units N… + publisher: American journal of obstetrics and gynecology + date: '2024-01-06' + link: https://doi.org/10.1016/j.ajog.2023.12.041 + type: paper + year: 2024 +- id: doi:10.1080/17513758.2023.2298988 + title: 'Investigating the impact of vaccine hesitancy on an emerging infectious + disease: a mathematical and numerical analysis.' + authors: + - Hewage IM + - Church KEM + - '**Schwartz EJ**' + publisher: Journal of biological dynamics + date: '2024-01-04' + link: https://doi.org/10.1080/17513758.2023.2298988 + type: paper + year: 2024 +- id: doi:10.1542/peds.2023-063782 + title: Parent and Clinician Views on Not Using Antibiotics for Mild Community-Acquired + Pneumonia. + authors: + - '**Julia E Szymczak**' + - Ashley A Hayes + - Patricia Labellarte + - Julian Zighelboim + - Amandeep Toor + - Adam B Becker + - Jeffrey S Gerber + - Nathan Kuppermann + - Todd A Florin + publisher: Pediatrics + date: '2024-01-01' + link: https://doi.org/10.1542/peds.2023-063782 + type: paper + year: 2024 +- id: doi:10.1513/annalsats.202306-505oc + title: Impact of Reducing Time-to-Antibiotics on Sepsis Mortality, Antibiotic Use, + and Adverse Events. + authors: + - Donnelly JP + - Seelye SM + - Kipnis P + - McGrath BM + - Iwashyna TJ + - Pogue J + - '**Jones M**' + - Liu VX + - Prescott HC + publisher: Annals of the American Thoracic Society + date: '2024-01-01' + link: https://doi.org/10.1513/annalsats.202306-505oc + type: paper + year: 2024 +- id: doi:10.7324/japs.2024.195834 + title: 'Empirical antibiotics versus definitive antibiotics for Sepsis patients + in Indonesia: A cost-effectiveness analysis' + authors: + - Rini Noviyani + - '**Khanh N. C. Duong**' + - Nhi T. N. Ngo + - Sanjeewa Kularatna + - Agata Widatama + - I Gusti Ayu Made Srinadi + publisher: Journal of Applied Pharmaceutical Science + date: '2024-01-01' + link: https://publons.com/wos-op/publon/67437958/ + type: paper + year: 2024 +- id: doi:10.3233/shti231236 + title: A Linguistic Analysis Examining the Impact of COVID-19 on Pneumonia Diagnosis + and Disease Models. + authors: + - Chapman AB + - Peterson KS + - Rutter E + - Nevers M + - Ying J + - Classen D + - '**Jones M**' + - Samore M + - Jones B + publisher: Studies in health technology and informatics + date: '2024-01-01' + link: https://doi.org/10.3233/shti231236 + type: paper + year: 2024 +- id: doi:10.15419/bmrat.v10i12.851 + title: 'PARP inhibitors in newly diagnosed or recurrent ovarian cancer maintenance + therapy: evidence of efficacy and safety from randomized controlled trials' + authors: + - Phan Nguyen Nhu Quynh + - Phuong Thi Lan Nguyen + - Ha Thi Nguyen + - Toi Lam Phung + - Danielle TuongVy Nguyen + - '**Khanh Ngoc Cong Duong**' + publisher: Biomedical Research and Therapy + date: '2023-12-30' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85192651588&partnerID=MN8TOARS + type: paper + year: 2023 +- id: doi:10.1080/13696998.2023.2270868 + title: Cost-effectiveness analysis of HLA-B*13:01 screening for the prevention of + co-trimoxazole-induced severe cutaneous adverse reactions among HIV-infected patients + in Thailand + authors: + - Warittakorn Kategeaw + - Nontaya Nakkam + - Sasisopin Kiertiburanakul + - Chonlaphat Sukasem + - Wichittra Tassaneeyakul + - '**Nathorn Chaiyakunapruk**' + publisher: Journal of Medical Economics + date: '2023-12-30' + link: https://doi.org/10.1080/13696998.2023.2270868 + type: paper + year: 2023 +- id: doi:10.1080/13696998.2023.2269748 + title: A cost-effectiveness analysis of national smoking cessation services among + chronic obstructive pulmonary disease patients in Thailand. + authors: + - Prasitwarachot R + - Thavorn K + - Patikorn C + - Wattanasirichaigoon S + - Rungruanghiranya S + - Thongphiew A + - '**Chaiyakunapruk N**' + publisher: Journal of medical economics + date: '2023-12-30' + link: https://doi.org/10.1080/13696998.2023.2269748 + type: paper + year: 2023 +- id: doi:10.14309/ajg.0000000000002642 + title: 'From Shadows to Spotlight: Exploring the Escalating Burden of Alcohol-Associated + Liver Disease and Alcohol Use Disorder in Young Women.' + authors: + - Pojsakorn Danpanichkul + - Cheng Han Ng + - Mark Muthiah + - Kanokphong Suparan + - Darren Jun Hao Tan + - Kwanjit Duangsonk + - Banthoon Sukphutanan + - Siwanart Kongarin + - Nateeluck Harinwan + - Nuttada Panpradist + - Hirokazu Takahashi + - Takumi Kawaguchi + - Polathep Vichitkunakorn + - '**Nathorn Chaiyakunapruk**' + - Surakit Nathisuwan + - Daniel Huang + - Juan Pablo Arab + - Mazen Noureddin + - Jessica Leigh Mellinger + - Karn Wijarnpreecha + publisher: The American journal of gastroenterology + date: '2023-12-26' + link: https://doi.org/10.14309/ajg.0000000000002642 + type: paper + year: 2023 +- id: doi:10.1109/tvcg.2023.3326941 + title: Design Characterization for Black-and-White Textures in Visualization. + authors: + - '**He T**' + - Zhong Y + - Isenberg P + - Isenberg T + publisher: IEEE transactions on visualization and computer graphics + date: '2023-12-25' + link: https://doi.org/10.1109/tvcg.2023.3326941 + type: paper + year: 2023 +- id: doi:10.1177/20406207231216080 + title: 'Efficacy of complement inhibitors for patients with paroxysmal nocturnal + hemoglobinuria: a systematic review and meta-analysis.' + authors: + - Lee J + - '**Lee H**' + - Kim S + - Suh HS + publisher: Therapeutic advances in hematology + date: '2023-12-14' + link: https://doi.org/10.1177/20406207231216080 + type: paper + year: 2023 +- id: doi:10.1155/2023/6685108 + title: Community Science Strategies Reveal Distributional Patterns of Treponeme-Associated + Hoof Disease in Washington Elk (Cervus canadensis). + authors: + - Winter SN + - Fernández MDP + - '**Clancey E**' + - Garrison K + - Mansfield K + - Wild MA + publisher: Transboundary and emerging diseases + date: '2023-12-14' + link: https://doi.org/10.1155/2023/6685108 + type: paper + year: 2023 +- id: doi:10.1017/ash.2023.500 + title: Treatment effectiveness of antibiotic therapy in Veterans with multidrug-resistant + Acinetobacter spp. bacteremia. + authors: + - Vivo A + - Fitzpatrick MA + - Suda KJ + - Wilson GM + - '**Jones MM**' + - Evans ME + - Evans CT + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2023-12-12' + link: https://doi.org/10.1017/ash.2023.500 + type: paper + year: 2023 +- id: doi:10.12788/fp.0438 + title: Effect of Multidisciplinary Transitional Pain Service on Health Care Use + and Costs Following Orthopedic Surgery. + authors: + - Minkyoung Yoo + - Michael J Buys + - '**Richard E Nelson**' + - Shardool Patel + - Kimberlee M Bayless + - Zachary Anderson + - Julie B Hales + - Benjamin S Brooke + publisher: 'Federal practitioner : for the health care professionals of the VA, + DoD, and PHS' + date: '2023-12-12' + link: https://doi.org/10.12788/fp.0438 + type: paper + year: 2023 +- id: doi:10.2196/50985 + title: 'Economic Burden of Mosquito-Borne Diseases in Low- and Middle-Income Countries: + Protocol for a Systematic Review.' + authors: + - Chilakam N + - Lakshminarayanan V + - Keremutt S + - Rajendran A + - Thunga G + - Poojari PG + - '**Rashid M**' + - Mukherjee N + - Bhattacharya P + - John D + publisher: JMIR research protocols + date: '2023-12-11' + link: https://doi.org/10.2196/50985 + type: paper + year: 2023 +- id: doi:10.1542/peds.2023-062422 + title: Previous Infection and Effectiveness of COVID-19 Vaccination in Middle- and + High-School Students. + authors: + - Olivia M Almendares + - Jasmine D Ruffin + - Abigail H Collingwood + - '**Leisha D Nolen**' + - William A Lanier + - Sarah Rebecca Dash + - Allison Avrich Ciesla + - Ryan Wiegand + - Jacqueline E Tate + - Hannah L Kirking + publisher: Pediatrics + date: '2023-12-01' + link: https://doi.org/10.1542/peds.2023-062422 + type: paper + year: 2023 +- id: doi:10.1101/2023.11.13.23298464 + title: 'Assessing the Impact of Mask Mandates on SARS-CoV-2 Transmission: A Case + Study of Utah' + authors: + - Horn AC + - Shoemaker HE + - '**Keegan LT**' + publisher: medRxiv + date: '2023-11-13' + link: https://doi.org/10.1101/2023.11.13.23298464 + type: preprint + year: 2023 + group: featured + image: images/Efm.png +- id: doi:10.1007/s40471-023-00336-w + title: A New Paradigm for Pandemic Preparedness. + authors: + - Nina H Fefferman + - John S McAlister + - Belinda S Akpa + - Kelechi Akwataghibe + - Fahim Tasneema Azad + - Katherine Barkley + - Amanda Bleichrodt + - Michael J Blum + - L Bourouiba + - Yana Bromberg + - K Selçuk Candan + - Gerardo Chowell + - Erin Clancey + - Fawn A Cothran + - Sharon N DeWitte + - '**Pilar Fernandez**' + - David Finnoff + - D T Flaherty + - Nathaniel L Gibson + - Natalie Harris + - Qiang He + - Eric T Lofgren + - Debra L Miller + - James Moody + - Kaitlin Muccio + - Charles L Nunn + - Monica Papeș + - Ioannis Ch Paschalidis + - Dana K Pasquale + - J Michael Reed + - Matthew B Rogers + - Courtney L Schreiner + - Elizabeth B Strand + - Clifford S Swanson + - Heather L Szabo-Rogers + - Sadie J Ryan + publisher: Current epidemiology reports + date: '2023-11-09' + link: https://doi.org/10.1007/s40471-023-00336-w + type: paper + year: 2023 +- id: doi:10.1093/jnci/djad135 + title: 'Cost-effectiveness analysis of 7 treatments in metastatic hormone-sensitive + prostate cancer: a public-payer perspective.' + authors: + - Minkyoung Yoo + - '**Richard E Nelson**' + - Benjamin Haaland + - Maura Dougherty + - Zachary A Cutshall + - Rhea Kohli + - Rylee Beckstead + - Manish Kohli + publisher: Journal of the National Cancer Institute + date: '2023-11-08' + link: https://doi.org/10.1093/jnci/djad135 + type: paper + year: 2023 +- id: doi:10.31219/osf.io/5v98j_v1 + title: A comprehensive evaluation of life sciences data resources reveals significant + accessibility barriers + authors: + - Sehi L'Yi + - Harrison G. Zhang + - Andrew Patrick Mar + - Thomas Chris Smits + - Lawrence Weru + - Sofía Rojas + - '**Alexander Lex**' + - Nils Gehlenborg + publisher: Preprint + date: '2023-11-03' + link: https://doi.org/10.31219/osf.io/5v98j_v1 + type: preprint + year: 2023 +- id: doi:10.1111/bcp.15818 + title: Integrating real‐world data in cost‐effectiveness analysis of universal HLA‐B*15:02 + screening in Malaysia + authors: + - Huey Yi Chong + - Kheng-Seang Lim + - Si-Lei Fong + - Fatiha Hana Shabaruddin + - Maznah Dahlui + - Pauline Siew Mei Lai + - Ching-Ching Ng + - '**Nathorn Chaiyakunapruk**' + publisher: British Journal of Clinical Pharmacology + date: '2023-11-01' + link: https://doi.org/10.1111/bcp.15818 + type: paper + year: 2023 +- id: doi:10.1093/cid/ciad388 + title: Active Surveillance and Contact Precautions for Preventing Methicillin-Resistant + Staphylococcus aureus Healthcare-Associated Infections During the COVID-19 Pandemic. + authors: + - Evans ME + - Simbartl LA + - McCauley BP + - Flarida LK + - '**Jones MM**' + - Harris AD + - Perencevich EN + - '**Rubin MA**' + - Hicks NR + - Kralovic SM + - Roselle GA + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2023-11-01' + link: https://doi.org/10.1093/cid/ciad388 + type: paper + year: 2023 +- id: doi:10.1016/j.virol.2023.109905 + title: Genetic and functional basis of the reduction effect in bacteriophage ΦX174. + authors: + - Bailes CL + - Biggs KRH + - Scott L + - Wichman HA + - '**Schwartz EJ**' + publisher: Virology + date: '2023-10-27' + link: https://doi.org/10.1016/j.virol.2023.109905 + type: paper + year: 2023 +- id: doi:10.1007/s11606-023-08337-7 + title: Temporary Financial Assistance for Housing Expenditures and Mortality and + Suicide Outcomes Among US Veterans. + authors: + - '**Nelson RE**' + - Montgomery AE + - Suo Y + - Effiong A + - Pettey W + - Gelberg L + - Kertesz SG + - Tsai J + - Byrne T + publisher: Journal of general internal medicine + date: '2023-10-26' + link: https://doi.org/10.1007/s11606-023-08337-7 + type: paper + year: 2023 +- id: doi:10.1080/01621459.2023.2252041 + title: 'Power and multicollinearity in small networks: A discussion of "Tale of + Two Datasets: Representativeness and Generalisability of Inference for Samples + of Networks" by Krivitsky, Coletti & Hens.' + authors: + - '**Vega Yon GG**' + publisher: Journal of the American Statistical Association + date: '2023-10-19' + link: https://doi.org/10.1080/01621459.2023.2252041 + type: paper + year: 2023 +- id: doi:10.3390/jcm12206456 + title: 'The Surreptitious Burden of Nonalcoholic Fatty Liver Disease in the Elderly + in the Asia-Pacific Region: An Insight from the Global Burden of Disease Study + 2019.' + authors: + - Danpanichkul P + - Kongarin S + - Permpatdechakul S + - Polpichai N + - Duangsonk K + - Manosroi W + - '**Chaiyakunapruk N**' + - Mousa OY + - Kim D + - Chen VL + - Wijarnpreecha K + publisher: Journal of clinical medicine + date: '2023-10-11' + link: https://doi.org/10.3390/jcm12206456 + type: paper + year: 2023 +- id: doi:10.3390/cancers15204930 + title: 'Cost-Utility and Budget Impact Analyses of Oral Chemotherapy for Stage III + Colorectal Cancer: Real-World Evidence after Policy Implementation in Thailand.' + authors: + - Phisalprapa P + - Kositamongkol C + - Korphaisarn K + - Akewanlop C + - Srimuninnimit V + - Supakankunti S + - Apiraksattayakul N + - '**Chaiyakunapruk N**' + publisher: Cancers + date: '2023-10-11' + link: https://doi.org/10.3390/cancers15204930 + type: paper + year: 2023 +- id: doi:10.21105/joss.05781 + title: 'epiworldR: Fast Agent-Based Epi Models' + authors: + - Derek Meyer + - '**George G Vega Yon**' + publisher: Journal of Open Source Software + date: '2023-10-03' + link: https://doi.org/10.21105/joss.05781 + type: paper + year: 2023 +- id: doi:10.1007/s10980-023-01735-6 + title: Simulation-based insights into community uniqueness within fragmented landscapes + authors: + - Adriana Lozada + - Casey C. Day + - '**Erin L. Landguth**' + - Angéline Bertin + publisher: Landscape Ecology + date: '2023-10-01' + link: https://doi.org/10.1007/s10980-023-01735-6 + type: paper + year: 2023 +- id: doi:10.1136/bmjopen-2023-071799 + title: Scoping review of modelling studies assessing the impact of disruptions to + essential health services during COVID-19. + authors: + - Sajesh K Veettil + - Luke Schwerer + - Warittakorn Kategeaw + - '**Damon Toth**' + - '**Matthew H Samore**' + - Raymond Hutubessy + - '**Nathorn Chaiyakunapruk**' + publisher: BMJ open + date: '2023-09-26' + link: https://doi.org/10.1136/bmjopen-2023-071799 + type: paper + year: 2023 +- id: doi:10.3389/fpubh.2023.1206988 + title: 'Disparities in COVID-19 related outcomes in the United States by race and + ethnicity pre-vaccination era: an umbrella review of meta-analyses.' + authors: + - '**Duong KNC**' + - Le LM + - Veettil SK + - Saidoung P + - Wannaadisai W + - '**Nelson RE**' + - Friedrichs M + - Jones BE + - '**Pavia AT**' + - '**Jones MM**' + - '**Samore MH**' + - Chaiyakunapruk N + publisher: Frontiers in public health + date: '2023-09-07' + link: https://doi.org/10.3389/fpubh.2023.1206988 + type: paper + year: 2023 +- id: doi:10.1017/ash.2023.418 + title: Analysis of seasonal variation of antibiotic prescribing for respiratory + tract diagnoses in primary care practices. + authors: + - Lacey Serletti + - Lauren Dutcher + - Kathleen O Degnan + - '**Julia E Szymczak**' + - Valerie Cluzet + - Michael Z David + - Leigh Cressman + - Lindsay W Glassman + - Keith W Hamilton + - Centers for Disease Control and Prevention (CDC) Prevention Epicenters Program + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2023-09-05' + link: https://doi.org/10.1017/ash.2023.418 + type: paper + year: 2023 +- id: doi:10.1093/ajcp/aqad044 + title: Development and validation of a standardized blood culture contamination + definition and metric dashboard for a large health care system. + authors: + - Hancock JA + - Campbell S + - '**Jones MM**' + - Wang-Rodriguez J + - VHA Microbiology SME Workgroup + - Klutts JS + publisher: American journal of clinical pathology + date: '2023-09-01' + link: https://doi.org/10.1093/ajcp/aqad044 + type: paper + year: 2023 +- id: doi:10.3390/healthcare11172453 + title: Cost-Effectiveness Analysis of Pharmacist Adherence Interventions in People + Living with HIV/AIDS in Pakistan. + authors: + - Ahmed A + - Dujaili JA + - Chuah LH + - Hashmi FK + - Le LKD + - Chatha ZF + - Khanal S + - Awaisu A + - '**Chaiyakunapruk N**' + publisher: Healthcare (Basel, Switzerland) + date: '2023-09-01' + link: https://doi.org/10.3390/healthcare11172453 + type: paper + year: 2023 +- id: doi:10.1177/0044118x221081152 + title: Can’t You See I’m Getting Bored? The Social Context as a Moderator of Adolescent + Leisure Boredom and Alcohol Use + authors: + - '**Elizabeth Weybright**' + - Jonathon J. Beckmeyer + - Linda L. Caldwell + - Lisa Wegner + - Erica Doering + - Edward A. Smith + publisher: Youth & Society + date: '2023-09-01' + link: https://doi.org/10.1177/0044118X221081152 + type: paper + year: 2023 +- id: doi:10.1109/tvcg.2022.3189883 + title: Automatic Scatterplot Design Optimization for Clustering Identification. + authors: + - Quadri GJ + - Nieves JA + - Wiernik BM + - '**Rosen P**' + publisher: IEEE transactions on visualization and computer graphics + date: '2023-09-01' + link: https://doi.org/10.1109/tvcg.2022.3189883 + type: paper + year: 2023 +- id: doi:10.1001/jamainternmed.2023.2749 + title: A Statewide Quality Initiative to Reduce Unnecessary Antibiotic Treatment + of Asymptomatic Bacteriuria. + authors: + - Valerie M Vaughn + - Ashwin Gupta + - Lindsay A Petty + - Anurag N Malani + - Danielle Osterholzer + - Payal K Patel + - Mariam Younas + - Steven J Bernstein + - Stephanie Burdick + - David Ratz + - '**Julia E Szymczak**' + - Elizabeth McLaughlin + - Tawny Czilok + - Tanima Basu + - Jennifer K Horowitz + - Scott A Flanders + - Tejal N Gandhi + publisher: JAMA internal medicine + date: '2023-09-01' + link: https://doi.org/10.1001/jamainternmed.2023.2749 + type: paper + year: 2023 +- id: doi:10.1093/jpids/piad054 + title: Validation of Childhood Pneumonia Prognostic Models for Use in Emergency + Care Settings. + authors: + - James W Antoon + - Hui Nian + - Krow Ampofo + - Yuwei Zhu + - Laura F Sartori + - Jakobi Johnson + - Donald H Arnold + - Justine Stassun + - '**Andrew T Pavia**' + - Carlos G Grijalva + - Derek J Williams + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2023-08-30' + link: https://doi.org/10.1093/jpids/piad054 + type: paper + year: 2023 +- id: doi:10.31219/osf.io/fd8zj + title: 'Exploring Annotation Strategies in Professional Visualizations: Insights + from Prominent US News Portals' + authors: + - Dilshadur Rahman + - Ghulam Jilani Quadri + - '**Paul Rosen**' + publisher: Preprint + date: '2023-08-30' + link: https://doi.org/10.31219/osf.io/fd8zj + type: preprint + year: 2023 +- id: doi:10.1186/s12874-023-02010-7 + title: An innovative sequential mixed-methods approach to evaluating clinician acceptability + during implementation of a standardized labor induction protocol. + authors: + - Rebecca Feldman Hamm + - Lisa D Levine + - '**Julia E Szymczak**' + - Samuel Parry + - Sindhu K Srinivas + - Rinad S Beidas + publisher: BMC medical research methodology + date: '2023-08-29' + link: https://doi.org/10.1186/s12874-023-02010-7 + type: paper + year: 2023 +- id: doi:10.1111/mec.17098 + title: Corridor-based approach with spatial cross-validation reveals scale-dependent + effects of geographic distance, human footprint and canopy cover on grizzly bear + genetic connectivity. + authors: + - Palm EC + - '**Landguth EL**' + - Holden ZA + - Day CC + - Lamb CT + - Frame PF + - Morehouse AT + - Mowat G + - Proctor MF + - Sawaya MA + - Stenhouse G + - Whittington J + - Zeller KA + publisher: Molecular ecology + date: '2023-08-21' + link: https://doi.org/10.1111/mec.17098 + type: paper + year: 2023 +- id: doi:10.1097/md.0000000000034814 + title: 'Choosing Veterans Affairs: Determinants of post-9/11 Veterans'' enrollment + in Veterans Affairs health care.' + authors: + - Megan E Vanneman + - '**Matthew H Samore**' + - Tianyu Zheng + - Warren B P Pettey + - Angela Fagerlin + - Alex H S Harris + publisher: Medicine + date: '2023-08-18' + link: https://doi.org/10.1097/md.0000000000034814 + type: paper + year: 2023 +- id: doi:10.31219/osf.io/hdzyv + title: 'reVISit: Supporting Scalable Evaluation of Interactive Visualizations' + authors: + - Yiren Ding + - Jack Wilburn + - Hilson Shrestha + - Akim Ndlovu + - Kiran Gadhave + - Carolina Nobre + - '**Alexander Lex**' + - Lane Harrison + publisher: Preprint + date: '2023-08-17' + link: https://doi.org/10.31219/osf.io/hdzyv + type: preprint + year: 2023 +- id: doi:10.22541/au.169200726.60726072/v1 + title: Reconstructing mountain goat history in the Olympic Mountains, USA, reveals + relative contributions of reproductive rate, juvenile mortality, and adult female + mortality on population growth + authors: + - Oscarson M + - '**Landguth E**' + - Wallin D + publisher: '' + date: '2023-08-14' + link: https://doi.org/10.22541/au.169200726.60726072/v1 + type: paper + year: 2023 +- id: doi:10.1111/jrh.12789 + title: The association of alcohol use and heavy drinking with subsequent handgun + carrying among youth from rural areas. + authors: + - Ellyson AM + - Schleimer JP + - Dalve K + - Gause E + - '**Weybright EH**' + - Kuklinski MR + - Oesterle S + - Rowhani-Rahbar A + publisher: 'The Journal of rural health : official journal of the American Rural + Health Association and the National Rural Health Care Association' + date: '2023-08-03' + link: https://doi.org/10.1111/jrh.12789 + type: paper + year: 2023 +- id: doi:10.2217/pgs-2023-0095 + title: Cost-effectiveness of HLA-B*58:01 testing to prevent Stevens-Johnson + syndrome/toxic epidermal necrolysis in Vietnam. + authors: + - '**Duong KN**' + - Nguyen DV + - '**Chaiyakunapruk N**' + - '**Nelson RE**' + - Malone DC + publisher: Pharmacogenomics + date: '2023-08-01' + link: https://doi.org/10.2217/pgs-2023-0095 + type: paper + year: 2023 +- id: doi:10.1016/j.jamda.2023.06.030 + title: Cost and Utilization Outcomes in Huntsman at Home, a Novel Oncology Hospital + at Home Program. + authors: + - Brock O'Neil + - Kassandra Dindinger-Hill + - Hailie Gill + - Lorinda Coombs + - Benjamin Haaland + - Jian Ying + - '**Richard E Nelson**' + - Jordan McPherson + - Anne C Kirchhoff + - Cornelia M Ulrich + - Jared Huber + - Anna Beck + - Kathi Mooney + publisher: Journal of the American Medical Directors Association + date: '2023-08-01' + link: https://doi.org/10.1016/j.jamda.2023.06.030 + type: paper + year: 2023 +- id: doi:10.1111/ecog.06566 + title: 'CDMetaPOP 2: a multispecies, eco‐evolutionary simulation framework for landscape + demogenetics and connectivity' + authors: + - Casey C. Day + - '**Erin L. Landguth**' + - Ryan K. Simmons + - Andrew R. Bearlin + publisher: Ecography + date: '2023-08-01' + link: https://doi.org/10.1111/ecog.06566 + type: paper + year: 2023 +- id: doi:10.1093/cid/ciad115 + title: 'Condition-Dependent and Dynamic Impacts of Indoor Masking Policies for Coronavirus + Disease 2019 Mitigation: A Nationwide, Interrupted Time-Series Analysis.' + authors: + - Zeynep Ertem + - '**Richard E Nelson**' + - Elissa M Schechter-Perkins + - Amera Al-Amery + - Xilin Zhang + - Westyn Branch-Elliman + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2023-07-26' + link: https://doi.org/10.1093/cid/ciad115 + type: paper + year: 2023 +- id: doi:10.2196/preprints.50985 + title: 'Economic Burden of Mosquito-Borne Diseases in Low- and Middle-Income Countries: + Protocol for a Systematic Review (Preprint)' + authors: + - Nagavalli Chilakam + - Varsha Lakshminarayanan + - Sushanth Keremutt + - Ambigai Rajendran + - Girish Thunga + - Pooja Gopal Poojari + - '**Muhammed Rashid**' + - Nirmalya Mukherjee + - Paramita Bhattacharya + - Denny John + publisher: Preprint + date: '2023-07-24' + link: https://doi.org/10.2196/preprints.50985 + type: preprint + year: 2023 +- id: doi:10.1007/s40823-023-00089-8 + title: Individual-Based Models for Incorporating Landscape Processes in the Conservation + and Management of Aquatic Systems + authors: + - Travis Seaborn + - Casey C. Day + - Stephanie J. Galla + - Tomas O. Höök + - Elizabeth Jossie + - '**Erin L. Landguth**' + - Rongsong Liu + - Ryan K. Simmons + publisher: Current Landscape Ecology Reports + date: '2023-07-22' + link: https://doi.org/10.1007/s40823-023-00089-8 + type: paper + year: 2023 +- id: doi:10.7717/peerj.15247 + title: Sex difference in the discordance between Abbott Architect and EuroImmun + serological assays. + authors: + - Joel D Hartsell + - Daniel T Leung + - Yue Zhang + - Julio C Delgado + - Stephen C Alder + - '**Matthew H Samore**' + publisher: PeerJ + date: '2023-07-17' + link: https://doi.org/10.7717/peerj.15247 + type: paper + year: 2023 +- id: doi:10.1097/inf.0000000000004032 + title: 'Economic and Clinical Outcomes of Pediatric Patients Under Two With Respiratory + Syncytial Virus Infection in Thailand: A Real-world Retrospective Cohort Study.' + authors: + - Tan CJ + - Patikorn C + - Techasaensiri C + - Pattanaprateep O + - '**Chaiyakunapruk N**' + publisher: The Pediatric infectious disease journal + date: '2023-07-04' + link: https://doi.org/10.1097/inf.0000000000004032 + type: paper + year: 2023 +- id: doi:10.3389/fgwh.2023.1180383 + title: 'Health-related quality of life in breast cancer patients in low-and-middle-income + countries in Asia: a systematic review.' + authors: + - Ngo NTN + - Nguyen HT + - Nguyen PTL + - Vo TTT + - Phung TL + - Pham AG + - Vo TV + - Dang MTN + - Nguyen Le Bao T + - '**Duong KNC**' + publisher: Frontiers in global women's health + date: '2023-06-14' + link: https://doi.org/10.3389/fgwh.2023.1180383 + type: paper + year: 2023 +- id: doi:10.1016/j.xfre.2023.06.001 + title: 'Preimplantation genetic testing for sickle cell disease: a cost-effectiveness + analysis.' + authors: + - Joshua C Combs + - Maura Dougherty + - Meghan U Yamasaki + - Alan H DeCherney + - Kate M Devine + - Micah J Hill + - Erin Rothwell + - Jeanne E O'Brien + - '**Richard E Nelson**' + publisher: F&S reports + date: '2023-06-13' + link: https://doi.org/10.1016/j.xfre.2023.06.001 + type: paper + year: 2023 +- id: doi:10.1016/j.jflm.2023.102548 + title: 'The significance of APACHE II as a predictor of mortality in paraquat poisoning: + A systematic review and meta-analysis.' + authors: + - Kaur H + - Chandran VP + - '**Rashid M**' + - Kunhikatta V + - Poojari PG + - Bakkannavar SM + - Balakrishnan JM + - Thunga G + publisher: Journal of forensic and legal medicine + date: '2023-06-04' + link: https://doi.org/10.1016/j.jflm.2023.102548 + type: paper + year: 2023 +- id: doi:10.1016/j.dsx.2023.102790 + title: 'Factors contributing to the adverse drug reactions associated with the dipeptidyl + peptidase-4 (DPP-4) inhibitors: A scoping review.' + authors: + - Reghunath SR + - '**Rashid M**' + - Chandran VP + - Thunga G + - Shivashankar KN + - Acharya LD + publisher: Diabetes & metabolic syndrome + date: '2023-06-03' + link: https://doi.org/10.1016/j.dsx.2023.102790 + type: paper + year: 2023 +- id: doi:10.1016/j.sleh.2023.04.002 + title: 'What a difference a year makes: Objective rest/activity patterns, circadian + phase markers, and sleep quality before and during the COVID-19 pandemic.' + authors: + - Juan Esquivel-Mendoza + - Helen J Burgess + - Lisa H Gren + - '**Kimberley Shoaf**' + - Kelly G Baron + publisher: Sleep health + date: '2023-06-01' + link: https://doi.org/10.1016/j.sleh.2023.04.002 + type: paper + year: 2023 +- id: doi:10.1111/cgf.14822 + title: 'Ferret: Reviewing Tabular Datasets for Manipulation' + authors: + - Devin Lange + - Shaurya Sahai + - Jeff M. Phillips + - '**Alexander Lex**' + publisher: Computer Graphics Forum + date: '2023-06-01' + link: https://doi.org/10.1111/cgf.14822 + type: paper + year: 2023 +- id: doi:10.1093/jhered/esac067 + title: Evolutionary potential mitigates extinction risk under climate change in + the endangered southwestern willow flycatcher. + authors: + - Forester BR + - Day CC + - Ruegg K + - '**Landguth EL**' + publisher: The Journal of heredity + date: '2023-06-01' + link: https://doi.org/10.1093/jhered/esac067 + type: paper + year: 2023 +- id: doi:10.1186/s13063-023-07379-w + title: 'Hyperhydration to Improve Kidney Outcomes in Children with Shiga Toxin-Producing + E. coli Infection: a multinational embedded cluster crossover randomized trial + (the HIKO STEC trial).' + authors: + - Stephen B Freedman + - David Schnadower + - Myka Estes + - T Charles Casper + - Stuart L Goldstein + - Silviu Grisaru + - '**Andrew T Pavia**' + - Benjamin S Wilfond + - Melissa Metheney + - Kadyn Kimball + - Phillip I Tarr + - Hyperhydration to Improve Kidney Outcomes in children with Shiga Toxin-producing + E. Coli infection (HIKO-STEC) Study Te… + publisher: Trials + date: '2023-05-27' + link: https://doi.org/10.1186/s13063-023-07379-w + type: paper + year: 2023 +- id: doi:10.1002/pbc.30420 + title: Child and family perceptions of satisfaction with neutropenia management + in pediatric acute myeloid leukemia. + authors: + - '**Julia E Szymczak**' + - Kelly D Getz + - Rachel Madding + - Sydney Shuster + - Catherine Aftandilian + - Staci D Arnold + - Anderson B Collier + - Maria M Gramatges + - Meret Henry + - Nobuko Hijiya + - Amir Mian + - Elizabeth Raetz + - Brian T Fisher + - Richard Aplenc + publisher: Pediatric blood & cancer + date: '2023-05-17' + link: https://doi.org/10.1002/pbc.30420 + type: paper + year: 2023 +- id: doi:10.1101/2023.05.10.23289580 + title: Characterizing spatiotemporal variation in transmission heterogeneity during + the 2022 mpox outbreak in the USA + authors: + - Love J + - LaPrete CR + - Sheets TR + - '**Vega Yon GG**' + - Thomas A + - Samore MH + - Keegan LT + - Adler FR + - Slayton RB + - Spicknall IH + - Toth DJ + publisher: medRxiv + date: '2023-05-14' + link: https://doi.org/10.1101/2023.05.10.23289580 + type: preprint + year: 2023 + group: featured + image: images/mpox.png +- id: doi:10.1016/j.clinpr.2023.100230 + title: Treatment of COVID-19 symptoms with over the counter (OTC) medicines used + for treatment of common cold and flu. + authors: + - Ronald Eccles + - Guy Boivin + - Benjamin J Cowling + - '**Andrew Pavia**' + - Rangaraj Selvarangan + publisher: Clinical infection in practice + date: '2023-05-06' + link: https://doi.org/10.1016/j.clinpr.2023.100230 + type: paper + year: 2023 +- id: doi:10.1016/j.cegh.2023.101280 + title: 'Teaching and learning strategies of evidence based medicine: A meta-synthesis + of learners and instructors perspective' + authors: + - Viji Pulikkel Chandran + - Athira Balakrishnan + - '**Muhammed Rashid**' + - Sohil Khan + - Elsa Sanatombi Devi + - Girish Pai Kulyadi + - Sreedharan Nair + - Girish Thunga + publisher: Clinical Epidemiology and Global Health + date: '2023-05-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85151780605&partnerID=MN8TOARS + type: paper + year: 2023 +- id: doi:10.1001/jamanetworkopen.2023.13011 + title: Implementation of an Antibiotic Stewardship Initiative in a Large Urgent + Care Network. + authors: + - Edward Stenehjem + - Anthony Wallin + - Park Willis + - Naresh Kumar + - Allan M Seibert + - Whitney R Buckel + - Valoree Stanfield + - Kimberly D Brunisholz + - Nora Fino + - '**Matthew H Samore**' + - Rajendu Srivastava + - Lauri A Hicks + - Adam L Hersh + publisher: JAMA network open + date: '2023-05-01' + link: https://doi.org/10.1001/jamanetworkopen.2023.13011 + type: paper + year: 2023 +- id: doi:10.1111/1755-0998.13799 + title: Simulating plasticity as a framework for understanding habitat selection + and its role in adaptive capacity and extinction risk through an expansion of + CDMetaPOP. + authors: + - Seaborn T + - '**Landguth EL**' + - Caudill CC + publisher: Molecular ecology resources + date: '2023-04-20' + link: https://doi.org/10.1111/1755-0998.13799 + type: paper + year: 2023 +- id: doi:10.1145/3544548.3581168 + title: 'Troubling Collaboration: Matters of Care for Visualization Design Study' + authors: + - Derya Akbaba + - Devin Lange + - Michael Correll + - '**Alexander Lex**' + - Miriah Meyer + publisher: Proceedings of the 2023 CHI Conference on Human Factors in Computing + Systems + date: '2023-04-19' + link: https://doi.org/10.1145/3544548.3581168 + type: paper + year: 2023 +- id: doi:10.1145/3544548.3580910 + title: 'Misleading Beyond Visual Tricks: How People Actually Lie with Charts' + authors: + - Maxim Lisnic + - Cole Polychronis + - '**Alexander Lex**' + - Marina Kogan + publisher: Proceedings of the 2023 CHI Conference on Human Factors in Computing + Systems + date: '2023-04-19' + link: https://doi.org/10.1145/3544548.3580910 + type: paper + year: 2023 +- id: doi:10.1002/jhm.13101 + title: 'Antibiotic clinical decision support for pneumonia in the ED: A randomized + trial.' + authors: + - Derek J Williams + - Judith M Martin + - Hui Nian + - Asli O Weitkamp + - Jason Slagle + - Robert W Turer + - Srinivasan Suresh + - Jakobi Johnson + - Justine Stassun + - Shari L Just + - Carrie Reale + - Russ Beebe + - Donald H Arnold + - James W Antoon + - Nancy S Rixe + - Laura F Sartori + - Robert E Freundlich + - Krow Ampofo + - '**Andrew T Pavia**' + - Joshua C Smith + - Matthew B Weinger + - Yuwei Zhu + - Carlos G Grijalva + publisher: Journal of hospital medicine + date: '2023-04-12' + link: https://doi.org/10.1002/jhm.13101 + type: paper + year: 2023 +- id: doi:10.1002/ece3.9965 + title: Evaluating the evolutionary mechanisms maintaining alternative mating strategies + in a simulated bull trout ( Salvelinus confluentus ) population. + authors: + - Bernos TA + - Chang SL + - Giglio RM + - Davenport K + - Fisher J + - Lowery E + - Bearlin A + - Simmons R + - Fortin MJ + - Day CC + - '**Landguth EL**' + publisher: Ecology and evolution + date: '2023-04-07' + link: https://doi.org/10.1002/ece3.9965 + type: paper + year: 2023 +- id: doi:10.1016/j.vaccine.2023.03.072 + title: Evaluation of mortality risk after COVID-19 vaccination, Utah 2021. + authors: + - Jessica R Payne + - Srimoyee Bose + - Rachel W Kubiak + - '**Leisha D Nolen**' + publisher: Vaccine + date: '2023-04-05' + link: https://doi.org/10.1016/j.vaccine.2023.03.072 + type: paper + year: 2023 +- id: doi:10.18332/tid/161024 + title: Cost-effectiveness analysis of the SMART quit clinic program in smokers with + cardiovascular disease in Thailand. + authors: + - Grant A + - Tan CJ + - Wattanasirichaigoon S + - Rungruanghiranya S + - Thongphiew A + - Thavorn K + - '**Chaiyakunapruk N**' + publisher: Tobacco induced diseases + date: '2023-04-05' + link: https://doi.org/10.18332/tid/161024 + type: paper + year: 2023 +- id: doi:10.1111/add.16187 + title: 'Comparative effectiveness of psychosocial interventions in adults with harmful + use of alcohol: a systematic review and network meta-analysis.' + authors: + - Tan CJ + - Shufelt T + - Behan E + - Chantara J + - Koomsri C + - Gordon AJ + - '**Chaiyakunapruk N**' + - Dhippayom T + publisher: Addiction (Abingdon, England) + date: '2023-04-04' + link: https://doi.org/10.1111/add.16187 + type: paper + year: 2023 +- id: doi:10.1109/pacificvis56936.2023.00012 + title: Visualizing Interaction Networks and Evidence in Biomedical Corpora + authors: + - Enrique Noriega-Atala + - Md. Rahat-Uz-Zaman + - Ruchika Bhat + - Mladen Jergovic + - Stephen G. Kobourov + - Janko Nikolich-Zugich + publisher: 2023 IEEE 16th Pacific Visualization Symposium (PacificVis) + date: '2023-04-01' + link: http://dx.doi.org/10.1109/pacificvis56936.2023.00012 + type: paper + year: 2023 +- id: doi:10.1111/acem.14655 + title: 'Hospital admission decisions for older Veterans with community-onset pneumonia: + An analysis of 118 U.S. Veterans Affairs Medical Centers.' + authors: + - Barbara E Jones + - Jian Ying + - McKenna Nevers + - Elizabeth D Rutter + - Alec B Chapman + - Rachel Brenner + - '**Matthew H Samore**' + - Tom Greene + publisher: 'Academic emergency medicine : official journal of the Society for Academic + Emergency Medicine' + date: '2023-04-01' + link: https://doi.org/10.1111/acem.14655 + type: paper + year: 2023 +- id: doi:10.1136/bmjdrc-2022-003211 + title: Association of hemoglobin A1c stability with mortality and diabetes complications + in older adults with diabetes. + authors: + - Paul R Conlin + - Libin Zhang + - Donglin Li + - '**Richard E Nelson**' + - Julia C Prentice + - David C Mohr + publisher: BMJ open diabetes research & care + date: '2023-04-01' + link: https://doi.org/10.1136/bmjdrc-2022-003211 + type: paper + year: 2023 +- id: doi:10.1017/ice.2023.35 + title: A qualitative evaluation of frontline clinician perspectives toward antibiotic + stewardship programs. + authors: + - Maria Tjilos + - Mari-Lynn Drainoni + - Shana A B Burrowes + - Jorie M Butler + - Laura J Damschroder + - Matthew Bidwell Goetz + - Karl Madaras-Kelly + - Caitlin M Reardon + - '**Matthew H Samore**' + - Jincheng Shen + - Edward A Stenehjem + - Yue Zhang + - Tamar F Barlam + publisher: Infection control and hospital epidemiology + date: '2023-03-29' + link: https://doi.org/10.1017/ice.2023.35 + type: paper + year: 2023 +- id: doi:10.1016/j.jamda.2023.02.018 + title: 'Assessing Pathogen Transmission Opportunities: Variation in Nursing Home + Staff-Resident Interactions.' + authors: + - Nai-Chung Nelson Chang + - Molly Leecaster + - Scott Fridkin + - Will Dube + - Morgan Katz + - Philip Polgreen + - Mary-Claire Roghmann + - '**Karim Khader**' + - Linda Li + - Ghinwa Dumyati + - Rebecca Tsay + - Ruth Lynfield + - J P Mahoehney + - Joelle Nadle + - Jeré Hutson + - Rebecca Pierce + - Alexia Zhang + - Christopher Wilson + - Candace Haroldsen + - Diane Mulvey + - Sujan C Reddy + - Nimalie D Stone + - Rachel B Slayton + - Nicola D Thompson + - Kristina Stratford + - Matthew Samore + - Lindsay D Visnovsky + publisher: Journal of the American Medical Directors Association + date: '2023-03-27' + link: https://doi.org/10.1016/j.jamda.2023.02.018 + type: paper + year: 2023 +- id: doi:10.1017/ice.2022.302 + title: 'Electronic surveillance criteria for non-ventilator-associated hospital-acquired + pneumonia: Assessment of reliability and validity.' + authors: + - Sarah E Stern + - Matthew A Christensen + - McKenna R Nevers + - Jian Ying + - Caroline McKenna + - Shannon Munro + - Chanu Rhee + - '**Matthew H Samore**' + - Michael Klompas + - Barbara E Jones + publisher: Infection control and hospital epidemiology + date: '2023-03-15' + link: https://doi.org/10.1017/ice.2022.302 + type: paper + year: 2023 +- id: doi:10.3390/vaccines11030622 + title: 'Equity-Informative Economic Evaluations of Vaccines: A Systematic Literature + Review.' + authors: + - Patikorn C + - Cho JY + - Lambach P + - Hutubessy R + - '**Chaiyakunapruk N**' + publisher: Vaccines + date: '2023-03-09' + link: https://doi.org/10.3390/vaccines11030622 + type: paper + year: 2023 +- id: doi:10.1080/21645515.2023.2177459 + title: 'Implementation challenges and real-world impacts of switching pediatric + vaccines: A global systematic literature review.' + authors: + - Patikorn C + - Kategeaw W + - Perdrizet J + - Li X + - '**Chaiyakunapruk N**' + publisher: Human vaccines & immunotherapeutics + date: '2023-03-07' + link: https://doi.org/10.1080/21645515.2023.2177459 + type: paper + year: 2023 +- id: doi:10.3390/v15030691 + title: Key Factors and Parameter Ranges for Immune Control of Equine Infectious + Anemia Virus Infection. + authors: + - Hull-Nye D + - Meadows T + - Smith SR + - '**Schwartz EJ**' + publisher: Viruses + date: '2023-03-06' + link: https://doi.org/10.3390/v15030691 + type: paper + year: 2023 +- id: doi:10.1016/j.ahj.2023.02.014 + title: 'A randomized controlled trial of gamification, financial incentives, or + both to increase physical activity among patients with elevated risk for cardiovascular + disease: rationale and design of the be active study.' + authors: + - Alexander C Fanaroff + - Mitesh S Patel + - Neel Chokshi + - Samantha Coratti + - David Farraday + - Laurie Norton + - Charles Rareshide + - Jingsan Zhu + - '**Julia E Szymczak**' + - Louise B Russell + - Dylan S Small + - Kevin G M Volpp + publisher: American heart journal + date: '2023-03-02' + link: https://doi.org/10.1016/j.ahj.2023.02.014 + type: paper + year: 2023 +- id: doi:10.1162/rest_a_01302 + title: What Is the Active Prevalence of COVID-19? + authors: + - Mu-Jeung Yang + - Marinho Bertanha + - '**Nathan Seegert**' + - Maclean Gaulin + - Adam Looney + - Brian Orleans + - Andrew T. Pavia + - Kristina Stratford + - Matthew Samore + - Steven Alder + publisher: The Review of Economics and Statistics + date: '2023-03-01' + link: https://doi.org/10.1162/rest\_a\_01302 + type: paper + year: 2023 +- id: doi:10.1128/jcm.01652-22 + title: Impact of Rapid Molecular Multiplex Gastrointestinal Pathogen Testing in + Management of Children during a Shigella Outbreak. + authors: + - N Kanwar + - J Jackson + - T Bardsley + - '**A Pavia**' + - K M Bourzac + - K Holmberg + - R Selvarangan + publisher: Journal of clinical microbiology + date: '2023-02-28' + link: https://doi.org/10.1128/jcm.01652-22 + type: paper + year: 2023 +- id: doi:10.1177/00333549231152198 + title: Investigation of SARS-CoV-2 Transmission in The Tabernacle Choir at Temple + Square in the Context of Prevention Protocols, Utah, September-November 2021. + authors: + - William A Lanier + - David K Palmer + - D Keith Willmore + - Kelly F Oakeson + - Erin L Young + - '**Leisha D Nolen**' + publisher: 'Public health reports (Washington, D.C. : 1974)' + date: '2023-02-03' + link: https://doi.org/10.1177/00333549231152198 + type: paper + year: 2023 +- id: doi:10.1007/s40256-023-00570-z + title: Integrating Real-World Evidence in Economic Evaluation of Oral Anticoagulants + for Stroke Prevention in Non-valvular Atrial Fibrillation in a Developing Country. + authors: + - M Sakil Syeed + - Teerawat Nonthasawadsri + - '**Richard E Nelson**' + - Nathorn Chaiyakunapruk + - Surakit Nathisuwan + publisher: 'American journal of cardiovascular drugs : drugs, devices, and other + interventions' + date: '2023-02-03' + link: https://doi.org/10.1007/s40256-023-00570-z + type: paper + year: 2023 +- id: doi:10.1016/j.jpeds.2023.01.010 + title: Association of Radiology Findings with Etiology of Community Acquired Pneumonia + among Children. + authors: + - Sandra R Arnold + - Seema Jain + - David Dansie + - Herman Kan + - Derek J Williams + - Krow Ampofo + - Evan J Anderson + - Carlos G Grijalva + - Anna M Bramley + - '**Andrew T Pavia**' + - Kathryn M Edwards + - Vikki G Nolan + - Jonathan A McCullers + - Robert A Kaufman + publisher: The Journal of pediatrics + date: '2023-02-02' + link: https://doi.org/10.1016/j.jpeds.2023.01.010 + type: paper + year: 2023 +- id: doi:10.18553/jmcp.2023.29.2.139 + title: Understanding patient cost-sharing thresholds for diabetes treatment attributes + via a discrete choice experiment. + authors: + - Panchal R + - '**Nguyen D**' + - Ghule P + - Li N + - Giannouchos T + - Pan RJ + - Biskupiak J + - Britton L + - Nohavec R + - Slager S + - Ngorsuraches S + - Brixner D + publisher: Journal of managed care & specialty pharmacy + date: '2023-02-01' + link: https://doi.org/10.18553/jmcp.2023.29.2.139 + type: paper + year: 2023 +- id: doi:10.1093/aje/kwac201 + title: Are Staphylococcus aureus Carrier Types Evidence of Population Heterogeneity? + authors: + - Beams A + - '**Keegan LT**' + - Adler FR + - Samore MH + - Khader K + - Toth DJA + publisher: American journal of epidemiology + date: '2023-02-01' + link: https://doi.org/10.1093/aje/kwac201 + type: paper + year: 2023 +- id: doi:10.1016/j.cegh.2023.101243 + title: 'Impact of COVID-19 pandemic on medicine supply chain for patients with chronic + diseases: Experiences of the community pharmacists.' + authors: + - Ramakrishnan M + - Poojari PG + - '**Rashid M**' + - Nair S + - Pulikkel Chandran V + - Thunga G + publisher: Clinical epidemiology and global health + date: '2023-01-27' + link: https://doi.org/10.1016/j.cegh.2023.101243 + type: paper + year: 2023 +- id: doi:10.3389/fmed.2023.1016381 + title: 'Comparison of diagnostic accuracy for diabetes diagnosis: A systematic review + and network meta-analysis.' + authors: + - '**Duong KNC**' + - Tan CJ + - Rattanasiri S + - Thakkinstian A + - Anothaisintawee T + - Chaiyakunapruk N + publisher: Frontiers in medicine + date: '2023-01-24' + link: https://doi.org/10.3389/fmed.2023.1016381 + type: paper + year: 2023 +- id: doi:10.3390/electronics12020472 + title: Handwritten Numeral Recognition Integrating Start–End Points Measure with + Convolutional Neural Network + authors: + - M. A. H. Akhand + - '**Md. Rahat-Uz-Zaman**' + - Shadmaan Hye + - Md Abdus Samad Kamal + publisher: Electronics + date: '2023-01-16' + link: https://doi.org/10.3390/electronics12020472 + type: paper + year: 2023 +- id: doi:10.1200/op.22.00447 + title: 'Cost-Effectiveness Analysis of Six Immunotherapy-Based Regimens and Sunitinib + in Metastatic Renal Cell Carcinoma: A Public Payer Perspective.' + authors: + - Minkyoung Yoo + - '**Richard E Nelson**' + - Zachary Cutshall + - Maura Dougherty + - Manish Kohli + publisher: JCO oncology practice + date: '2023-01-04' + link: https://doi.org/10.1200/op.22.00447 + type: paper + year: 2023 +- id: doi:10.2174/1573399818666220224123525 + title: 'Impact of Diabetes in COVID-19 Associated Mucormycosis and its Management: + A Non-Systematic Literature Review.' + authors: + - '**Rashid M**' + - Rajan AK + - Thunga G + - Shanbhag V + - Nair S + publisher: Current diabetes reviews + date: '2023-01-01' + link: https://doi.org/10.2174/1573399818666220224123525 + type: paper + year: 2023 +- id: doi:10.1016/b978-0-443-15688-5.00029-2 + title: Artificial intelligence in neglected tropical diseases + authors: + - Girish Thunga + - Sohil Khan + - Pooja Gopal Poojari + - Asha K. Rajan + - '**Muhammed Rashid**' + - Harsimran Kaur + - Viji Pulikkel Chandran + publisher: Artificial Intelligence in Clinical Practice how AI Technologies Impact + Medical Research and Clinics + date: '2023-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85176817629&partnerID=MN8TOARS + type: paper + year: 2023 +- id: doi:10.1080/13696998.2022.2066441 + title: 'Methodological similarities and variations among EQ-5D-5L value set studies: + a systematic review' + authors: + - N Poudel + - S M Fahim + - J Qian + - K Garza + - '**N Chaiyakunapruk**' + - S Ngorsuraches + publisher: Journal of Medical Economics + date: '2022-12-30' + link: https://doi.org/10.1080/13696998.2022.2066441 + type: paper + year: 2022 +- id: doi:10.1080/13696998.2022.2143170 + title: 'Measurement and valuation of the attributes of innovation of healthcare + technologies: a systematic review.' + authors: + - Syeed MS + - Poudel N + - Ngorsuraches S + - Diaz J + - '**Chaiyakunapruk N**' + publisher: Journal of medical economics + date: '2022-12-30' + link: https://doi.org/10.1080/13696998.2022.2143170 + type: paper + year: 2022 +- id: doi:10.1080/13696998.2021.2008195 + title: 'Incremental net monetary benefit of herpes zoster vaccination: a systematic + review and meta-analysis of cost-effectiveness evidence' + authors: + - Sariya Udayachalerm + - Maranda G Renouard + - Thunyarat Anothaisintawee + - Ammarin Thakkinstian + - Sajesh K Veettil + - '**Nathorn Chaiyakunapruk**' + publisher: Journal of Medical Economics + date: '2022-12-30' + link: https://doi.org/10.1080/13696998.2021.2008195 + type: paper + year: 2022 +- id: doi:10.1080/13696998.2022.2087960 + title: 'Global article collection: essential reads from around the world' + authors: + - Mihajlo Jakovljevic + - Chia Jie Tan + - '**Nathorn Chaiyakunapruk**' + - Guilherme Silva Julian + - Kei Long Cheung + - Mickael Hiligsmann + - Brian Godman + - Sylvia Opanga + - Paul A Scuffham + - Michael Gregg + publisher: Journal of Medical Economics + date: '2022-12-30' + link: https://doi.org/10.1080/13696998.2022.2087960 + type: paper + year: 2022 +- id: doi:10.1145/3564593 + title: 'Direction-optimizing Label Propagation Framework for Structure Detection + in Graphs: Design, Implementation, and Experimental Analysis' + authors: + - Xu Liu + - Andrew Lumsdaine + - Mahantesh Halappanavar + - Kevin Barker + - '**Assefaw Gebremedhin**' + publisher: ACM Journal of Experimental Algorithmics + date: '2022-12-30' + link: https://doi.org/10.1145/3564593 + type: paper + year: 2022 +- id: doi:10.1080/13696998.2022.2140591 + title: 'Characterizing attributes of innovation of technologies for healthcare: + a systematic review.' + authors: + - Syeed MS + - Poudel N + - Ngorsuraches S + - Veettil SK + - '**Chaiyakunapruk N**' + publisher: Journal of medical economics + date: '2022-12-30' + link: https://doi.org/10.1080/13696998.2022.2140591 + type: paper + year: 2022 +- id: doi:10.1016/j.evalprogplan.2022.102223 + title: Predictors of homeless service utilization and stable housing status among + Veterans receiving services from a nationwide homelessness prevention and rapid + rehousing program. + authors: + - Thomas Byrne + - Ann Elizabeth Montgomery + - Alec B Chapman + - Warren Pettey + - Atim Effiong + - Ying Suo + - Tania Velasquez + - '**Richard E Nelson**' + publisher: Evaluation and program planning + date: '2022-12-26' + link: https://doi.org/10.1016/j.evalprogplan.2022.102223 + type: paper + year: 2022 +- id: doi:10.26719/emhj.22.090 + title: Systematic review and meta-analysis of global prevalence of neurotoxic and + hemotoxic snakebite envenomation. + authors: + - Suhita R + - Begum I + - '**Rashid M**' + - Chandran VP + - Shastri SA + - Kantamneni R + - Rajan AK + - Thunga G + publisher: Eastern Mediterranean health journal = La revue de sante de la Mediterranee + orientale = al-Majallah al-sihhiyah li-sharq al-mutawassit + date: '2022-12-21' + link: https://doi.org/10.26719/emhj.22.090 + type: paper + year: 2022 +- id: doi:10.1109/icece57408.2022.10088628 + title: Start-End Writing Integration with Convolutional Neural Network for Bengali + Handwritten Numeral Recognition + authors: + - Md. Rahat-Uz-Zaman + - Shadmaan Hye + - M. A. H. Akhand + publisher: 2022 12th International Conference on Electrical and Computer Engineering + (ICECE) + date: '2022-12-21' + link: https://doi.org/10.1109/icece57408.2022.10088628 + type: paper + year: 2022 +- id: doi:10.1002/phar.2747 + title: Examining the clinical impact of rapid multiplex polymerase chain reaction-based + diagnostic testing for bloodstream infections in a national cohort of the Veterans + Health Administration. + authors: + - Nicholas S Britt + - '**Karim Khader**' + - Tao He + - Tina M Willson + - Atim Effiong + - Tristan T Timbrook + - Emily M Potter + - Thomas P Lodise + publisher: Pharmacotherapy + date: '2022-12-21' + link: https://doi.org/10.1002/phar.2747 + type: paper + year: 2022 +- id: doi:10.1109/tvcg.2022.3209451 + title: 'Data Hunches: Incorporating Personal Knowledge into Visualizations.' + authors: + - Lin H + - Akbaba D + - Meyer M + - '**Lex A**' + publisher: IEEE transactions on visualization and computer graphics + date: '2022-12-20' + link: https://doi.org/10.1109/tvcg.2022.3209451 + type: paper + year: 2022 +- id: doi:10.1111/jebm.12511 + title: Characterizing health services interventions for evidence syntheses by using + the theme, intensity, provider/platform (TIP) framework. + authors: + - Dhippayom T + - Saldanha IJ + - '**Chaiyakunapruk N**' + - Devine B + publisher: Journal of evidence-based medicine + date: '2022-12-18' + link: https://doi.org/10.1111/jebm.12511 + type: paper + year: 2022 +- id: doi:10.1016/j.idm.2022.12.002 + title: Revisiting classical SIR modelling in light of the COVID-19 pandemic. + authors: + - Kalachev L + - '**Landguth EL**' + - Graham J + publisher: Infectious Disease Modelling + date: '2022-12-16' + link: https://doi.org/10.1016/j.idm.2022.12.002 + type: paper + year: 2022 +- id: doi:10.1093/ofid/ofac492.507 + title: 432. Ward-level Variation in Transmission of MRSA in Veterans Affairs Hospitals + authors: + - Karim Khader + - Vanessa W Stevens + - Alun Thomas + - Damon Toth + - '**Lindsay T Keegan**' + - Michael Rubin + - Matthew H Samore + publisher: Open Forum Infectious Diseases + date: '2022-12-15' + link: http://dx.doi.org/10.1093/ofid/ofac492.507 + type: paper + year: 2022 +- id: doi:10.1017/ice.2022.281 + title: Lack of correlation between standardized antimicrobial administration ratios + (SAARs) and healthcare-facility-onset Clostridioides difficile infection rates + in Veterans Affairs medical facilities. + authors: + - Evans ME + - '**Jones MM**' + - Davis KW + - Lane MT + - Simbartl LA + - McCauley BP + - Gauldin N + - Roselle GA + publisher: Infection control and hospital epidemiology + date: '2022-12-01' + link: https://doi.org/10.1017/ice.2022.281 + type: paper + year: 2022 +- id: doi:10.1172/jci166075 + title: 'Doris Duke Charitable Foundation Fund to Retain Clinical Scientists: innovating + support for early-career family caregivers.' + authors: + - Reshma Jagsi + - T DeLene Beeland + - Kevin Sia + - Lauren A Szczygiel + - Matthew R Allen + - Vineet M Arora + - Megan Bair-Merritt + - Melissa D Bauman + - Hillary R Bogner + - Gail Daumit + - Esa Davis + - Angela Fagerlin + - Daniel E Ford + - Rasheed Gbadegesin + - Kathy Griendling + - Katherine Hartmann + - S Susan Hedayati + - Rebecca D Jackson + - Susan Matulevicius + - Michael J Mugavero + - Eric J Nehl + - Tuhina Neogi + - Judith G Regensteiner + - '**Michael A Rubin**' + - Doris Rubio + - Kanakadurga Singer + - Brownsyne Tucker Edmonds + - Anna Volerman + - Sandra Laney + - Carrie Patton + - Sindy Escobar Alvarez + publisher: The Journal of clinical investigation + date: '2022-12-01' + link: https://doi.org/10.1172/jci166075 + type: paper + year: 2022 +- id: doi:10.1049/stg2.12088 + title: 'CP‐SyNet: A tool for generating customised cyber‐power synthetic network + for distribution systems with distributed energy resources' + authors: + - Lusha Wang + - James Halvorsen + - Sanjeev Pannala + - Anurag Srivastava + - '**Assefaw H. Gebremedhin**' + - Noel N. Schulz + publisher: IET Smart Grid + date: '2022-12-01' + link: https://doi.org/10.1049/stg2.12088 + type: paper + year: 2022 +- id: doi:10.1007/s10552-022-01652-0 + title: Contributions of cancer treatment, comorbidities, and obesity to aging-related + disease risks among non-Hodgkin lymphoma survivors. + authors: + - Krista Ocier + - Sarah Abdelaziz + - Seungmin Kim + - Kerry Rowe + - John Snyder + - Vikrant Deshmukh + - Michael Newman + - Alison Fraser + - Ken Smith + - Christy Porucznik + - '**Kimberley Shoaf**' + - Joseph Stanford + - Catherine Lee + - Mia Hashibe + publisher: 'Cancer causes & control : CCC' + date: '2022-11-22' + link: https://doi.org/10.1007/s10552-022-01652-0 + type: paper + year: 2022 +- id: doi:10.3390/ijerph192315487 + title: Conflicting HIV/AIDS Sex Education Policies and Mixed Messaging among Educators + and Students in the Lower Manya Krobo Municipality, Ghana. + authors: + - Benedict Ocran + - Sharon Talboys + - '**Kimberley Shoaf**' + publisher: International journal of environmental research and public health + date: '2022-11-22' + link: https://doi.org/10.3390/ijerph192315487 + type: paper + year: 2022 +- id: doi:10.1001/jamanetworkopen.2022.40142 + title: Revisiting the Question of Fan Attendance at Professional Sporting Events + authors: + - Stephanie S. Johnson + - Eric T. Lofgren + publisher: JAMA Network Open + date: '2022-11-18' + link: https://doi.org/gtszw2 + type: paper + group: featured + image: images/JAMA-network.png + plugin: sources.py + file: sources.yaml +- id: doi:10.1016/j.jhsa.2022.09.002 + title: 'Minimizing Costs for Dorsal Wrist Ganglion Treatment: A Cost-Minimization + Analysis.' + authors: + - Andrew E Federer + - Minkyoung Yoo + - Andrew S Stephens + - '**Richard E Nelson**' + - Jesse N Steadman + - Andrew R Tyser + - Nikolas H Kazmers + publisher: The Journal of hand surgery + date: '2022-11-17' + link: https://doi.org/10.1016/j.jhsa.2022.09.002 + type: paper + year: 2022 +- id: doi:10.1017/s1463423622000548 + title: 'Assessment of the real-world impact of the Thai smoking cessation programme + on clinical outcomes: protocol for a multicentre prospective observational study.' + authors: + - Chaisai C + - '**Chaiyakunapruk N**' + - Thavorn K + - Wattanasirichaigoon S + - Rungruanghiranya S + - Thongphiew A + - Lee SWH + publisher: Primary health care research & development + date: '2022-11-10' + link: https://doi.org/10.1017/s1463423622000548 + type: paper + year: 2022 +- id: doi:10.1080/02614367.2022.2055773 + title: 'College students’ perceptions of healthy and unhealthy leisure: associations + with leisure behaviour' + authors: + - Jennifer P. Agans + - Steven Hanna + - '**Elizabeth H. Weybright**' + - Julie S. Son + publisher: Leisure Studies + date: '2022-11-02' + link: https://doi.org/10.1080/02614367.2022.2055773 + type: paper + year: 2022 +- id: doi:10.48550/arxiv.2211.00627 + title: Discrete Exponential-Family Models for Multivariate Binary Outcomes + authors: + - '**George G. Vega Yon**' + - Mary Jo Pugh + - Thomas W. Valente + publisher: arXiv + date: '2022-11-01' + link: https://www.scopus.com/inward/record.url?eid=2-s2.0-85142197704&partnerID=MN8TOARS + type: preprint + year: 2022 +- id: doi:10.1007/s11606-022-07787-9 + title: A Cluster Randomized Trial of a Family Health History Platform to Identify + and Manage Patients at Increased Risk for Colorectal Cancer. + authors: + - Corrine I Voils + - Cynthia J Coffman + - R Ryanne Wu + - Janet M Grubber + - Deborah A Fisher + - Elizabeth M Strawbridge + - Nina Sperber + - Virginia Wang + - Maren T Scheuner + - Dawn Provenzale + - '**Richard E Nelson**' + - Elizabeth Hauser + - Lori A Orlando + - Karen M Goldstein + publisher: Journal of general internal medicine + date: '2022-10-28' + link: https://doi.org/10.1007/s11606-022-07787-9 + type: paper + year: 2022 +- id: doi:10.15386/mpr-2259 + title: 'Proton pump inhibitors use and risk of inflammatory bowel diseases: a meta-analysis + of observational studies.' + authors: + - Shastri SA + - Kantamneni R + - '**Rashid M**' + - Chandran VP + - Suhita R + - Begum I + - Nair S + - Thunga G + publisher: Medicine and pharmacy reports + date: '2022-10-27' + link: https://doi.org/10.15386/mpr-2259 + type: paper + year: 2022 +- id: doi:10.1093/jacamr/dlac106 + title: Comparative effectiveness of antibiotic therapy for carbapenem-resistant + Enterobacterales (CRE) bloodstream infections in hospitalized US veterans. + authors: + - Wilson GM + - Fitzpatrick MA + - Suda KJ + - Smith BM + - Gonzalez B + - '**Jones M**' + - Schweizer ML + - Evans M + - Evans CT + publisher: JAC-antimicrobial resistance + date: '2022-10-26' + link: https://doi.org/10.1093/jacamr/dlac106 + type: paper + year: 2022 +- id: doi:10.1109/tvcg.2021.3098240 + title: A Survey of Perception-Based Visualization Studies by Task. + authors: + - Quadri GJ + - '**Rosen P**' + publisher: IEEE transactions on visualization and computer graphics + date: '2022-10-26' + link: https://doi.org/10.1109/tvcg.2021.3098240 + type: paper + year: 2022 +- id: doi:10.1017/ash.2022.285 + title: 'Outpatient treatment and clinical outcomes of bacteriuria in veterans: A + retrospective cohort analysis.' + authors: + - Rovelsky SA + - Vu M + - Barrett AK + - Bukowski K + - Wei X + - Burk M + - '**Jones M**' + - Echevarria K + - Suda KJ + - Cunningham F + - Madaras-Kelly KJ + - UTI Management Improvement Group + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2022-10-12' + link: https://doi.org/10.1017/ash.2022.285 + type: paper + year: 2022 +- id: doi:10.1097/mlr.0000000000001785 + title: How Does the Effect of the Comprehensive Care for Joint Replacement Model + Vary Based on Surgical Volume and Costs of Care? + authors: + - Hyunkyu Ko + - Brook I Martin + - '**Richard E Nelson**' + - Christopher E Pelt + publisher: Medical care + date: '2022-10-12' + link: https://doi.org/10.1097/mlr.0000000000001785 + type: paper + year: 2022 +- id: doi:10.1186/s13012-022-01236-1 + title: 'Comparing two implementation strategies for implementing and sustaining + a case management practice serving homeless-experienced veterans: a protocol for + a type 3 hybrid cluster-randomized trial.' + authors: + - Sonya Gabrielian + - Erin P Finley + - David A Ganz + - Jenny M Barnard + - Nicholas J Jackson + - Ann Elizabeth Montgomery + - '**Richard E Nelson**' + - Kristina M Cordasco + publisher: 'Implementation science : IS' + date: '2022-10-03' + link: https://doi.org/10.1186/s13012-022-01236-1 + type: paper + year: 2022 +- id: doi:10.1097/md.0000000000030245 + title: Quantifying the breadth of antibiotic exposure in sepsis and suspected infection + using spectrum scores. + authors: + - Smith JT + - Manickam RN + - Barreda F + - Greene JD + - Bhimarao M + - Pogue J + - '**Jones M**' + - Myers L + - Prescott HC + - Liu VX + publisher: Medicine + date: '2022-10-01' + link: https://doi.org/10.1097/md.0000000000030245 + type: paper + year: 2022 +- id: doi:10.1001/jamapediatrics.2022.2535 + title: 'Improving Antibiotic Stewardship for Diarrheal Disease With Probability-Based + Electronic Clinical Decision Support: A Randomized Crossover Trial.' + authors: + - Eric J Nelson + - Ashraful I Khan + - Adama Mamby Keita + - Ben J Brintz + - Youssouf Keita + - Doh Sanogo + - Md Taufiqul Islam + - Zahid Hasan Khan + - Md Mahbubur Rashid + - Dilruba Nasrin + - Melissa H Watt + - Sharia M Ahmed + - Ben Haaland + - '**Andrew T Pavia**' + - Adam C Levine + - Dennis L Chao + - Karen L Kotloff + - Firdausi Qadri + - Samba O Sow + - Daniel T Leung + publisher: JAMA pediatrics + date: '2022-10-01' + link: https://doi.org/10.1001/jamapediatrics.2022.2535 + type: paper + year: 2022 +- id: doi:10.1037/lhb0000497 + title: 'Criminal legal involvement among recently separated veterans: Findings from + the LIMBIC study.' + authors: + - Elbogen EB + - Amuan M + - Kennedy E + - Blakey SM + - Graziano RC + - Hooshyar D + - Tsai J + - '**Nelson RE**' + - Vanneman ME + - Jones AL + - Pugh MJ + publisher: Law and human behavior + date: '2022-10-01' + link: https://doi.org/10.1037/lhb0000497 + type: paper + year: 2022 +- id: doi:10.1093/cid/ciac074 + title: Clinical Decision Support Systems to Reduce Unnecessary Clostridioides difficile + Testing Across Multiple Hospitals. + authors: + - Clare Rock + - Oluchi Abosi + - Susan Bleasdale + - Erin Colligan + - Daniel J Diekema + - Prashila Dullabh + - Ayse P Gurses + - Krysta Heaney-Huls + - Jesse T Jacob + - Sheetal Kandiah + - Sonam Lama + - Surbhi Leekha + - '**Jeanmarie Mayer**' + - Alfredo J Mena Lora + - Daniel J Morgan + - Patience Osei + - Sara Pau + - Jorge L Salinas + - Emily Spivak + - Eric Wenzler + - Sara E Cosgrove + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2022-09-30' + link: https://doi.org/10.1093/cid/ciac074 + type: paper + year: 2022 +- id: doi:10.1371/journal.pntd.0010775 + title: Estimating economic and disease burden of snakebite in ASEAN countries using + a decision analytic model. + authors: + - Patikorn C + - Blessmann J + - Nwe MT + - Tiglao PJG + - Vasaruchapong T + - Maharani T + - Doan UV + - Zainal Abidin SA + - Ismail AK + - Othman I + - Taychakhoonavudh S + - '**Chaiyakunapruk N**' + publisher: PLoS neglected tropical diseases + date: '2022-09-28' + link: https://doi.org/10.1371/journal.pntd.0010775 + type: paper + year: 2022 +- id: doi:10.1016/j.seizure.2022.09.011 + title: 'Role of human leukocyte antigen in anti-epileptic drugs-induced Stevens-Johnson + Syndrome/toxic epidermal necrolysis: A meta-analysis.' + authors: + - '**Rashid M**' + - Rajan AK + - Chhabra M + - Kashyap A + - Chandran VP + - Venkataraman R + - Nair S + - Thunga G + publisher: Seizure + date: '2022-09-17' + link: https://doi.org/10.1016/j.seizure.2022.09.011 + type: paper + year: 2022 +- id: doi:10.31219/osf.io/e5vfy + title: A Qualitative Evaluation and Taxonomy of Student Annotations on Bar Charts + authors: + - Dilshadur Rahman + - Ghulam Jilani Quadri + - '**Paul Rosen**' + publisher: Preprint + date: '2022-09-12' + link: https://doi.org/10.31219/osf.io/e5vfy + type: preprint + year: 2022 +- id: doi:10.1093/ofid/ofac456 + title: Infectious Disease Consults of Pseudomonas aeruginosa Bloodstream Infection + and Impact on Health Outcomes. + authors: + - Ramanathan S + - Albarillo FS + - Fitzpatrick MA + - Suda KJ + - Poggensee L + - Vivo A + - Evans ME + - '**Jones M**' + - Safdar N + - Pfeiffer C + - Smith B + - Wilson G + - Evans CT + publisher: Open forum infectious diseases + date: '2022-09-09' + link: https://doi.org/10.1093/ofid/ofac456 + type: paper + year: 2022 +- id: doi:10.1016/j.jbi.2022.104178 + title: A flexible framework for visualizing and exploring patient misdiagnosis over + time. + authors: + - Widanagamaachchi W + - Peterson K + - Chapman A + - Classen D + - '**Jones M**' + publisher: Journal of biomedical informatics + date: '2022-09-02' + link: https://doi.org/10.1016/j.jbi.2022.104178 + type: paper + year: 2022 +- id: doi:10.1542/hpeds.2022-006539 + title: Red Blood Cell Distribution Width and Pediatric Community-Acquired Pneumonia + Disease Severity. + authors: + - Jaclyn Lee + - Yuwei Zhu + - Derek J Williams + - Wesley H Self + - Sandra R Arnold + - Jonathan A McCullers + - Krow Ampofo + - '**Andrew T Pavia**' + - Evan J Anderson + - Seema Jain + - Kathryn M Edwards + - Carlos G Grijalva + publisher: Hospital pediatrics + date: '2022-09-01' + link: https://doi.org/10.1542/hpeds.2022-006539 + type: paper + year: 2022 +- id: doi:10.1017/ice.2022.174 + title: Estimate of undetected severe acute respiratory coronavirus virus 2 (SARS-CoV-2) + infection in acute-care hospital settings using an individual-based microsimulation + model. + authors: + - Jones K + - Hadley E + - Preiss S + - '**Lofgren ET**' + - Rice DP + - Stoner MCD + - Rhea S + - Adams JW + publisher: Infection control and hospital epidemiology + date: '2022-09-01' + link: https://doi.org/10.1017/ice.2022.174 + type: paper + year: 2022 +- id: doi:10.1007/s40258-022-00743-y + title: 'Correction to: Consolidated Health Economic Evaluation Reporting Standards + 2022 (CHEERS 2022) Statement: Updated Reporting Guidance for Health Economic Evaluations.' + authors: + - Husereau D + - Drummond M + - Augustovski F + - de Bekker-Grob E + - Briggs AH + - Carswell C + - Caulley L + - '**Chaiyakunapruk N**' + - Greenberg D + - Loder E + - Mauskopf J + - Mullins CD + - Petrou S + - Pwu RF + - Staniszewska S + publisher: Applied health economics and health policy + date: '2022-09-01' + link: https://doi.org/10.1007/s40258-022-00743-y + type: paper + year: 2022 +- id: doi:10.2196/39057 + title: 'Standard Vocabularies to Improve Machine Learning Model Transferability + With Electronic Health Record Data: Retrospective Cohort Study Using Health Care-Associated + Infection.' + authors: + - Kiser AC + - Eilbeck K + - Ferraro JP + - Skarda DE + - '**Samore MH**' + - Bucher B + publisher: JMIR medical informatics + date: '2022-08-30' + link: https://doi.org/10.2196/39057 + type: paper + year: 2022 +- id: doi:10.1089/chi.2022.0131 + title: Lack of Association Between Pandemic School Mode Policy and Pediatric Body + Mass Index Percentile Over Time. + authors: + - Lloyd Fisher + - '**Richard E Nelson**' + - Zeynep Ertem + - Elissa M Schechter-Perkins + - Emily Oster + - Westyn Branch-Elliman + publisher: Childhood obesity (Print) + date: '2022-08-24' + link: https://doi.org/10.1089/chi.2022.0131 + type: paper + year: 2022 +- id: doi:10.1186/s12889-022-13989-x + title: Integrating tick density and park visitor behaviors to assess the risk of + tick exposure in urban parks on Staten Island, New York. + authors: + - Erin Hassett + - Maria Diuk-Wasser + - Laura Harrington + - '**Pilar Fernandez**' + publisher: BMC public health + date: '2022-08-23' + link: https://doi.org/10.1186/s12889-022-13989-x + type: paper + year: 2022 +- id: doi:10.3390/bs12080296 + title: Difficulties with Emotion Regulation during COVID-19 and Associations with + Boredom in College Students. + authors: + - '**Weybright EH**' + - Doering EL + - Perone S + publisher: Behavioral sciences (Basel, Switzerland) + date: '2022-08-20' + link: https://doi.org/10.3390/bs12080296 + type: paper + year: 2022 +- id: doi:10.1017/ice.2022.182 + title: Implementation and outcomes of a clinician-directed intervention to improve + antibiotic prescribing for acute respiratory tract infections within the Veterans' + Affairs Healthcare System. + authors: + - Karl J Madaras-Kelly + - Suzette A Rovelsky + - Robert A McKie + - McKenna R Nevers + - Jian Ying + - Benjamin A Haaland + - Chad L Kay + - Melissa L Christopher + - Lauri A Hicks + - '**Mathew H Samore**' + publisher: Infection control and hospital epidemiology + date: '2022-08-15' + link: https://doi.org/10.1017/ice.2022.182 + type: paper + year: 2022 +- id: doi:10.3390/bs12080282 + title: 'Sound and Silence: The Effects of Environmental Conditions on State Boredom + in an Online Study during the COVID-19 Pandemic.' + authors: + - Anderson AJ + - McMeen CE + - Perone S + - '**Weybright EH**' + publisher: Behavioral sciences (Basel, Switzerland) + date: '2022-08-12' + link: https://doi.org/10.3390/bs12080282 + type: paper + year: 2022 +- id: doi:10.1038/s41597-022-01488-y + title: Daily 1 km terrain resolving maps of surface fine particulate matter for + the western United States 2003-2021. + authors: + - Swanson A + - Holden ZA + - Graham J + - Warren DA + - Noonan C + - '**Landguth E**' + publisher: Scientific data + date: '2022-08-02' + link: https://doi.org/10.1038/s41597-022-01488-y + type: paper + year: 2022 +- id: doi:10.1001/jamainternmed.2022.2291 + title: Temporal Trends in Antimicrobial Prescribing During Hospitalization for Potential + Infection and Sepsis. + authors: + - Prescott HC + - Seelye S + - Wang XQ + - Hogan CK + - Smith JT + - Kipnis P + - Barreda F + - Donnelly JP + - Pogue JM + - Iwashyna TJ + - '**Jones MM**' + - Liu VX + publisher: JAMA internal medicine + date: '2022-08-01' + link: https://doi.org/10.1001/jamainternmed.2022.2291 + type: paper + year: 2022 +- id: doi:10.1093/cid/ciab987 + title: Optimal Urine Culture Diagnostic Stewardship Practice-Results from an Expert + Modified-Delphi Procedure. + authors: + - Claeys KC + - Trautner BW + - Leekha S + - Coffey KC + - Crnich CJ + - Diekema DJ + - Fakih MG + - Goetz MB + - Gupta K + - '**Jones MM**' + - Leykum L + - Liang SY + - Pineles L + - Pleiss A + - Spivak ES + - Suda KJ + - Taylor JM + - Rhee C + - Morgan DJ + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2022-08-01' + link: https://doi.org/10.1093/cid/ciab987 + type: paper + year: 2022 +- id: doi:10.1136/bmjebm-2020-111634 + title: 'Economic evaluation of direct oral anticoagulants (DOACs) versus vitamin + K antagonists (VKAs) for stroke prevention in patients with atrial fibrillation: + a systematic review and meta-analysis' + authors: + - Rini Noviyani + - Sitaporn Youngkong + - Surakit Nathisuwan + - Bhavani Shankara Bagepally + - Usa Chaikledkaew + - '**Nathorn Chaiyakunapruk**' + - Gareth McKay + - Piyamitr Sritara + - John Attia + - Ammarin Thakkinstian + publisher: BMJ Evidence-Based Medicine + date: '2022-08-01' + link: https://doi.org/10.1136/bmjebm-2020-111634 + type: paper + year: 2022 +- id: doi:10.3390/v14081672 + title: Sequence Similarity Network Analysis Provides Insight into the Temporal and + Geographical Distribution of Mutations in SARS-CoV-2 Spike Protein. + authors: + - Patil SS + - Catanese HN + - Brayton KA + - '**Lofgren ET**' + - '**Gebremedhin AH**' + publisher: Viruses + date: '2022-07-29' + link: https://doi.org/10.3390/v14081672 + type: paper + year: 2022 +- id: doi:10.1016/j.artmed.2022.102361 + title: 'Artificial intelligence in acute respiratory distress syndrome: A systematic + review.' + authors: + - '**Rashid M**' + - Ramakrishnan M + - Chandran VP + - Nandish S + - Nair S + - Shanbhag V + - Thunga G + publisher: Artificial intelligence in medicine + date: '2022-07-19' + link: https://doi.org/10.1016/j.artmed.2022.102361 + type: paper + year: 2022 +- id: doi:10.1016/j.eclinm.2022.101565 + title: 'Combining cost-effectiveness results into a single measurement: What is + the value?: Authors response.' + authors: + - Dilokthornsakul P + - Veettil SK + - Lan LM + - Thakkinstian A + - Hutubessy R + - Lambach P + - '**Chaiyakunapruk N**' + publisher: EClinicalMedicine + date: '2022-07-15' + link: https://doi.org/10.1016/j.eclinm.2022.101565 + type: paper + year: 2022 +- id: doi:10.1080/21645515.2022.2095823 + title: Potential changes in vaccine access and policy landscape in Thailand post + COVID-19 pandemic. + authors: + - Kategeaw W + - Youngkong S + - Taychakhoonavudh S + - Techathawat S + - '**Chaiyakunapruk N**' + publisher: Human vaccines & immunotherapeutics + date: '2022-07-11' + link: https://doi.org/10.1080/21645515.2022.2095823 + type: paper + year: 2022 +- id: doi:10.1109/tsg.2022.3156115 + title: MPC-Based Decentralized Voltage Control in Power Distribution Systems With + EV and PV Coordination + authors: + - Lusha Wang + - Anamika Dubey + - '**Assefaw H. Gebremedhin**' + - Anurag K. Srivastava + - Noel Schulz + publisher: IEEE Transactions on Smart Grid + date: '2022-07-01' + link: https://doi.org/10.1109/TSG.2022.3156115 + type: paper + year: 2022 +- id: doi:10.1001/jamanetworkopen.2022.20391 + title: Estimated Impact of the US COVID-19 Vaccination Campaign-Getting to 94% of + Deaths Prevented. + authors: + - Malia Jones + - '**Karim Khader**' + - Westyn Branch-Elliman + publisher: JAMA network open + date: '2022-07-01' + link: https://doi.org/10.1001/jamanetworkopen.2022.20391 + type: paper + year: 2022 +- id: doi:10.1371/journal.pone.0269531 + title: 'Efficacy and safety of saroglitazar for the management of dyslipidemia: + A systematic review and meta-analysis of interventional studies.' + authors: + - Chhabra M + - Vidyasagar K + - Gudi SK + - Sharma J + - Sharma R + - '**Rashid M**' + publisher: PloS one + date: '2022-07-01' + link: https://doi.org/10.1371/journal.pone.0269531 + type: paper + year: 2022 +- id: doi:10.1111/bcp.15279 + title: 'Effects of pharmacist interventions on cardiovascular risk factors and outcomes: + An umbrella review of meta‐analysis of randomized controlled trials' + authors: + - Wipharak Rattanavipanon + - Thanaputt Chaiyasothi + - Punyawee Puchsaka + - Rachata Mungkornkaew + - Surakit Nathisuwan + - Sajesh K Veettil + - '**Nathorn Chaiyakunapruk**' + publisher: British Journal of Clinical Pharmacology + date: '2022-07-01' + link: https://doi.org/10.1111/bcp.15279 + type: paper + year: 2022 +- id: doi:10.1016/j.eclinm.2022.101509 + title: 'Comparative effects of music interventions on depression in older adults: + A systematic review and network meta-analysis.' + authors: + - Dhippayom T + - Saensook T + - Promkhatja N + - Teaktong T + - '**Chaiyakunapruk N**' + - Devine B + publisher: EClinicalMedicine + date: '2022-07-01' + link: https://doi.org/10.1016/j.eclinm.2022.101509 + type: paper + year: 2022 +- id: doi:10.1136/bmjdrc-2021-002738 + title: Association of hemoglobin A1c time in range with risk for diabetes complications. + authors: + - David C Mohr + - Libin Zhang + - Julia C Prentice + - '**Richard E Nelson**' + - Donglin Li + - Erin Pleasants + - Paul R Conlin + publisher: BMJ open diabetes research & care + date: '2022-07-01' + link: https://doi.org/10.1136/bmjdrc-2021-002738 + type: paper + year: 2022 +- id: doi:10.3390/vaccines10071059 + title: 'COVID-19 Vaccine Hesitancy: The Perils of Peddling Science by Social Media + and the Lay Press.' + authors: + - Thorakkattil SA + - Abdulsalim S + - Karattuthodi MS + - Unnikrishnan MK + - '**Rashid M**' + - Thunga G + publisher: Vaccines + date: '2022-06-30' + link: https://doi.org/10.3390/vaccines10071059 + type: paper + year: 2022 +- id: doi:10.1371/journal.pntd.0010455 + title: 'Artificial intelligence in differentiating tropical infections: A step ahead.' + authors: + - Shenoy S + - Rajan AK + - '**Rashid M**' + - Chandran VP + - Poojari PG + - Kunhikatta V + - Acharya D + - Nair S + - Varma M + - Thunga G + publisher: PLoS neglected tropical diseases + date: '2022-06-30' + link: https://doi.org/10.1371/journal.pntd.0010455 + type: paper + year: 2022 +- id: doi:10.1002/jhm.12904 + title: Associations between comorbidity-related functional limitations and pneumonia + outcomes. + authors: + - Chastity Greene + - Hui Nian + - Yuwei Zhu + - James W Antoon + - Katherine L Freundlich + - Krow Ampofo + - Laura F Sartori + - Jakobi Johnson + - Donald H Arnold + - '**Per Gesteland**' + - Justine Stassun + - Jeff Robison + - '**Andrew T Pavia**' + - Carlos G Grijalva + - Derek J Williams + publisher: Journal of hospital medicine + date: '2022-06-27' + link: https://doi.org/10.1002/jhm.12904 + type: paper + year: 2022 +- id: doi:10.1016/j.lanwpc.2022.100503 + title: Using real world evidence to generate cost-effectiveness analysis of fibrinolytic + therapy in patients with ST-segment elevation myocardial infarction in Thailand. + authors: + - Trerayapiwat K + - Jinatongthai P + - Vathesatogkit P + - Sritara P + - Paengsai N + - Dilokthornsakul P + - Nathisuwan S + - Le LM + - '**Chaiyakunapruk N**' + publisher: The Lancet regional health. Western Pacific + date: '2022-06-24' + link: https://doi.org/10.1016/j.lanwpc.2022.100503 + type: paper + year: 2022 +- id: doi:10.1186/s12882-022-02850-3 + title: 'Efficacy and safety of urate-lowering agents in asymptomatic hyperuricemia: + systematic review and network meta-analysis of randomized controlled trials.' + authors: + - Sapankaew T + - Thadanipon K + - Ruenroengbun N + - Chaiyakittisopon K + - Ingsathit A + - Numthavaj P + - '**Chaiyakunapruk N**' + - McKay G + - Attia J + - Thakkinstian A + publisher: BMC nephrology + date: '2022-06-23' + link: https://doi.org/10.1186/s12882-022-02850-3 + type: paper + year: 2022 +- id: doi:10.1371/journal.pntd.0010504 + title: Zaire ebolavirus surveillance near the Bikoro region of the Democratic Republic + of the Congo during the 2018 outbreak reveals presence of seropositive bats. + authors: + - '**Seifert SN**' + - Fischer RJ + - Kuisma E + - Badzi Nkoua C + - Bounga G + - Akongo MJ + - Schulz JE + - Escudero-Pérez B + - Akoundzie BJ + - Ampiri VRB + - Dieudonne A + - Indolo GD + - Kaba SD + - Louzolo I + - Macosso LN + - Mavoungou Y + - Miegakanda VB + - Nina RA + - Samabide KT + - Ondzie AI + - Ntoumi F + - Muñoz-Fontela C + - Mombouli JV + - Olson SH + - Walzer C + - Niama FR + - Munster VJ + publisher: PLoS neglected tropical diseases + date: '2022-06-22' + link: https://doi.org/10.1371/journal.pntd.0010504 + type: paper + year: 2022 +- id: doi:10.1016/j.thromres.2022.06.004 + title: 'Incremental net monetary benefit of direct oral anticoagulants for the prevention + of venous thromboembolism after total knee or hip replacement: A systematic review + and meta-analysis.' + authors: + - Veettil SK + - Harris J + - Syeed MS + - Thakkinstian A + - Chaikledkaew U + - Witt DM + - '**Chaiyakunapruk N**' + publisher: Thrombosis research + date: '2022-06-21' + link: https://doi.org/10.1016/j.thromres.2022.06.004 + type: paper + year: 2022 +- id: doi:10.3390/vaccines10060950 + title: 'Public Health Value of a Hypothetical Pneumococcal Conjugate Vaccine (PCV) + Introduction: A Case Study.' + authors: + - '**Chaiyakunapruk N**' + - Song D + - Lynch J + - Kim JH + - Dilokthornsakul P + - Chotpitayasunondh T + - Mogasale V + publisher: Vaccines + date: '2022-06-15' + link: https://doi.org/10.3390/vaccines10060950 + type: paper + year: 2022 +- id: doi:10.1007/s10940-022-09546-9 + title: 'Officer Networks and Firearm Behaviors: Assessing the Social Transmission + of Weapon-Use' + authors: + - Marie Ouellet + - Sadaf Hashimi + - '**George G. Vega Yon**' + publisher: Journal of Quantitative Criminology + date: '2022-06-15' + link: https://www.scopus.com/inward/record.url?eid=2-s2.0-85132125404&partnerID=MN8TOARS + type: paper + year: 2022 +- id: doi:10.1371/journal.pone.0269009 + title: 'Methodological approaches for assessing certainty of the evidence in umbrella + reviews: A scoping review' + authors: + - Saranrat Sadoyu + - Kaniz Afroz Tanni + - Nontaporn Punrum + - Sobhon Paengtrai + - Warittakorn Kategaew + - Nattiwat Promchit + - Nai Ming Lai + - Ammarin Thakkinstian + - Surachat Ngorsuraches + - Mukdarut Bangpan + - Sajesh Veettil + - '**Nathorn Chaiyakunapruk**' + publisher: PLoS ONE + date: '2022-06-08' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85131771607&partnerID=MN8TOARS + type: paper + year: 2022 +- id: doi:10.1017/ice.2022.136 + title: 'Pharmacist gender and physician acceptance of antibiotic stewardship recommendations: + An analysis of the reducing overuse of antibiotics at discharge home intervention.' + authors: + - Valerie M Vaughn + - Daniel L Giesler + - Daraoun Mashrah + - Adamo Brancaccio + - Katie Sandison + - Emily S Spivak + - '**Julia E Szymczak**' + - Chaorong Wu + - Jennifer K Horowitz + - Linda Bashaw + - Adam L Hersh + publisher: Infection control and hospital epidemiology + date: '2022-06-07' + link: https://doi.org/10.1017/ice.2022.136 + type: paper + year: 2022 +- id: doi:10.1017/ash.2021.220 + title: Increased carbapenemase testing following implementation of national VA guidelines + for carbapenem-resistant Enterobacterales (CRE). + authors: + - Fitzpatrick MA + - Suda KJ + - Ramanathan S + - Wilson G + - Poggensee L + - Evans M + - '**Jones MM**' + - Pfeiffer CD + - Klutts JS + - Perencevich E + - Rubin M + - Evans CT + - QUERI CARRIAGE Program + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2022-06-02' + link: https://doi.org/10.1017/ash.2021.220 + type: paper + year: 2022 +- id: doi:10.31219/osf.io/udqjr + title: Reusing Interactive Analysis Workflows + authors: + - Kiran Gadhave + - Zach Cutler + - '**Alexander Lex**' + publisher: Computer Graphics Forum + date: '2022-06-01' + link: http://dx.doi.org/10.1111/cgf.14528 + type: paper + year: 2022 +- id: doi:10.1186/s12879-022-07436-w + title: 'Epidemiology and outcomes associated with carbapenem-resistant Acinetobacter + baumannii and carbapenem-resistant Pseudomonas aeruginosa: a retrospective cohort + study.' + authors: + - Vivo A + - Fitzpatrick MA + - Suda KJ + - '**Jones MM**' + - Perencevich EN + - '**Rubin MA**' + - Ramanathan S + - Wilson GM + - Evans ME + - Evans CT + publisher: BMC infectious diseases + date: '2022-05-24' + link: https://doi.org/10.1186/s12879-022-07436-w + type: paper + year: 2022 +- id: doi:10.3389/fnut.2022.880014 + title: 'Effects of Synbiotics, Probiotics, and Prebiotics on Liver Enzymes of Patients + With Non-alcoholic Fatty Liver Disease: A Systematic Review and Network Meta-Analysis.' + authors: + - Kanchanasurakit S + - Kositamongkol C + - Lanoi K + - Nunta M + - Saetuan T + - '**Chaiyakunapruk N**' + - Saokaew S + - Phisalprapa P + publisher: Frontiers in nutrition + date: '2022-05-20' + link: https://doi.org/10.3389/fnut.2022.880014 + type: paper + year: 2022 +- id: doi:10.1101/2022.05.10.22274910 + title: Development and evaluation of an interoperable natural language processing + system for identifying pneumonia across clinical settings of care + authors: + - Chapman AB + - Peterson KS + - Rutter E + - Nevers M + - Zhang M + - Ying J + - '**Jones M**' + - Classen D + - Jones B + publisher: JAMIA open + date: '2022-05-10' + link: https://doi.org/10.1101/2022.05.10.22274910 + type: paper + year: 2022 +- id: doi:10.1017/ice.2022.100 + title: 'Performance of infectious diseases specialists, hospitalists, and other + internal medicine physicians in antimicrobial case-based scenarios: Potential + impact of antimicrobial stewardship programs at 16 Veterans'' Affairs medical + centers.' + authors: + - Graber CJ + - Simon AR + - Zhang Y + - Goetz MB + - '**Jones MM**' + - Butler JM + - Chou AF + - Glassman PA + publisher: Infection control and hospital epidemiology + date: '2022-05-04' + link: https://doi.org/10.1017/ice.2022.100 + type: paper + year: 2022 +- id: doi:10.1002/jrsm.1553 + title: 'Using artificial intelligence methods for systematic review in health sciences: + A systematic review' + authors: + - Aymeric Blaizot + - Sajesh K Veettil + - Pantakarn Saidoung + - Carlos Francisco Moreno-Garcia + - Nirmalie Wiratunga + - Magaly Aceves-Martins + - Nai Ming Lai + - '**Nathorn Chaiyakunapruk**' + publisher: Research Synthesis Methods + date: '2022-05-01' + link: https://doi.org/10.1002/jrsm.1553 + type: paper + year: 2022 +- id: doi:10.3390/covid2050044 + title: Imported SARS-CoV-2 Variants of Concern Drove Spread of Infections across + Kenya during the Second Year of the Pandemic + authors: + - Carolyne Nasimiyu + - Damaris Matoke-Muhia + - Gilbert K. Rono + - Eric Osoro + - Daniel O. Ouso + - J. Milkah Mwangi + - Nicholas Mwikwabe + - Kelvin Thiong’o + - Jeanette Dawa + - Isaac Ngere + - John Gachohi + - Samuel Kariuki + - Evans Amukoye + - Marianne Mureithi + - Philip Ngere + - Patrick Amoth + - Ian Were + - Lyndah Makayotto + - Vishvanath Nene + - Edward O. Abworo + - M. Kariuki Njenga + - '**Stephanie N. Seifert**' + - Samuel O. Oyola + publisher: COVID + date: '2022-05-01' + link: https://www.mdpi.com/2673-8112/2/5/44 + type: paper + year: 2022 +- id: doi:10.1016/j.msard.2022.103834 + title: 'Genetic biomarkers in multiple sclerosis: An umbrella review of meta-analyses + of observational studies.' + authors: + - Tempest A + - Veettil SK + - Maharajan MK + - Earl JC + - Ngorsuraches S + - '**Chaiyakunapruk N**' + publisher: Multiple sclerosis and related disorders + date: '2022-04-30' + link: https://doi.org/10.1016/j.msard.2022.103834 + type: paper + year: 2022 +- id: doi:10.1016/j.gie.2022.04.018 + title: 'Pre-endoscopy coronavirus disease 2019 screening and severe acute respiratory + syndrome coronavirus-2 nucleic acid amplification testing in the Veterans Affairs + healthcare system: clinical practice patterns, outcomes, and relationship to procedure + volume.' + authors: + - Gawron AJ + - Sultan S + - Glorioso TJ + - Califano S + - Kralovic SM + - '**Jones M**' + - Kirsh S + - Dominitz JA + publisher: Gastrointestinal endoscopy + date: '2022-04-22' + link: https://doi.org/10.1016/j.gie.2022.04.018 + type: paper + year: 2022 +- id: doi:10.1016/j.eclinm.2022.101410 + title: 'Economic evaluation of seasonal influenza vaccination in elderly and health + workers: A systematic review and meta-analysis.' + authors: + - Dilokthornsakul P + - Lan LM + - Thakkinstian A + - Hutubessy R + - Lambach P + - '**Chaiyakunapruk N**' + publisher: EClinicalMedicine + date: '2022-04-21' + link: https://doi.org/10.1016/j.eclinm.2022.101410 + type: paper + year: 2022 +- id: doi:10.1111/jcpt.13662 + title: 'Use of histamine-2 receptor antagonists and risk of inflammatory bowel diseases: + A systematic review and meta-analysis of observational studies.' + authors: + - D'sa FF + - Fernandes EZ + - Kesarkar SV + - Swaminathan L + - Kunhikatta V + - '**Rashid M**' + - Thunga G + - Chandran VP + - Nair S + publisher: Journal of clinical pharmacy and therapeutics + date: '2022-04-10' + link: https://doi.org/10.1111/jcpt.13662 + type: paper + year: 2022 +- id: doi:10.1073/pnas.2113561119 + title: Evaluation of individual and ensemble probabilistic forecasts of COVID-19 + mortality in the United States. + authors: + - Cramer EY + - Ray EL + - Lopez VK + - Bracher J + - Brennen A + - Castro Rivadeneira AJ + - Gerding A + - Gneiting T + - House KH + - Huang Y + - Jayawardena D + - Kanji AH + - Khandelwal A + - Le K + - Mühlemann A + - Niemi J + - Shah A + - Stark A + - Wang Y + - Wattanachit N + - Zorn MW + - Gu Y + - Jain S + - Bannur N + - Deva A + - Kulkarni M + - Merugu S + - Raval A + - Shingi S + - Tiwari A + - White J + - Abernethy NF + - Woody S + - Dahan M + - Fox S + - Gaither K + - Lachmann M + - Meyers LA + - Scott JG + - Tec M + - Srivastava A + - George GE + - Cegan JC + - Dettwiller ID + - England WP + - Farthing MW + - Hunter RH + - Lafferty B + - Linkov I + - Mayo ML + - Parno MD + - Rowland MA + - Trump BD + - Zhang-James Y + - Chen S + - Faraone SV + - Hess J + - Morley CP + - Salekin A + - Wang D + - Corsetti SM + - Baer TM + - Eisenberg MC + - Falb K + - Huang Y + - Martin ET + - McCauley E + - Myers RL + - Schwarz T + - Sheldon D + - Gibson GC + - Yu R + - Gao L + - Ma Y + - Wu D + - Yan X + - Jin X + - Wang YX + - Chen Y + - Guo L + - Zhao Y + - Gu Q + - Chen J + - Wang L + - Xu P + - Zhang W + - Zou D + - Biegel H + - Lega J + - McConnell S + - Nagraj VP + - Guertin SL + - Hulme-Lowe C + - Turner SD + - Shi Y + - Ban X + - Walraven R + - Hong QJ + - Kong S + - van de Walle A + - Turtle JA + - Ben-Nun M + - Riley S + - Riley P + - Koyluoglu U + - DesRoches D + - Forli P + - Hamory B + - Kyriakides C + - Leis H + - Milliken J + - Moloney M + - Morgan J + - Nirgudkar N + - Ozcan G + - Piwonka N + - Ravi M + - Schrader C + - Shakhnovich E + - Siegel D + - Spatz R + - Stiefeling C + - Wilkinson B + - Wong A + - Cavany S + - España G + - Moore S + - Oidtman R + - Perkins A + - Kraus D + - Kraus A + - Gao Z + - Bian J + - Cao W + - Lavista Ferres J + - Li C + - Liu TY + - Xie X + - Zhang S + - Zheng S + - Vespignani A + - Chinazzi M + - Davis JT + - Mu K + - Pastore Y Piontti A + - Xiong X + - Zheng A + - Baek J + - Farias V + - Georgescu A + - Levi R + - Sinha D + - Wilde J + - Perakis G + - Bennouna MA + - Nze-Ndong D + - Singhvi D + - Spantidakis I + - Thayaparan L + - Tsiourvas A + - Sarker A + - Jadbabaie A + - Shah D + - Della Penna N + - Celi LA + - Sundar S + - Wolfinger R + - Osthus D + - Castro L + - Fairchild G + - Michaud I + - Karlen D + - Kinsey M + - Mullany LC + - Rainwater-Lovett K + - Shin L + - Tallaksen K + - Wilson S + - Lee EC + - Dent J + - Grantz KH + - Hill AL + - Kaminsky J + - Kaminsky K + - '**Keegan LT**' + - Lauer SA + - Lemaitre JC + - Lessler J + - Meredith HR + - Perez-Saez J + - Shah S + - Smith CP + - Truelove SA + - Wills J + - Marshall M + - Gardner L + - Nixon K + - Burant JC + - Wang L + - Gao L + publisher: Proceedings of the National Academy of Sciences of the United States + of America + date: '2022-04-08' + link: https://doi.org/10.1073/pnas.2113561119 + type: paper + year: 2022 +- id: doi:10.2196/30687 + title: 'Online Searching as a Practice for Evidence-Based Medicine in the Neonatal + Intensive Care Unit, University of Malaya Medical Center, Malaysia: Cross-sectional + Study' + authors: + - Nor Asiah Muhamad + - Vinesha Selvarajah + - Anuja Dharmaratne + - Anushia Inthiran + - Nor Soleha Mohd Dali + - '**Nathorn Chaiyakunapruk**' + - Nai Ming Lai + publisher: JMIR Formative Research + date: '2022-04-06' + link: https://doi.org/10.2196/30687 + type: paper + year: 2022 +- id: doi:10.1017/ice.2022.93 + title: Healthcare-associated infections in Veterans Affairs acute-care and long-term + healthcare facilities during the coronavirus disease 2019 (COVID-19) pandemic. + authors: + - Evans ME + - Simbartl LA + - Kralovic SM + - Clifton M + - DeRoos K + - McCauley BP + - Gauldin N + - Flarida LK + - Gamage SD + - '**Jones MM**' + - Roselle GA + publisher: Infection control and hospital epidemiology + date: '2022-04-05' + link: https://doi.org/10.1017/ice.2022.93 + type: paper + year: 2022 +- id: doi:10.1136/bmjgh-2021-007409 + title: 'The economic burden of dementia in low- and middle-income countries (LMICs): + a systematic review' + authors: + - Mattap SM + - Mohan D + - McGrattan AM + - Allotey P + - Stephan BC + - Reidpath DD + - Siervo M + - Robinson L + - '**Chaiyakunapruk N**' + publisher: BMJ Global Health + date: '2022-04-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85128392377&partnerID=MN8TOARS + type: paper + year: 2022 +- id: doi:10.1542/hpeds.2021-006510 + title: Association Between Procalcitonin and Antibiotics in Children With Community-Acquired + Pneumonia. + authors: + - Mert Sekmen + - Jakobi Johnson + - Yuwei Zhu + - Laura F Sartori + - Carlos G Grijalva + - Justine Stassun + - Donald H Arnold + - Krow Ampofo + - Jeff Robison + - '**Per H Gesteland**' + - '**Andrew T Pavia**' + - Derek J Williams + publisher: Hospital pediatrics + date: '2022-04-01' + link: https://doi.org/10.1542/hpeds.2021-006510 + type: paper + year: 2022 +- id: doi:10.1017/ice.2022.55 + title: 'Hospital coronavirus disease 2019 (COVID-19) public health reporting: Lessons + from validation of an automated surveillance tool to facilitate data collection.' + authors: + - Gamage SD + - Evans ME + - McCauley BP + - Lipscomb KR + - Flarida L + - '**Jones MM**' + - Baza M + - Barraza J + - Simbartl LA + - Roselle GA + publisher: Infection control and hospital epidemiology + date: '2022-03-30' + link: https://doi.org/10.1017/ice.2022.55 + type: paper + year: 2022 +- id: doi:10.1016/j.jval.2022.02.010 + title: One-Year Costs Associated With the Veterans Affairs National TeleStroke Program. + authors: + - Todd H Wagner + - Lena Schoemaker + - Elizabeth Gehlert + - '**Richard E Nelson**' + - Katherine Murphy + - Sharyl Martini + - Glenn D Graham + - Prasanthi Govindarajan + - Linda S Williams + publisher: 'Value in health : the journal of the International Society for Pharmacoeconomics + and Outcomes Research' + date: '2022-03-26' + link: https://doi.org/10.1016/j.jval.2022.02.010 + type: paper + year: 2022 +- id: doi:10.1371/journal.pone.0265927 + title: 'Mobile applications in medical education: A systematic review and meta-analysis.' + authors: + - Chandran VP + - Balakrishnan A + - '**Rashid M**' + - Pai Kulyadi G + - Khan S + - Devi ES + - Nair S + - Thunga G + publisher: PloS one + date: '2022-03-24' + link: https://doi.org/10.1371/journal.pone.0265927 + type: paper + year: 2022 +- id: doi:10.1093/cid/ciab696 + title: Mortality, Length of Stay, and Healthcare Costs Associated With Multidrug-Resistant + Bacterial Infections Among Elderly Hospitalized Patients in the United States. + authors: + - '**Richard E Nelson**' + - David Hyun + - Amanda Jezek + - '**Matthew H Samore**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2022-03-23' + link: https://doi.org/10.1093/cid/ciab696 + type: paper + year: 2022 +- id: doi:10.1186/s12911-022-01794-w + title: Clinician documentation of patient centered care in the electronic health + record. + authors: + - Jorie M Butler + - Bryan Gibson + - Olga V Patterson + - Laura J Damschroder + - Corrinne H Halls + - Daniel W Denhalter + - '**Matthew H Samore**' + - Haojia Li + - Yue Zhang + - Scott L DuVall + publisher: BMC medical informatics and decision making + date: '2022-03-12' + link: https://doi.org/10.1186/s12911-022-01794-w + type: paper + year: 2022 +- id: doi:10.1007/s11606-022-07413-8 + title: Trends in Illness Severity, Hospitalization, and Mortality for Community-Onset + Pneumonia at 118 US Veterans Affairs Medical Centers. + authors: + - Jones BE + - Ying J + - Nevers MR + - Alba PR + - Patterson OV + - Peterson KS + - Rutter E + - Christensen MA + - Stern S + - '**Jones MM**' + - Gundlapalli A + - Dean NC + - Samore MC + - Greene T + publisher: Journal of general internal medicine + date: '2022-03-09' + link: https://doi.org/10.1007/s11606-022-07413-8 + type: paper + year: 2022 +- id: doi:10.1016/j.ajog.2022.02.042 + title: 'Comparative efficacy and safety of pharmacologic interventions to prevent + mother-to-child transmission of hepatitis B virus: a systematic review and network + meta-analysis' + authors: + - Nguyen HT + - Thavorncharoensap M + - Phung TL + - Anothaisintawee T + - Chaikledkaew U + - Sobhonslidsuk A + - Talungchit P + - '**Chaiyakunapruk N**' + - Attia J + - McKay GJ + - Thakkinstian A + publisher: American Journal of Obstetrics and Gynecology + date: '2022-03-06' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85127915976&partnerID=MN8TOARS + type: paper + year: 2022 +- id: doi:10.1101/2022.03.01.22271660 + title: Examining the Impact of ICU Population Interaction Structure on Modeled Colonization + Dynamics of Staphylococcus aureus + authors: + - Mietchen MS + - Short CT + - Samore M + - '**Lofgren ET**' + - the CDC Modeling Infectious Diseases in Healthcare Program (MInD-Healthcare) + publisher: PLoS computational biology + date: '2022-03-03' + link: https://doi.org/10.1101/2022.03.01.22271660 + type: paper + year: 2022 +- id: doi:10.1111/1475-6773.13931 + title: Analysis of a national response to a White House directive for ending veteran + suicide. + authors: + - Kalvesmaki AF + - Chapman AB + - Peterson KS + - Pugh MJ + - '**Jones M**' + - Gleason TC + publisher: Health services research + date: '2022-03-03' + link: https://doi.org/10.1111/1475-6773.13931 + type: paper + year: 2022 +- id: doi:10.3390/bs12030066 + title: 'Sleep, Diet, Physical Activity, and Stress during the COVID-19 Pandemic: + A Qualitative Analysis.' + authors: + - Kyanna Orr + - Zachary Ta + - '**Kimberley Shoaf**' + - Tanya M Halliday + - Selene Tobin + - Kelly Glazer Baron + publisher: Behavioral sciences (Basel, Switzerland) + date: '2022-03-02' + link: https://doi.org/10.3390/bs12030066 + type: paper + year: 2022 +- id: doi:10.1136/bmjgh-2021-007639 + title: Situation of snakebite, antivenom market and access to antivenoms in ASEAN + countries + authors: + - Patikorn C + - Ismail AK + - Abidin SAZ + - Blanco FB + - Blessmann J + - Choumlivong K + - Comandante JD + - Doan UV + - Mohamed Ismail Z + - Khine YY + - Maharani T + - Nwe MT + - Qamruddin RM + - Safferi RS + - Santamaria E + - Tiglao PJG + - Trakulsrichai S + - Vasaruchapong T + - '**Chaiyakunapruk N**' + - Taychakhoonavudh S + - Othman I + publisher: BMJ Global Health + date: '2022-03-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85126914721&partnerID=MN8TOARS + type: paper + year: 2022 +- id: doi:10.1016/j.japh.2022.02.015 + title: 'Effects of pharmacist interventions on pain intensity: Systematic review + and meta-analysis of randomized controlled trials.' + authors: + - Veettil SK + - Darouiche G + - Sawangjit R + - Cox N + - Lai NM + - '**Chaiyakunapruk N**' + publisher: 'Journal of the American Pharmacists Association : JAPhA' + date: '2022-02-25' + link: https://doi.org/10.1016/j.japh.2022.02.015 + type: paper + year: 2022 +- id: doi:10.1101/2022.02.22.22271374 + title: Who Is Hospitalized With Whom? Inpatient Contact Networks and Mixing Patterns + authors: + - Madhobi KF + - Kalyanaraman A + - Anderson DJ + - Dodds-Ashley E + - Moehring RW + - '**Lofgren ET**' + publisher: medRxiv + date: '2022-02-24' + link: https://doi.org/10.1101/2022.02.22.22271374 + type: preprint + year: 2022 +- id: doi:10.1186/s12913-022-07595-1 + title: 'Meta-analysis of economic evaluation studies: data harmonisation and methodological + issues.' + authors: + - Bagepally BS + - Chaikledkaew U + - '**Chaiyakunapruk N**' + - Attia J + - Thakkinstian A + publisher: BMC health services research + date: '2022-02-15' + link: https://doi.org/10.1186/s12913-022-07595-1 + type: paper + year: 2022 +- id: doi:10.3390/microorganisms10020407 + title: Three-Week Old Pigs Are Not Susceptible to Productive Infection with SARS-COV-2. + authors: + - Haddock E + - Callison J + - '**Seifert SN**' + - Okumura A + - Tang-Huau TL + - Leventhal SS + - Lewis MC + - Lovaglio J + - Hanley PW + - Shaia C + - Hawman DW + - Munster VJ + - Jarvis MA + - Richt JA + - Feldmann H + publisher: Microorganisms + date: '2022-02-10' + link: https://doi.org/10.3390/microorganisms10020407 + type: paper + year: 2022 +- id: doi:10.1371/journal.pgen.1010019 + title: 'Population genomics and geographic dispersal in Chagas disease vectors: + Landscape drivers and evidence of possible adaptation to the domestic setting.' + authors: + - Hernandez-Castro LE + - Villacís AG + - Jacobs A + - Cheaib B + - Day CC + - Ocaña-Mayorga S + - Yumiseva CA + - Bacigalupo A + - Andersson B + - Matthews L + - '**Landguth EL**' + - Costales JA + - Llewellyn MS + - Grijalva MJ + publisher: PLoS genetics + date: '2022-02-04' + link: https://doi.org/10.1371/journal.pgen.1010019 + type: paper + year: 2022 +- id: doi:10.1371/journal.pone.0260580 + title: Transient dynamics of infection transmission in a simulated intensive care + unit. + authors: + - Jackson KC + - Short CT + - Toman KR + - Mietchen MS + - '**Lofgren E**' + - CDC MInD-Healthcare Program + publisher: PloS one + date: '2022-02-03' + link: https://doi.org/10.1371/journal.pone.0260580 + type: paper + year: 2022 +- id: doi:10.1001/jamanetworkopen.2021.47882 + title: Prevalence, Characteristics, and Outcomes of Emergency Department Discharge + Among Patients With Sepsis. + authors: + - Ithan D Peltan + - Sierra R McLean + - Emily Murnin + - Allison M Butler + - Emily L Wilson + - '**Matthew H Samore**' + - Catherine L Hough + - Nathan C Dean + - Joseph R Bledsoe + - Samuel M Brown + publisher: JAMA network open + date: '2022-02-01' + link: https://doi.org/10.1001/jamanetworkopen.2021.47882 + type: paper + year: 2022 +- id: doi:10.1093/infdis/jiab376 + title: Genomic Diversity of Haemophilus influenzae Serotype a in an Outbreak Community-Alaska, + 2018. + authors: + - '**Nolen LD**' + - DeByle C + - Topaz N + - Simons BC + - Tiffany A + - Reasonover A + - Castrodale L + - McLaughlin J + - Klejka J + - Wang X + - Bruce M + publisher: The Journal of infectious diseases + date: '2022-02-01' + link: https://doi.org/10.1093/infdis/jiab376 + type: paper + year: 2022 +- id: doi:10.18553/jmcp.2022.28.2.146 + title: 'Consolidated Health Economic Evaluation Reporting Standards 2022 (CHEERS + 2022) statement: updated reporting guidance for health economic evaluations.' + authors: + - Husereau D + - Drummond M + - Augustovski F + - de Bekker-Grob E + - Briggs AH + - Carswell C + - Caulley L + - '**Chaiyakunapruk N**' + - Greenberg D + - Loder E + - Mauskopf J + - Daniel Mullins C + - Petrou S + - Pwu RF + - Staniszewska S + - CHEERS 2022 ISPOR Good Research Practices Task Force + publisher: Journal of managed care & specialty pharmacy + date: '2022-02-01' + link: https://doi.org/10.18553/jmcp.2022.28.2.146 + type: paper + year: 2022 +- id: doi:10.1016/j.ajic.2022.01.011 + title: Treatment of extensively-drug resistant (XDR) Acinetobacter and impact on + clinical outcomes in U.S. veterans affairs (VA) medical centers. + authors: + - Fitzpatrick MA + - Suda KJ + - Poggensee L + - Vivo A + - Wilson G + - '**Jones MM**' + - Evans M + - Safdar N + - Evans CT + publisher: American journal of infection control + date: '2022-01-30' + link: https://doi.org/10.1016/j.ajic.2022.01.011 + type: paper + year: 2022 +- id: doi:10.1017/ice.2021.528 + title: Development and evaluation of a structured guide to assess the preventability + of hospital-onset bacteremia and fungemia. + authors: + - Gregory M Schrank + - Anna Sick-Samuels + - Susan C Bleasdale + - Jesse T Jacob + - Raymund Dantes + - Runa H Gokhale + - '**Jeanmarie Mayer**' + - Preeti Mehrotra + - Sapna A Mehta + - Alfredo J Mena Lora + - Susan M Ray + - Chanu Rhee + - Jorge L Salinas + - Susan K Seo + - Andi L Shane + - Gita Nadimpalli + - Aaron M Milstone + - Gwen Robinson + - Clayton H Brown + - Anthony D Harris + - Surbhi Leekha + - CDC Prevention Epicenters Program + publisher: Infection control and hospital epidemiology + date: '2022-01-28' + link: https://doi.org/10.1017/ice.2021.528 + type: paper + year: 2022 +- id: doi:10.3389/fphar.2021.807446 + title: 'Barriers and Enablers for Adherence to Antiretroviral Therapy Among People + Living With HIV/AIDS in the Era of COVID-19: A Qualitative Study From Pakistan.' + authors: + - Ahmed A + - Dujaili JA + - Jabeen M + - Umair MM + - Chuah LH + - Hashmi FK + - Awaisu A + - '**Chaiyakunapruk N**' + publisher: Frontiers in pharmacology + date: '2022-01-28' + link: https://doi.org/10.3389/fphar.2021.807446 + type: paper + year: 2022 +- id: doi:10.1098/rsos.211609 + title: The formation of political discussion networks. + authors: + - Hâncean MG + - Perc M + - Gheorghiță A + - '**Vega Yon GG**' + - Mihăilă BE + publisher: Royal Society open science + date: '2022-01-26' + link: https://doi.org/10.1098/rsos.211609 + type: paper + year: 2022 +- id: doi:10.32614/cran.package.aphylo + title: 'aphylo: Statistical Inference and Prediction of Annotations in Phylogenetic + Trees' + authors: + - '**George Vega Yon**' + publisher: 'CRAN: Contributed Packages' + date: '2022-01-21' + link: http://dx.doi.org/10.32614/cran.package.aphylo + type: paper + year: 2022 +- id: doi:10.1016/j.cegh.2022.100972 + title: Factors affecting the outcomes in patients with acute respiratory distress + syndrome in a tertiary care setting. + authors: + - '**Rashid M**' + - Ramakrishnan M + - Muthu DS + - Chandran VP + - Thunga G + - Kunhikatta V + - Shanbhag V + - Acharya RV + - Nair S + publisher: Clinical epidemiology and global health + date: '2022-01-18' + link: https://doi.org/10.1016/j.cegh.2022.100972 + type: paper + year: 2022 +- id: doi:10.1016/j.vhri.2021.11.002 + title: Expanding the Global Outreach of Consolidated Health Economic Evaluation + Reporting Standards 2022. + authors: + - '**Chaiyakunapruk N**' + - Tan CJ + publisher: Value in health regional issues + date: '2022-01-11' + link: https://doi.org/10.1016/j.vhri.2021.11.002 + type: paper + year: 2022 +- id: doi:10.1093/cid/ciab170 + title: Antibiotic Use and Presumptive Pathogens in the Veterans Affairs Healthcare + System. + authors: + - Christine Tedijanto + - McKenna Nevers + - '**Matthew H Samore**' + - Marc Lipsitch + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2022-01-07' + link: https://doi.org/10.1093/cid/ciab170 + type: paper + year: 2022 +- id: doi:10.1136/bmjopen-2021-049618 + title: 'Healthcare resource utilisation pattern and costs associated with herpes + simplex virus diagnosis and management: a systematic review.' + authors: + - Lee SWH + - Gottlieb SL + - '**Chaiyakunapruk N**' + publisher: BMJ open + date: '2022-01-04' + link: https://doi.org/10.1136/bmjopen-2021-049618 + type: paper + year: 2022 +- id: doi:10.1001/jamanetworkopen.2021.43730 + title: 'Association of Hormonal Contraceptive Use With Adverse Health Outcomes: + An Umbrella Review of Meta-analyses of Randomized Clinical Trials and Cohort Studies.' + authors: + - Brabaharan S + - Veettil SK + - Kaiser JE + - Raja Rao VR + - Wattanayingcharoenchai R + - Maharajan M + - Insin P + - Talungchit P + - Anothaisintawee T + - Thakkinstian A + - '**Chaiyakunapruk N**' + publisher: JAMA network open + date: '2022-01-04' + link: https://doi.org/10.1001/jamanetworkopen.2021.43730 + type: paper + year: 2022 +- id: doi:10.2174/1574886316666210423113916 + title: 'Prevalence and Predictors of Potentially Inappropriate Medication Use Among + Elderly Patients Using Updated Beers Criteria 2019: A Single Centered Retrospective + Analysis.' + authors: + - Chinthalapudi SS + - Cheeti S + - Bajpai A + - Deepika S + - Thunga G + - '**Rashid M**' + - Acharya RV + - Nair S + publisher: Current drug safety + date: '2022-01-01' + link: https://doi.org/10.2174/1574886316666210423113916 + type: paper + year: 2022 +- id: doi:10.2174/2772432816666210825102726 + title: 'N-Acetyl Cysteine in Rodenticide Poisoning: A Systematic Review and Meta-Analysis.' + authors: + - '**Rashid M**' + - Chandran VP + - Nair S + - Muthu DS + - Pappuraj J + - Jacob KA + - Sridhar B + - Mark K + - Hyder S + - Khan S + - Thunga G + publisher: Current reviews in clinical and experimental pharmacology + date: '2022-01-01' + link: https://doi.org/10.2174/2772432816666210825102726 + type: paper + year: 2022 +- id: doi:10.2174/1573399817666210902144539 + title: 'Effect of Vitamin D Supplementation in Type 2 Diabetes Patients with Tuberculosis: + A Systematic Review.' + authors: + - Patel DG + - Kurian SJ + - Miraj SS + - '**Rashid M**' + - Thomas L + - Rodrigues GS + - Banerjee M + - Khandelwal B + - Saravu K + - Rao M + publisher: Current diabetes reviews + date: '2022-01-01' + link: https://doi.org/10.2174/1573399817666210902144539 + type: paper + year: 2022 +- id: doi:10.1080/13696998.2022.2083347 + title: Does meta-analysis of economic evaluations have the potential to play a role + in healthcare decision-making in the United States? + authors: + - Veettil SK + - Syeed MS + - Noviyan R + - Thakkinstian A + - '**Chaiyakunapruk N**' + publisher: Journal of medical economics + date: '2022-01-01' + link: https://doi.org/10.1080/13696998.2022.2083347 + type: paper + year: 2022 +- id: doi:10.1016/j.jval.2021.10.008 + title: 'Consolidated Health Economic Evaluation Reporting Standards (CHEERS) 2022 + Explanation and Elaboration: A Report of the ISPOR CHEERS II Good Practices Task + Force' + authors: + - Husereau D + - Drummond M + - Augustovski F + - de Bekker-Grob E + - Briggs AH + - Carswell C + - Caulley L + - '**Chaiyakunapruk N**' + - Greenberg D + - Loder E + - Mauskopf J + - Mullins CD + - Petrou S + - Pwu RF + - Staniszewska S + publisher: Value in Health + date: '2022-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85121918671&partnerID=MN8TOARS + type: paper + year: 2022 +- id: doi:10.1038/s41591-021-01669-z + title: 'Author Correction: The impact of school opening model on SARS-CoV-2 community + incidence and mortality.' + authors: + - Ertem Z + - Schechter-Perkins EM + - Oster E + - van den Berg P + - Epshtein I + - '**Chaiyakunapruk N**' + - Wilson FA + - Perencevich E + - Pettey WBP + - Branch-Elliman W + - '**Nelson RE**' + publisher: Nature medicine + date: '2022-01-01' + link: https://doi.org/10.1038/s41591-021-01669-z + type: paper + year: 2022 +- id: insightnet:5867b325d105f783f98c + title: A MODEL OF VIRUS INFECTION WITH IMMUNE RESPONSES SUPPORTS BOOSTING CTL RESPONSE + TO BALANCE ANTIBODY RESPONSE + authors: [] + publisher: arXiv + date: '2022-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85124781412&partnerID=MN8TOARS + type: preprint + year: 2022 +- id: doi:10.1109/tvcg.2021.3114766 + title: 'Loon: Using Exemplars to Visualize Large-Scale Microscopy Data.' + authors: + - Lange D + - Polanco E + - Judson-Torres R + - Zangle T + - '**Lex A**' + publisher: IEEE transactions on visualization and computer graphics + date: '2021-12-24' + link: https://doi.org/10.1109/tvcg.2021.3114766 + type: paper + year: 2021 +- id: doi:10.1016/j.jaad.2021.12.012 + title: 'From the Cochrane Library: Systemic treatments for eczema, a network meta-analysis.' + authors: + - Guo S + - Donaldson M + - Ortega-Loayza AG + - Sawangjit R + - '**Chaiyakunapruk N**' + - Adler BL + publisher: Journal of the American Academy of Dermatology + date: '2021-12-14' + link: https://doi.org/10.1016/j.jaad.2021.12.012 + type: paper + year: 2021 +- id: doi:10.3389/fphar.2021.786596 + title: 'Coffee Consumption and Non-alcoholic Fatty Liver Disease: An Umbrella Review + and a Systematic Review and Meta-analysis.' + authors: + - Kositamongkol C + - Kanchanasurakit S + - Auttamalang C + - Inchai N + - Kabkaew T + - Kitpark S + - '**Chaiyakunapruk N**' + - Duangjai A + - Saokaew S + - Phisalprapa P + publisher: Frontiers in pharmacology + date: '2021-12-13' + link: https://doi.org/10.3389/fphar.2021.786596 + type: paper + year: 2021 +- id: doi:10.1016/j.lana.2021.100138 + title: 'Strategies to minimize inequity in COVID-19 vaccine access in the US: Implications + for future vaccine rollouts.' + authors: + - Anindit Chhibber + - Aditi Kharat + - '**Khanh Duong**' + - '**Richard E Nelson**' + - '**Matthew H Samore**' + - Fernando A Wilson + - '**Nathorn Chaiyakunapruk**' + publisher: Lancet regional health. Americas + date: '2021-12-08' + link: https://doi.org/10.1016/j.lana.2021.100138 + type: paper + year: 2021 +- id: doi:10.1101/2021.12.05.471310 + title: An ACE2-dependent Sarbecovirus in Russian bats is resistant to SARS-CoV-2 + vaccines + authors: + - '**Seifert SN**' + - Bai S + - Fawcett S + - Norton EB + - Zwezdaryk KJ + - Robinson J + - Gunn B + - Letko MC + publisher: bioRxiv + date: '2021-12-07' + link: https://doi.org/10.1101/2021.12.05.471310 + type: preprint + year: 2021 +- id: doi:10.1093/cid/ciaa973 + title: Parainfluenza Virus Types 1-3 Infections Among Children and Adults Hospitalized + With Community-acquired Pneumonia. + authors: + - Leigh M Howard + - Kathryn M Edwards + - Yuwei Zhu + - Derek J Williams + - Wesley H Self + - Seema Jain + - Krow Ampofo + - '**Andrew T Pavia**' + - Sandra R Arnold + - Jonathan A McCullers + - Evan J Anderson + - Richard G Wunderink + - Carlos G Grijalva + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-12-06' + link: https://doi.org/10.1093/cid/ciaa973 + type: paper + year: 2021 +- id: doi:10.3390/v13122450 + title: Modelling Mutation in Equine Infectious Anemia Virus Infection Suggests a + Path to Viral Clearance with Repeated Vaccination. + authors: + - '**Schwartz EJ**' + - Costris-Vas C + - Smith SR + publisher: Viruses + date: '2021-12-06' + link: https://doi.org/10.3390/v13122450 + type: paper + year: 2021 +- id: doi:10.3389/fphar.2021.784712 + title: Meta-Analysis of NUDT15 Genetic Polymorphism on Thiopurine-Induced Myelosuppression + in Asian Populations. + authors: + - Khaeso K + - Udayachalerm S + - Komvilaisak P + - Chainansamit SO + - Suwannaying K + - Laoaroon N + - Kuwatjanakul P + - Nakkam N + - Sukasem C + - Puangpetch A + - Tassaneeyakul W + - '**Chaiyakunapruk N**' + publisher: Frontiers in pharmacology + date: '2021-12-02' + link: https://doi.org/10.3389/fphar.2021.784712 + type: paper + year: 2021 +- id: doi:10.1111/evo.14397 + title: Estimation of the strength of mate preference from mated pairs observed in + the wild. + authors: + - '**Clancey E**' + - Johnson TR + - Harmon LJ + - Hohenlohe PA + publisher: Evolution; international journal of organic evolution + date: '2021-12-02' + link: https://doi.org/10.1111/evo.14397 + type: paper + year: 2021 +- id: doi:10.1055/s-0041-1740237 + title: Directly Measured Costs of Severe Maternal Morbidity Events during Delivery + Admission Compared with Uncomplicated Deliveries. + authors: + - Michelle P Debbink + - Torri D Metz + - '**Richard E Nelson**' + - Sophie E Janes + - Alexandra Kroes + - Lori J Begaye + - Cara C Heuser + - Marcela C Smid + - Robert M Silver + - Michael W Varner + - Brett D Einerson + publisher: American journal of perinatology + date: '2021-12-02' + link: https://doi.org/10.1055/s-0041-1740237 + type: paper + year: 2021 +- id: doi:10.1097/sla.0000000000003658 + title: 'Persistent Opioid Use After Combat Injury and Subsequent Long-term Risk + of Abuse: A Retrospective Cohort Study.' + authors: + - Beyer CA + - Poltavskiy E + - Walker LE + - Pettey W + - Suo Y + - '**Redd A**' + - Rittel AG + - Kazanis WH + - Dunham JR + - Zarzabal LA + - Rutter WC + - Sim A + - Watrous JR + - Howard JT + - Janak JC + - Stewart IJ + - Gundlapalli A + publisher: Annals of surgery + date: '2021-12-01' + link: https://doi.org/10.1097/sla.0000000000003658 + type: paper + year: 2021 +- id: doi:10.1287/mnsc.2020.3895 + title: 'Employee Responses to Compensation Changes: Evidence from a Sales Firm' + authors: + - Jason Sandvik + - Richard Saouma + - '**Nathan Seegert**' + - Christopher Stanton + publisher: Management Science + date: '2021-12-01' + link: https://doi.org/10.1287/mnsc.2020.3895 + type: paper + year: 2021 +- id: doi:10.1001/jamanetworkopen.2021.40906 + title: Analysis of Vaccine Effectiveness Against COVID-19 and the Emergence of Delta + and Other Variants of Concern in Utah. + authors: + - '**Keegan LT**' + - Truelove S + - Lessler J + publisher: JAMA network open + date: '2021-12-01' + link: https://doi.org/10.1001/jamanetworkopen.2021.40906 + type: paper + year: 2021 + group: featured + image: images/Keegan_VE.png +- id: doi:10.1016/j.cct.2021.106634 + title: Protocol for the models of primary osteoporosis screening in men (MOPS) cluster + randomized trial. + authors: + - Cathleen S Colón-Emeric + - Richard Lee + - Carl F Pieper + - Kenneth W Lyles + - Leah L Zullig + - '**Richard E Nelson**' + - Katina Robinson + - Ivuoma Igwe + - Jyotsna Jadhav + - Robert A Adler + publisher: Contemporary clinical trials + date: '2021-11-27' + link: https://doi.org/10.1016/j.cct.2021.106634 + type: paper + year: 2021 +- id: doi:10.1038/s41564-021-00999-5 + title: The science of the host-virus network. + authors: + - Albery GF + - Becker DJ + - Brierley L + - Brook CE + - Christofferson RC + - Cohen LE + - Dallas TA + - Eskew EA + - Fagre A + - Farrell MJ + - Glennon E + - Guth S + - Joseph MB + - Mollentze N + - Neely BA + - Poisot T + - Rasmussen AL + - Ryan SJ + - '**Seifert S**' + - Sjodin AR + - Sorrell EM + - Carlson CJ + publisher: Nature microbiology + date: '2021-11-24' + link: https://doi.org/10.1038/s41564-021-00999-5 + type: paper + year: 2021 +- id: doi:10.2217/pgs-2021-0126 + title: 'The association between HLA-B*15:02 and phenytoin-induced severe cutaneous + adverse reactions: a meta-analysis.' + authors: + - Phung TH + - '**Cong Duong KN**' + - Junio Gloria MA + - Nguyen TK + publisher: Pharmacogenomics + date: '2021-11-24' + link: https://doi.org/10.2217/pgs-2021-0126 + type: paper + year: 2021 +- id: doi:10.1016/j.vhri.2021.07.003 + title: Budget Impact of Emicizumab for Routine Prophylaxis of Bleeding Episodes + in Patients With Hemophilia A With Inhibitors. + authors: + - Watanabe AH + - Lee SWH + - Chai-Adisaksopha C + - Lim MY + - '**Chaiyakunapruk N**' + publisher: Value in health regional issues + date: '2021-11-17' + link: https://doi.org/10.1016/j.vhri.2021.07.003 + type: paper + year: 2021 +- id: doi:10.1017/ash.2021.219 + title: Survey of physician and pharmacist steward perceptions of their antibiotic + stewardship programs. + authors: + - Shana A B Burrowes + - Mari-Lynn Drainoni + - Maria Tjilos + - Jorie M Butler + - Laura J Damschroder + - Matthew Bidwell Goetz + - Karl Madaras-Kelly + - Caitlin M Reardon + - '**Matthew H Samore**' + - Jincheng Shen + - Edward Stenehjem + - Yue Zhang + - Tamar F Barlam + publisher: 'Antimicrobial stewardship & healthcare epidemiology : ASHE' + date: '2021-11-12' + link: https://doi.org/10.1017/ash.2021.219 + type: paper + year: 2021 +- id: doi:10.1371/journal.pone.0259097 + title: High variability in transmission of SARS-CoV-2 within households and implications + for control. + authors: + - '**Toth DJA**' + - Beams AB + - '**Keegan LT**' + - Zhang Y + - Greene T + - Orleans B + - Seegert N + - Looney A + - Alder SC + - '**Samore MH**' + publisher: PloS one + date: '2021-11-10' + link: https://doi.org/10.1371/journal.pone.0259097 + type: paper + year: 2021 +- id: doi:10.1101/2021.11.04.21265886 + title: The United States COVID-19 Forecast Hub dataset + authors: + - Cramer EY + - Huang Y + - Wang Y + - Ray EL + - Cornell M + - Bracher J + - Brennen A + - Rivadeneira AJC + - Gerding A + - House K + - Jayawardena D + - Kanji AH + - Khandelwal A + - Le K + - Mody V + - Mody V + - Niemi J + - Stark A + - Shah A + - Wattanchit N + - Zorn MW + - Reich NG + - US COVID-19 Forecast Hub Consortium + publisher: Scientific Data + date: '2021-11-04' + link: https://doi.org/10.1101/2021.11.04.21265886 + type: paper + year: 2021 +- id: doi:10.1158/1055-9965.epi-21-0190 + title: Age-Related Disease Risks in Younger versus Older B-Cell Non-Hodgkin's Lymphoma + Survivors. + authors: + - Ocier K + - Abdelaziz S + - Kim S + - Kim S + - Rowe K + - Snyder J + - Deshmukh VG + - Newman M + - Fraser A + - Smith KR + - Porucznik CA + - '**Shoaf K**' + - Stanford JB + - Lee CJ + - Hashibe M + publisher: 'Cancer epidemiology, biomarkers & prevention : a publication of the + American Association for Cancer Research, cosponsored by the American Society + of Preventive Oncology' + date: '2021-11-03' + link: https://doi.org/10.1158/1055-9965.epi-21-0190 + type: paper + year: 2021 +- id: doi:10.1097/aog.0000000000004571 + title: 'Transfusion Preparedness in the Labor and Delivery Unit: An Initiative to + Improve Safety and Cost.' + authors: + - Ashley E Benson + - Ryan A Metcalf + - Kelly Cail + - Mark D Rollins + - Christine M Warrick + - Dane Falkner + - Erin A S Clark + - '**Richard E Nelson**' + - Brett D Einerson + publisher: Obstetrics and gynecology + date: '2021-11-01' + link: https://doi.org/10.1097/aog.0000000000004571 + type: paper + year: 2021 +- id: doi:10.1109/mcg.2021.3115387 + title: 'Through the Looking Glass: Insights Into Visualization Pedagogy Through + Sentiment Analysis of Peer Review Text.' + authors: + - Beasley ZJ + - Friedman A + - '**Rosen P**' + publisher: IEEE computer graphics and applications + date: '2021-11-01' + link: https://doi.org/10.1109/mcg.2021.3115387 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciab177 + title: 'The Effects of Using a Clinical Prediction Rule to Prioritize Diagnostic + Testing on Transmission and Hospital Burden: A Modeling Example of Early Severe + Acute Respiratory Syndrome Coronavirus 2.' + authors: + - Reimer JR + - Ahmed SM + - Brintz BJ + - Shah RU + - '**Keegan LT**' + - Ferrari MJ + - Leung DT + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-11-01' + link: https://doi.org/10.1093/cid/ciab177 + type: paper + year: 2021 +- id: doi:10.1111/bcp.15103 + title: 'Association of proton-pump inhibitor use with adverse health outcomes: A + systematic umbrella review of meta-analyses of cohort studies and randomised controlled + trials' + authors: + - Veettil SK + - Sadoyu S + - Bald EM + - Chandran VP + - Khuu SAT + - Pitak P + - Lee YY + - Nair AB + - Antony PT + - Ford AC + - '**Chaiyakunapruk N**' + publisher: British Journal of Clinical Pharmacology + date: '2021-10-30' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85118349872&partnerID=MN8TOARS + type: paper + year: 2021 +- id: doi:10.1038/s41591-021-01563-8 + title: The impact of school opening model on SARS-CoV-2 community incidence and + mortality. + authors: + - Ertem Z + - Schechter-Perkins EM + - Oster E + - van den Berg P + - Epshtein I + - '**Chaiyakunapruk N**' + - Wilson FA + - Perencevich E + - Pettey WBP + - Branch-Elliman W + - '**Nelson RE**' + publisher: Nature medicine + date: '2021-10-27' + link: https://doi.org/10.1038/s41591-021-01563-8 + type: paper + year: 2021 +- id: doi:10.2147/clep.s335621 + title: Positive Predictive Value of COVID-19 ICD-10 Diagnosis Codes Across Calendar + Time and Clinical Setting. + authors: + - Lynch KE + - Viernes B + - Gatsby E + - DuVall SL + - Jones BE + - Box TL + - Kreisler C + - '**Jones M**' + publisher: Clinical epidemiology + date: '2021-10-27' + link: https://doi.org/10.2147/clep.s335621 + type: paper + year: 2021 +- id: doi:10.1515/jbcpp-2021-0165 + title: 'Methotrexate related cutaneous adverse drug reactions: a systematic literature + review.' + authors: + - Zuber M + - Harikrishna + - Vidhyashree + - Chhabra M + - Venkataraman R + - Kumar S + - '**Rashid M**' + publisher: Journal of basic and clinical physiology and pharmacology + date: '2021-10-27' + link: https://doi.org/10.1515/jbcpp-2021-0165 + type: paper + year: 2021 +- id: doi:10.1016/j.japh.2021.10.005 + title: Cost-effectiveness analysis of pharmacist interventions in patients with + heart failure in Thailand. + authors: + - Arunmanakul P + - '**Chaiyakunapruk N**' + - Phrommintikul A + - Ruengorn C + - Permsuwan U + publisher: 'Journal of the American Pharmacists Association : JAPhA' + date: '2021-10-11' + link: https://doi.org/10.1016/j.japh.2021.10.005 + type: paper + year: 2021 +- id: doi:10.1111/1475-6773.13880 + title: Patient selection in the Comprehensive Care for Joint Replacement model. + authors: + - Hyunkyu Ko + - Brook I Martin + - '**Richard E Nelson**' + - Christopher E Pelt + publisher: Health services research + date: '2021-10-06' + link: https://doi.org/10.1111/1475-6773.13880 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciab415 + title: Risk Factors Associated With Carbapenemase-Producing Carbapenem-Resistant + Enterobacteriaceae Positive Cultures in a Cohort of US Veterans. + authors: + - Wilson GM + - Suda KJ + - Fitzpatrick MA + - Bartle B + - Pfeiffer CD + - '**Jones M**' + - '**Rubin MA**' + - Perencevich E + - Evans M + - Evans CT + - QUERI CARRIAGE Program + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-10-01' + link: https://doi.org/10.1093/cid/ciab415 + type: paper + year: 2021 +- id: doi:10.1177/14738716211038604 + title: Predicting intent behind selections in scatterplot visualizations + authors: + - Kiran Gadhave + - Jochen Görtler + - Zach Cutler + - Carolina Nobre + - Oliver Deussen + - Miriah Meyer + - Jeff M. Phillips + - '**Alexander Lex**' + publisher: Information Visualization + date: '2021-10-01' + link: http://dx.doi.org/10.1177/14738716211038604 + type: paper + year: 2021 +- id: doi:10.1001/jamanetworkopen.2021.28385 + title: Medical Outcomes, Quality of Life, and Family Perceptions for Outpatient + vs Inpatient Neutropenia Management After Chemotherapy for Pediatric Acute Myeloid + Leukemia. + authors: + - Kelly D Getz + - '**Julia E Szymczak**' + - Yimei Li + - Rachel Madding + - Yuan-Shung V Huang + - Catherine Aftandilian + - Staci D Arnold + - Kira O Bona + - Emi Caywood + - Anderson B Collier + - M Monica Gramatges + - Meret Henry + - Craig Lotterman + - Kelly Maloney + - Amir Mian + - Rajen Mody + - Elaine Morgan + - Elizabeth A Raetz + - Jeffrey Rubnitz + - Anupam Verma + - Naomi Winick + - Jennifer J Wilkes + - Jennifer C Yu + - Brian T Fisher + - Richard Aplenc + publisher: JAMA network open + date: '2021-10-01' + link: https://doi.org/10.1001/jamanetworkopen.2021.28385 + type: paper + year: 2021 +- id: doi:10.1109/tii.2021.3060898 + title: An Adaptive Machine Learning Framework for Behind-the-Meter Load/PV Disaggregation + authors: + - Ramyar Saeedi + - Sajan K. Sadanandan + - Anurag K. Srivastava + - Kevin L. Davies + - '**Assefaw H. Gebremedhin**' + publisher: IEEE Transactions on Industrial Informatics + date: '2021-10-01' + link: https://doi.org/10.1109/TII.2021.3060898 + type: paper + year: 2021 +- id: doi:10.1017/ice.2021.393 + title: 'A Veterans'' Healthcare Administration (VHA) antibiotic stewardship intervention + to improve outpatient antibiotic use for acute respiratory infections: A cost-effectiveness + analysis.' + authors: + - Minkyoung Yoo + - Karl Madaras-Kelly + - McKenna Nevers + - Katherine E Fleming-Dutra + - Adam L Hersh + - Jian Ying + - Ben Haaland + - Matthew Samore + - '**Richard E Nelson**' + publisher: Infection control and hospital epidemiology + date: '2021-09-29' + link: https://doi.org/10.1017/ice.2021.393 + type: paper + year: 2021 +- id: doi:10.1056/nejmoa2106599 + title: Effectiveness of mRNA Covid-19 Vaccine among U.S. Health Care Personnel. + authors: + - Tamara Pilishvili + - Ryan Gierke + - Katherine E Fleming-Dutra + - Jennifer L Farrar + - Nicholas M Mohr + - David A Talan + - Anusha Krishnadasan + - Karisa K Harland + - Howard A Smithline + - Peter C Hou + - Lilly C Lee + - Stephen C Lim + - Gregory J Moran + - Elizabeth Krebs + - Mark T Steele + - David G Beiser + - Brett Faine + - John P Haran + - Utsav Nandi + - Walter A Schrading + - Brian Chinnock + - Daniel J Henning + - Frank Lovecchio + - Jane Lee + - Devra Barter + - Monica Brackney + - Scott K Fridkin + - Kaytlynn Marceaux-Galli + - Sarah Lim + - Erin C Phipps + - Ghinwa Dumyati + - Rebecca Pierce + - Tiffanie M Markus + - Deverick J Anderson + - Amanda K Debes + - Michael Y Lin + - '**Jeanmarie Mayer**' + - Jennie H Kwon + - Nasia Safdar + - Marc Fischer + - Rosalyn Singleton + - Nora Chea + - Shelley S Magill + - Jennifer R Verani + - Stephanie J Schrag + - Vaccine Effectiveness among Healthcare Personnel Study Team + publisher: The New England journal of medicine + date: '2021-09-22' + link: https://doi.org/10.1056/nejmoa2106599 + type: paper + year: 2021 +- id: doi:10.1186/s12889-021-11688-7 + title: 'Assessment of health equity consideration in masking/PPE policies to contain + COVID-19 using PROGRESS-plus framework: a systematic review.' + authors: + - Chhibber A + - Kharat A + - Kneale D + - Welch V + - Bangpan M + - '**Chaiyakunapruk N**' + publisher: BMC public health + date: '2021-09-16' + link: https://doi.org/10.1186/s12889-021-11688-7 + type: paper + year: 2021 +- id: doi:10.21203/rs.3.rs-543971/v1 + title: 'Methodological Approaches for Assessing Certainty of the Evidence in Umbrella + Reviews: a Systematic Review' + authors: + - Sadoyu S + - Tanni KA + - Punrum N + - Paengtrai S + - Lai NM + - Thakkinstian A + - Ngorsuraches S + - Bangpan M + - '**Chaiyakunapruk N**' + publisher: Research Square + date: '2021-09-14' + link: https://doi.org/10.21203/rs.3.rs-543971/v1 + type: preprint + year: 2021 +- id: doi:10.1038/s41598-021-97612-w + title: Continued need for non-pharmaceutical interventions after COVID-19 vaccination + in long-term-care facilities. + authors: + - Love J + - '**Keegan LT**' + - Angulo FJ + - McLaughlin JM + - Shea KM + - Swerdlow DL + - '**Samore MH**' + - '**Toth DJA**' + publisher: Scientific reports + date: '2021-09-10' + link: https://doi.org/10.1038/s41598-021-97612-w + type: paper + year: 2021 +- id: pmid:34506478 + title: The importance of non-pharmaceutical interventions during the COVID-19 vaccine + rollout. + authors: + - Nicolò Gozzi + - Paolo Bajardi + - Nicola Perra + publisher: PLoS computational biology + date: '2021-09-10' + link: https://www.ncbi.nlm.nih.gov/pubmed/34506478 + type: paper + group: featured + image: images/LTCF_NPI.png + plugin: sources.py + file: sources.yaml +- id: doi:10.1093/cid/ciaa1831 + title: Impact of Implementation of the Core Elements of Outpatient Antibiotic Stewardship + Within Veterans Health Administration Emergency Departments and Primary Care Clinics + on Antibiotic Prescribing and Patient Outcomes. + authors: + - Karl Madaras-Kelly + - Christopher Hostler + - Mary Townsend + - Emily M Potter + - Emily S Spivak + - Sarah K Hall + - Matthew Bidwell Goetz + - McKenna Nevers + - Jian Ying + - Benjamin Haaland + - Suzette A Rovelsky + - Benjamin Pontefract + - Katherine Fleming-Dutra + - Lauri A Hicks + - '**Matthew H Samore**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-09-07' + link: https://doi.org/10.1093/cid/ciaa1831 + type: paper + year: 2021 +- id: doi:10.1371/journal.pone.0253407 + title: Comparison of antigen- and RT-PCR-based testing strategies for detection + of SARS-CoV-2 in two high-exposure settings. + authors: + - Love J + - Wimmer MT + - '**Toth DJA**' + - Chandran A + - Makhija D + - Cooper CK + - '**Samore MH**' + - '**Keegan LT**' + publisher: PloS one + date: '2021-09-07' + link: https://doi.org/10.1371/journal.pone.0253407 + type: paper + year: 2021 +- id: pmid:34492025 + title: Comparison of antigen- and RT-PCR-based testing strategies for detection + of SARS-CoV-2 in two high-exposure settings. + authors: + - Jay Love + - Megan T Wimmer + - Damon J A Toth + - Arthi Chandran + - Dilip Makhija + - Charles K Cooper + - Matthew H Samore + - Lindsay T Keegan + publisher: PloS one + date: '2021-09-07' + link: https://www.ncbi.nlm.nih.gov/pubmed/34492025 + type: paper + group: featured + image: images/Wimmer_Model.png + plugin: sources.py + file: sources.yaml +- id: doi:10.1111/1755-0998.13495 + title: 'MrIML: Multi-response interpretable machine learning to model genomic landscapes.' + authors: + - Fountain-Jones NM + - Kozakiewicz CP + - Forester BR + - '**Landguth EL**' + - Carver S + - Charleston M + - Gagne RB + - Greenwell B + - Kraberger S + - Trumbo DR + - Mayer M + - Clark NJ + - Machado G + publisher: Molecular ecology resources + date: '2021-09-06' + link: https://doi.org/10.1111/1755-0998.13495 + type: paper + year: 2021 +- id: doi:10.1001/jamanetworkopen.2021.23950 + title: Temporal Trends and Hospital Variation in Time-to-Antibiotics Among Veterans + Hospitalized With Sepsis. + authors: + - Wayne MT + - Seelye S + - Molling D + - Wang XQ + - Donnelly JP + - Hogan CK + - '**Jones MM**' + - Iwashyna TJ + - Liu VX + - Prescott HC + publisher: JAMA network open + date: '2021-09-01' + link: https://doi.org/10.1001/jamanetworkopen.2021.23950 + type: paper + year: 2021 +- id: doi:10.1371/journal.pone.0256814 + title: 'Effectiveness of blended learning in pharmacy education: An experimental + study using clinical research modules.' + authors: + - Balakrishnan A + - Nair S + - Kunhikatta V + - '**Rashid M**' + - Unnikrishnan MK + - Jagannatha PS + - Chandran VP + - Khera K + - Thunga G + publisher: PloS one + date: '2021-09-01' + link: https://doi.org/10.1371/journal.pone.0256814 + type: paper + year: 2021 +- id: doi:10.1016/j.jbi.2021.103903 + title: 'ReHouSED: A novel measurement of Veteran housing stability using natural + language processing.' + authors: + - Chapman AB + - Jones A + - Kelley AT + - Jones B + - Gawron L + - Montgomery AE + - Byrne T + - Suo Y + - Cook J + - Pettey W + - Peterson K + - '**Jones M**' + - Nelson R + publisher: Journal of biomedical informatics + date: '2021-08-30' + link: https://doi.org/10.1016/j.jbi.2021.103903 + type: paper + year: 2021 +- id: doi:10.2106/jbjs.20.02126 + title: 'Optimizing Costs and Outcomes for Carpal Tunnel Release Surgery: A Cost-Effectiveness + Analysis from Societal and Health-Care System Perspectives.' + authors: + - Rogers MJ + - Stephens AR + - Yoo M + - '**Nelson RE**' + - Kazmers NH + publisher: The Journal of bone and joint surgery. American volume + date: '2021-08-24' + link: https://doi.org/10.2106/jbjs.20.02126 + type: paper + year: 2021 +- id: doi:10.3389/fmed.2021.723790 + title: 'Effects of Telemedicine on Obese Patients With Non-alcoholic Fatty Liver + Disease: A Systematic Review and Meta-Analysis.' + authors: + - Saokaew S + - Kanchanasurakit S + - Kositamongkol C + - Chaiyo K + - Jirapisut T + - Aomsin N + - Leewongsakorn P + - '**Chaiyakunapruk N**' + - Phisalprapa P + publisher: Frontiers in medicine + date: '2021-08-19' + link: https://doi.org/10.3389/fmed.2021.723790 + type: paper + year: 2021 +- id: doi:10.21105/joss.03456 + title: Building, Importing, and Exporting GEXF Graph Files with rgexf + authors: + - '**George Yon**' + publisher: Journal of Open Source Software + date: '2021-08-12' + link: https://doi.org/10.21105/joss.03456 + type: paper + year: 2021 +- id: doi:10.3390/ijerph18168260 + title: Excess Risk of COVID-19 to University Populations Resulting from In-Person + Sporting Events. + authors: + - Johnson SS + - Jackson KC + - Mietchen MS + - Sbai S + - '**Schwartz EJ**' + - '**Lofgren ET**' + publisher: International journal of environmental research and public health + date: '2021-08-04' + link: https://doi.org/10.3390/ijerph18168260 + type: paper + year: 2021 + group: featured + image: images/sporting_sir.png +- id: doi:10.1111/ijcp.14645 + title: 'Efficacy and safety of corticosteroids in acute respiratory distress syndrome: + An overview of meta-analyses.' + authors: + - '**Rashid M**' + - Khan S + - Datta D + - Thunga G + - Chandran VP + - Balakrishnan A + - Shanbhag V + - Acharya RV + - Nair S + publisher: International journal of clinical practice + date: '2021-08-04' + link: https://doi.org/10.1111/ijcp.14645 + type: paper + year: 2021 +- id: doi:10.1001/jamanetworkopen.2021.19580 + title: Was In-Person Attendance at Major College and Professional Football Games + in 2020 the Right Call? + authors: + - '**Michael A Rubin**' + publisher: JAMA network open + date: '2021-08-02' + link: https://doi.org/10.1001/jamanetworkopen.2021.19580 + type: paper + year: 2021 +- id: doi:10.1109/ichi52183.2021.00048 + title: Topic-to-Topic Modeling for COVID-19 Mortality + authors: + - Jeffrey Humpherys + - Ahmad Halwani + - Barbara E Jones + - '**Makoto M Jones**' + - Matthew H Samore + - Sadiqa Mahmood + - Dale Sanders + publisher: 2021 IEEE 9TH INTERNATIONAL CONFERENCE ON HEALTHCARE INFORMATICS (ICHI + 2021) + date: '2021-08-01' + link: https://doi.org/10.1109/ichi52183.2021.00048 + type: paper + year: 2021 +- id: doi:10.1109/tlt.2021.3102184 + title: 'Polarity in the Classroom: A Case Study Leveraging Peer Sentiment Toward + Scalable Assessment' + authors: + - Zachariah J. Beasley + - Les A. Piegl + - '**Paul Rosen**' + publisher: IEEE Transactions on Learning Technologies + date: '2021-08-01' + link: https://doi.org/10.1109/TLT.2021.3102184 + type: paper + year: 2021 +- id: doi:10.1097/qco.0000000000000742 + title: Modeling transmission of pathogens in healthcare settings. + authors: + - Stachel A + - '**Keegan LT**' + - Blumberg S + - CDC MInD Healthcare Program + publisher: Current opinion in infectious diseases + date: '2021-08-01' + link: https://doi.org/10.1097/qco.0000000000000742 + type: paper + year: 2021 +- id: doi:10.1109/bhi50953.2021.9508508 + title: A Knowledge Network-Based Approach to Facilitate Annotation of Clinical Pathway + Component Clusters + authors: + - S.M. Shamimul Hasan + - Minsu Kim + - Byung H. Park + - '**Makoto M. Jones**' + - Merry Ward + - Jonathan Nebeker + publisher: 2021 IEEE EMBS International Conference on Biomedical and Health Informatics + (BHI) + date: '2021-07-27' + link: https://doi.org/10.1109/bhi50953.2021.9508508 + type: paper + year: 2021 +- id: doi:10.3390/v13071389 + title: Ecological Approach to Understanding Superinfection Inhibition in Bacteriophage. + authors: + - Biggs KRH + - Bailes CL + - Scott L + - Wichman HA + - '**Schwartz EJ**' + publisher: Viruses + date: '2021-07-17' + link: https://doi.org/10.3390/v13071389 + type: paper + year: 2021 +- id: doi:10.1177/14738716211028565 + title: 'Sanguine: Visual analysis for patient blood management' + authors: + - Haihan Lin + - Ryan A Metcalf + - Jack Wilburn + - '**Alexander Lex**' + publisher: Information Visualization + date: '2021-07-01' + link: https://doi.org/10.1177/14738716211028565 + type: paper + year: 2021 +- id: doi:10.1097/pcc.0000000000002774 + title: 'Neurologic Manifestations of COVID-19 in Children: Emerging Pathophysiologic + Insights.' + authors: + - Michelle E Schober + - '**Andrew T Pavia**' + - John F Bohnsack + publisher: 'Pediatric critical care medicine : a journal of the Society of Critical + Care Medicine and the World Federation of Pediatric Intensive and Critical Care + Societies' + date: '2021-07-01' + link: https://doi.org/10.1097/pcc.0000000000002774 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa750 + title: Haemophilus influenzae Serotype a (Hia) Carriage in a Small Alaska Community + After a Cluster of Invasive Hia Disease, 2018. + authors: + - '**Nolen LD**' + - Tiffany A + - DeByle C + - Bruden D + - Thompson G + - Reasonover A + - Hurlburt D + - Mosites E + - Simons BC + - Klejka J + - Castrodale L + - McLaughlin J + - Bruce MG + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-07-01' + link: https://doi.org/10.1093/cid/ciaa750 + type: paper + year: 2021 +- id: doi:10.1513/annalsats.202011-1372oc + title: Computerized Mortality Prediction for Community-acquired Pneumonia at 117 + Veterans Affairs Medical Centers. + authors: + - Jones BE + - Ying J + - Nevers M + - Alba PR + - He T + - Patterson OV + - '**Jones MM**' + - Stevens V + - Shen J + - Humpherys J + - Peterson KS + - Rutter ED + - Gundlapalli AV + - Weir CR + - Dean NC + - Fine MJ + - Samore MC + - Greene TH + publisher: Annals of the American Thoracic Society + date: '2021-07-01' + link: https://doi.org/10.1513/annalsats.202011-1372oc + type: paper + year: 2021 +- id: doi:10.14309/ctg.0000000000000374 + title: Gastric Cancer in Alaska Native and American Indian People Living in Alaska, + 1990-2017. + authors: + - '**Nolen LD**' + - Bressler S + - Vindigni SM + - Miller K + - Nash S + publisher: Clinical and translational gastroenterology + date: '2021-06-23' + link: https://doi.org/10.14309/ctg.0000000000000374 + type: paper + year: 2021 +- id: doi:10.1515/jbcpp-2020-0218 + title: 'Pattern, severity, and outcome of adverse drug reactions in a tertiary care + hospital: an evidence from a cross-sectional study.' + authors: + - Chhabra M + - Jangra MS + - '**Rashid M**' + - Sharma P + - Vidyasagar K + publisher: Journal of basic and clinical physiology and pharmacology + date: '2021-06-21' + link: https://doi.org/10.1515/jbcpp-2020-0218 + type: paper + year: 2021 +- id: doi:10.1371/journal.pone.0252461 + title: 'Effectiveness of blended learning in pharmacy education: A systematic review + and meta-analysis.' + authors: + - Balakrishnan A + - Puthean S + - Satheesh G + - M K U + - '**Rashid M**' + - Nair S + - Thunga G + publisher: PloS one + date: '2021-06-17' + link: https://doi.org/10.1371/journal.pone.0252461 + type: paper + year: 2021 +- id: doi:10.32614/cran.package.netplot + title: 'netplot: Beautiful Graph Drawing' + authors: + - '**George Vega Yon**' + - Porter Bischoff + publisher: 'CRAN: Contributed Packages' + date: '2021-06-16' + link: http://dx.doi.org/10.32614/cran.package.netplot + type: paper + year: 2021 +- id: doi:10.1098/rsif.2021.0155 + title: Efficient and effective single-step screening of individual samples for SARS-CoV-2 + RNA using multi-dimensional pooling and Bayesian inference. + authors: + - Juliana Sobczyk + - Michael T Pyne + - Adam Barker + - '**Jeanmarie Mayer**' + - Kimberly E Hanson + - '**Matthew H Samore**' + - Rodrigo Noriega + publisher: Journal of the Royal Society, Interface + date: '2021-06-16' + link: https://doi.org/10.1098/rsif.2021.0155 + type: paper + year: 2021 +- id: doi:10.2337/dc21-0292 + title: Increased Hemoglobin A1c Time in Range Reduces Adverse Health Outcomes in + Older Adults With Diabetes. + authors: + - Julia C Prentice + - David C Mohr + - Libin Zhang + - Donglin Li + - Aaron Legler + - '**Richard E Nelson**' + - Paul R Conlin + publisher: Diabetes care + date: '2021-06-14' + link: https://doi.org/10.2337/dc21-0292 + type: paper + year: 2021 +- id: doi:10.1017/ice.2021.239 + title: 'Nonventilator hospital-acquired pneumonia: A call to action.' + authors: + - Shannon C Munro + - Dian Baker + - Karen K Giuliano + - Sheila C Sullivan + - Judith Haber + - Barbara E Jones + - Matthew B Crist + - '**Richard E Nelson**' + - Evan Carey + - Olivia Lounsbury + - Michelle Lucatorto + - Ryan Miller + - Brian Pauley + - Michael Klompas + publisher: Infection control and hospital epidemiology + date: '2021-06-09' + link: https://doi.org/10.1017/ice.2021.239 + type: paper + year: 2021 +- id: doi:10.1016/j.surg.2021.04.027 + title: Natural language processing for the surveillance of postoperative venous + thromboembolism. + authors: + - Jianlin Shi + - John F Hurdle + - Stacy A Johnson + - Jeffrey P Ferraro + - David E Skarda + - Samuel R G Finlayson + - '**Matthew H Samore**' + - Brian T Bucher + publisher: Surgery + date: '2021-06-03' + link: https://doi.org/10.1016/j.surg.2021.04.027 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1328 + title: Impact of Social Distancing and Travel Restrictions on Non-Coronavirus Disease + 2019 (Non-COVID-19) Respiratory Hospital Admissions in Young Children in Rural + Alaska. + authors: + - '**Nolen LD**' + - Seeman S + - Bruden D + - Klejka J + - Desnoyers C + - Tiesinga J + - Singleton R + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-06-01' + link: https://doi.org/10.1093/cid/ciaa1328 + type: paper + year: 2021 +- id: doi:10.15585/mmwr.mm7020e2 + title: Interim Estimates of Vaccine Effectiveness of Pfizer-BioNTech and Moderna + COVID-19 Vaccines Among Health Care Personnel - 33 U.S. Sites, January-March 2021. + authors: + - Tamara Pilishvili + - Katherine E Fleming-Dutra + - Jennifer L Farrar + - Ryan Gierke + - Nicholas M Mohr + - David A Talan + - Anusha Krishnadasan + - Karisa K Harland + - Howard A Smithline + - Peter C Hou + - Lilly C Lee + - Stephen C Lim + - Gregory J Moran + - Elizabeth Krebs + - Mark Steele + - David G Beiser + - Brett Faine + - John P Haran + - Utsav Nandi + - Walter A Schrading + - Brian Chinnock + - Daniel J Henning + - Frank LoVecchio + - Joelle Nadle + - Devra Barter + - Monica Brackney + - Amber Britton + - Kaytlynn Marceaux-Galli + - Sarah Lim + - Erin C Phipps + - Ghinwa Dumyati + - Rebecca Pierce + - Tiffanie M Markus + - Deverick J Anderson + - Amanda K Debes + - Michael Lin + - '**Jeanmarie Mayer**' + - Hilary M Babcock + - Nasia Safdar + - Marc Fischer + - Rosalyn Singleton + - Nora Chea + - Shelley S Magill + - Jennifer Verani + - Stephanie Schrag + - Vaccine Effectiveness Among Healthcare Personnel Study Team + publisher: MMWR. Morbidity and mortality weekly report + date: '2021-05-21' + link: https://doi.org/10.15585/mmwr.mm7020e2 + type: paper + year: 2021 +- id: doi:10.3389/fphar.2021.685518 + title: 'Prevalence of Polypharmacy, Hyperpolypharmacy and Potentially Inappropriate + Medication Use in Older Adults in India: A Systematic Review and Meta-Analysis.' + authors: + - Bhagavathula AS + - Vidyasagar K + - Chhabra M + - '**Rashid M**' + - Sharma R + - Bandari DK + - Fialova D + publisher: Frontiers in pharmacology + date: '2021-05-19' + link: https://doi.org/10.3389/fphar.2021.685518 + type: paper + year: 2021 +- id: doi:10.1017/ice.2021.32 + title: Reporting uncertainty in results-Response to article on copper cold-spray + technology. + authors: + - Piyali Chatterjee + - John D Coppin + - Marjory D Williams + - Hosoon Choi + - John E Zeber + - '**Richard E Nelson**' + - Chetan Jinadatha + publisher: Infection control and hospital epidemiology + date: '2021-05-18' + link: https://doi.org/10.1017/ice.2021.32 + type: paper + year: 2021 +- id: doi:10.15585/mmwr.mm7019e3 + title: Modeling of Future COVID-19 Cases, Hospitalizations, and Deaths, by Vaccination + Rates and Nonpharmaceutical Intervention Scenarios - United States, April-September + 2021. + authors: + - Borchering RK + - Viboud C + - Howerton E + - Smith CP + - Truelove S + - Runge MC + - Reich NG + - Contamin L + - Levander J + - Salerno J + - van Panhuis W + - Kinsey M + - Tallaksen K + - Obrecht RF + - Asher L + - Costello C + - Kelbaugh M + - Wilson S + - Shin L + - Gallagher ME + - Mullany LC + - Rainwater-Lovett K + - Lemaitre JC + - Dent J + - Grantz KH + - Kaminsky J + - Lauer SA + - Lee EC + - Meredith HR + - Perez-Saez J + - '**Keegan LT**' + - Karlen D + - Chinazzi M + - Davis JT + - Mu K + - Xiong X + - Pastore Y Piontti A + - Vespignani A + - Srivastava A + - Porebski P + - Venkatramanan S + - Adiga A + - Lewis B + - Klahn B + - Outten J + - Schlitt J + - Corbett P + - Telionis PA + - Wang L + - Peddireddy AS + - Hurt B + - Chen J + - Vullikanti A + - Marathe M + - Healy JM + - Slayton RB + - Biggerstaff M + - Johansson MA + - Shea K + - Lessler J + publisher: MMWR. Morbidity and mortality weekly report + date: '2021-05-14' + link: https://doi.org/10.15585/mmwr.mm7019e3 + type: paper + year: 2021 +- id: doi:10.1002/cam4.3934 + title: Cardiovascular disease risks in younger versus older adult B-cell non-Hodgkin's + lymphoma survivors. + authors: + - Krista Ocier + - Sarah Abdelaziz + - Seungmin Kim + - Kerry Rowe + - John Snyder + - Vikrant Deshmukh + - Michael Newman + - Alison Fraser + - Ken Smith + - Christina A Porucznik + - '**Kimberley Shoaf**' + - Joseph B Stanford + - Catherine J Lee + - Mia Hashibe + publisher: Cancer medicine + date: '2021-05-12' + link: https://doi.org/10.1002/cam4.3934 + type: paper + year: 2021 +- id: doi:10.31219/osf.io/cbw36 + title: 'reVISit: Looking Under the Hood of Interactive Visualization Studies' + authors: + - Carolina Nobre + - Dylan Wootton + - Zach Cutler + - Lane Harrison + - Hanspeter Pfister + - '**Alexander Lex**' + publisher: Proceedings of the 2021 CHI Conference on Human Factors in Computing + Systems + date: '2021-05-06' + link: http://dx.doi.org/10.1145/3411764.3445382 + type: paper + year: 2021 +- id: doi:10.1377/hlthaff.2020.01796 + title: Temporary Financial Assistance Decreased Health Care Costs For Veterans Experiencing + Housing Instability. + authors: + - '**Richard E Nelson**' + - Ann Elizabeth Montgomery + - Ying Suo + - James Cook + - Warren Pettey + - Adi Gundlapalli + - Tom Greene + - William Evans + - Lillian Gelberg + - Stefan G Kertesz + - Jack Tsai + - Thomas H Byrne + publisher: Health affairs (Project Hope) + date: '2021-05-01' + link: https://doi.org/10.1377/hlthaff.2020.01796 + type: paper + year: 2021 +- id: doi:10.3201/eid2705.203075 + title: Coordinated Strategy for a Model-Based Decision Support Tool for Coronavirus + Disease, Utah, USA. + authors: + - Meredith HR + - Arehart E + - Grantz KH + - Beams A + - Sheets T + - Nelson R + - Zhang Y + - Vinik RG + - Barfuss D + - Pettit JC + - McCaffrey K + - Dunn AC + - Good M + - Frattaroli S + - Samore MH + - Lessler J + - Lee EC + - '**Keegan LT**' + publisher: Emerging infectious diseases + date: '2021-05-01' + link: https://doi.org/10.3201/eid2705.203075 + type: paper + year: 2021 +- id: pmid:33900179 + title: Coordinated Strategy for a Model-Based Decision Support Tool for Coronavirus + Disease, Utah, USA. + authors: + - Hannah R Meredith + - Emerson Arehart + - Kyra H Grantz + - Alexander Beams + - Theresa Sheets + - Richard Nelson + - Yue Zhang + - Russell G Vinik + - Darryl Barfuss + - Jacob C Pettit + - Keegan McCaffrey + - Angela C Dunn + - Michael Good + - Shannon Frattaroli + - Matthew H Samore + - Justin Lessler + - Elizabeth C Lee + - Lindsay T Keegan + publisher: Emerging infectious diseases + date: '2021-05-01' + link: https://www.ncbi.nlm.nih.gov/pubmed/33900179 + type: paper + group: featured + image: images/ScenaroModelingUtah.png + plugin: sources.py + file: sources.yaml +- id: doi:10.1371/journal.pone.0248080 + title: Angiotensin II receptor blocker or angiotensin-converting enzyme inhibitor + use and COVID-19-related outcomes among US Veterans. + authors: + - Catherine G Derington + - Jordana B Cohen + - April F Mohanty + - Tom H Greene + - James Cook + - Jian Ying + - Guo Wei + - Jennifer S Herrick + - Vanessa W Stevens + - Barbara E Jones + - Libo Wang + - Alexander R Zheutlin + - Andrew M South + - Thomas C Hanff + - Steven M Smith + - Rhonda M Cooper-DeHoff + - Jordan B King + - G Caleb Alexander + - Dan R Berlowitz + - Faraz S Ahmad + - M Jason Penrod + - Rachel Hess + - Molly B Conroy + - James C Fang + - '**Michael A Rubin**' + - Srinivasan Beddhu + - Alfred K Cheung + - Weiming Xian + - William S Weintraub + - Adam P Bress + publisher: PloS one + date: '2021-04-23' + link: https://doi.org/10.1371/journal.pone.0248080 + type: paper + year: 2021 +- id: doi:10.20944/preprints202104.0200.v1 + title: Zoonotic Risk Technology Enters the Viral Emergence Toolkit + authors: + - Carlson C + - Farrell M + - Grange Z + - Han B + - Mollentze N + - Phelan A + - Rasmussen A + - Albery G + - Bett B + - Brett-Major D + - Cohen L + - Dallas T + - Eskew E + - Fagre A + - Forbes K + - Gibb R + - Halabi S + - Hammer C + - Katz R + - Kindrachuk J + - Muylaert R + - Nutter F + - Ogola J + - Olival K + - Rourke M + - Ryan S + - Ross N + - '**Seifert S**' + - Sironen T + - Standley C + - Taylor K + - Venter M + - Webala P + publisher: '' + date: '2021-04-07' + link: https://doi.org/10.20944/preprints202104.0200.v1 + type: paper + year: 2021 +- id: doi:10.1161/jaha.120.019254 + title: Factors Associated With PCSK9 Inhibitor Initiation Among US Veterans. + authors: + - Catherine G Derington + - Lisandro D Colantonio + - Jennifer S Herrick + - James Cook + - Jordan B King + - Robert S Rosenson + - Bharat Poudel + - Keri L Monda + - Ann Marie Navar + - Katherine E Mues + - Vanessa W Stevens + - '**Richard E Nelson**' + - Megan E Vanneman + - Paul Muntner + - Adam P Bress + publisher: Journal of the American Heart Association + date: '2021-04-06' + link: https://doi.org/10.1161/jaha.120.019254 + type: paper + year: 2021 +- id: doi:10.1038/s41598-021-86811-0 + title: A scenario modeling pipeline for COVID-19 emergency planning. + authors: + - Lemaitre JC + - Grantz KH + - Kaminsky J + - Meredith HR + - Truelove SA + - Lauer SA + - '**Keegan LT**' + - Shah S + - Wills J + - Kaminsky K + - Perez-Saez J + - Lessler J + - Lee EC + publisher: Scientific reports + date: '2021-04-06' + link: https://doi.org/10.1038/s41598-021-86811-0 + type: paper + year: 2021 +- id: pmid:33824358 + title: A scenario modeling pipeline for COVID-19 emergency planning. + authors: + - Joseph C Lemaitre + - Kyra H Grantz + - Joshua Kaminsky + - Hannah R Meredith + - Shaun A Truelove + - Stephen A Lauer + - Lindsay T Keegan + - Sam Shah + - Josh Wills + - Kathryn Kaminsky + - Javier Perez-Saez + - Justin Lessler + - Elizabeth C Lee + publisher: Scientific reports + date: '2021-04-06' + link: https://www.ncbi.nlm.nih.gov/pubmed/33824358 + type: paper + group: featured + image: images/ScenarioModel.png + plugin: sources.py + file: sources.yaml +- id: doi:10.3390/v13040592 + title: Limited Genetic Diversity Detected in Middle East Respiratory Syndrome-Related + Coronavirus Variants Circulating in Dromedary Camels in Jordan. + authors: + - '**Seifert SN**' + - Schulz JE + - Ricklefs S + - Letko M + - Yabba E + - Hijazeen ZS + - Holloway P + - Al-Omari B + - Talafha HA + - Tibbo M + - Adney DR + - Guitian J + - Amarin N + - Richt JA + - McDowell C + - Steel J + - Abu-Basha EA + - Al-Majali AM + - van Doremalen N + - Munster VJ + publisher: Viruses + date: '2021-03-30' + link: https://doi.org/10.3390/v13040592 + type: paper + year: 2021 +- id: doi:10.2196/26719 + title: 'Automated Travel History Extraction From Clinical Notes for Informing the + Detection of Emergent Infectious Disease Events: Algorithm Development and Validation' + authors: + - Kelly S Peterson + - Julia Lewis + - Olga V Patterson + - Alec B Chapman + - Daniel W Denhalter + - Patricia A Lye + - Vanessa W Stevens + - Shantini D Gamage + - Gary A Roselle + - Katherine S Wallace + - '**Makoto Jones**' + publisher: JMIR PUBLIC HEALTH AND SURVEILLANCE + date: '2021-03-24' + link: https://doi.org/10.2196/26719 + type: paper + year: 2021 +- id: doi:10.1016/j.urolonc.2021.03.004 + title: Cost-effectiveness analysis of neoadjuvant immune checkpoint inhibition vs. + cisplatin-based chemotherapy in muscle invasive bladder cancer. + authors: + - Ali Raza Khaki + - Yong Shan + - '**Richard E Nelson**' + - Sapna Kaul + - John L Gore + - Petros Grivas + - Stephen B Williams + publisher: Urologic oncology + date: '2021-03-23' + link: https://doi.org/10.1016/j.urolonc.2021.03.004 + type: paper + year: 2021 +- id: doi:10.3389/fpubh.2021.628341 + title: Psychological Stress Risk Factors, Concerns and Mental Health Support Among + Health Care Workers in Vietnam During the Coronavirus Disease 2019 (COVID-19) + Outbreak. + authors: + - Nguyen PTL + - Nguyen TBL + - Pham AG + - '**Duong KNC**' + - Gloria MAJ + - Vo TV + - Vo BV + - Phung TL + publisher: Frontiers in public health + date: '2021-03-19' + link: https://doi.org/10.3389/fpubh.2021.628341 + type: paper + year: 2021 +- id: doi:10.1515/jbcpp-2020-0115 + title: 'Ciprofloxacin-induced cutaneous adverse drug events: a systematic review + of descriptive studies.' + authors: + - Kashyap A + - Sreenivasan S + - Rajan AK + - '**Rashid M**' + - Chhabra M + publisher: Journal of basic and clinical physiology and pharmacology + date: '2021-03-16' + link: https://doi.org/10.1515/jbcpp-2020-0115 + type: paper + year: 2021 +- id: doi:10.2196/28357 + title: 'Correction: Psychological Impacts of COVID-19 During the First Nationwide + Lockdown in Vietnam: Web-Based, Cross-Sectional Survey Study.' + authors: + - '**Ngoc Cong Duong K**' + - Nguyen Le Bao T + - Thi Lan Nguyen P + - Vo Van T + - Phung Lam T + - Pham Gia A + - Anuratpanich L + - Vo Van B + publisher: JMIR formative research + date: '2021-03-05' + link: https://doi.org/10.2196/28357 + type: paper + year: 2021 +- id: doi:10.2196/preprints.28357 + title: 'Correction: Psychological Impacts of COVID-19 During the First Nationwide + Lockdown in Vietnam: Web-Based, Cross-Sectional Survey Study (Preprint)' + authors: + - '**Khanh Ngoc Cong Duong**' + - Tien Nguyen Le Bao + - Phuong Thi Lan Nguyen + - Thanh Vo Van + - Toi Phung Lam + - Anh Pham Gia + - Luerat Anuratpanich + - Bay Vo Van + publisher: Preprint + date: '2021-03-02' + link: https://doi.org/10.2196/preprints.28357 + type: preprint + year: 2021 +- id: doi:10.2105/ajph.2020.306068 + title: The Urgent Need for Public Health Preparedness Funding and Support. + authors: + - Linda C Degutis + - '**Kimberley Shoaf**' + - Tomás J Aragón + - Christopher Atchison + - David Dyjack + - Lisle Hites + - Jonathan Links + - Debra Olson + - Margaret Potter + - Jack Thompson + - Bernard Turnock + publisher: American journal of public health + date: '2021-03-01' + link: https://doi.org/10.2105/ajph.2020.306068 + type: paper + year: 2021 +- id: doi:10.1097/mlr.0000000000001496 + title: The Impact of Halting Elective Admissions in Anticipation of a Demand Surge + Due to the Coronavirus Pandemic (COVID-19). + authors: + - Martin BI + - Brodke DS + - Wilson FA + - '**Chaiyakunapruk N**' + - '**Nelson RE**' + publisher: Medical care + date: '2021-03-01' + link: https://doi.org/10.1097/mlr.0000000000001496 + type: paper + year: 2021 +- id: doi:10.1001/jamanetworkopen.2021.0971 + title: Association Between Contact Precautions and Transmission of Methicillin-Resistant + Staphylococcus aureus in Veterans Affairs Hospitals. + authors: + - '**Khader K**' + - Thomas A + - Stevens V + - Visnovsky L + - Nevers M + - '**Toth D**' + - '**Keegan LT**' + - '**Jones M**' + - Rubin M + - '**Samore MH**' + publisher: JAMA network open + date: '2021-03-01' + link: https://doi.org/10.1001/jamanetworkopen.2021.0971 + type: paper + year: 2021 +- id: doi:10.1371/journal.pcbi.1007948 + title: Bayesian parameter estimation for automatic annotation of gene functions + using observational data and phylogenetic trees. + authors: + - '**Vega Yon GG**' + - Thomas DC + - Morrison J + - Mi H + - Thomas PD + - Marjoram P + publisher: PLoS computational biology + date: '2021-02-18' + link: https://doi.org/10.1371/journal.pcbi.1007948 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa133 + title: Epidemiology, Disposition, and Treatment of Ambulatory Veterans With Skin + and Soft Tissue Infections. + authors: + - Jamie L W Rhoads + - Tina M Willson + - Jesse D Sutton + - Emily S Spivak + - '**Matthew H Samore**' + - Vanessa W Stevens + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-02-16' + link: https://doi.org/10.1093/cid/ciaa133 + type: paper + year: 2021 +- id: doi:10.1093/jpids/piaa015 + title: Oral Step-Down Therapy With Levofloxacin for Febrile Neutropenia in Children + With Cancer. + authors: + - Jared Olson + - Sonia Mehra + - Adam L Hersh + - Emily A Thorell + - Gregory J Stoddard + - Luke Maese + - Phillip E Barnette + - Richard S Lemons + - '**Andrew T Pavia**' + - Elizabeth D Knackstedt + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2021-02-13' + link: https://doi.org/10.1093/jpids/piaa015 + type: paper + year: 2021 +- id: doi:10.1542/hpeds.2020-001842 + title: 'Pneumonia Severity in Children: Utility of Procalcitonin in Risk Stratification.' + authors: + - Laura F Sartori + - Yuwei Zhu + - Carlos G Grijalva + - Krow Ampofo + - '**Per Gesteland**' + - Jakobi Johnson + - Rendie McHenry + - Donald H Arnold + - '**Andrew T Pavia**' + - Kathryn M Edwards + - Derek J Williams + publisher: Hospital pediatrics + date: '2021-02-12' + link: https://doi.org/10.1542/hpeds.2020-001842 + type: paper + year: 2021 +- id: doi:10.1177/0033354920988612 + title: 'Robust Testing in Outpatient Settings to Explore COVID-19 Epidemiology: + Disparities in Race/Ethnicity and Age, Salt Lake County, Utah, 2020.' + authors: + - Ahmed SM + - Shah RU + - Fernandez V + - Grineski S + - Brintz B + - '**Samore MH**' + - Ferrari MJ + - Leung DT + - '**Keegan LT**' + publisher: 'Public health reports (Washington, D.C. : 1974)' + date: '2021-02-04' + link: https://doi.org/10.1177/0033354920988612 + type: paper + year: 2021 +- id: doi:10.7554/elife.63009 + title: A modular approach to integrating multiple data sources into real-time clinical + prediction for pediatric diarrhea. + authors: + - Brintz BJ + - Haaland B + - Howard J + - Chao DL + - Proctor JL + - Khan AI + - Ahmed SM + - '**Keegan LT**' + - Greene T + - Keita AM + - Kotloff KL + - Platts-Mills JA + - Nelson EJ + - Levine AC + - '**Pavia AT**' + - Leung DT + publisher: eLife + date: '2021-02-02' + link: https://doi.org/10.7554/elife.63009 + type: paper + year: 2021 +- id: doi:10.1093/infdis/jiaa369 + title: Presence of Antibodies Against Haemophilus influenzae Serotype a in Alaska + Before and After the Emergence of Invasive Infections. + authors: + - McClure M + - Miernyk K + - Bruden D + - Rudolph K + - Hennessy TW + - Bruce MG + - '**Nolen LD**' + publisher: The Journal of infectious diseases + date: '2021-02-01' + link: https://doi.org/10.1093/infdis/jiaa369 + type: paper + year: 2021 +- id: doi:10.1001/jamanetworkopen.2020.37047 + title: Association of Temporary Financial Assistance With Housing Stability Among + US Veterans in the Supportive Services for Veteran Families Program. + authors: + - '**Richard E Nelson**' + - Thomas H Byrne + - Ying Suo + - James Cook + - Warren Pettey + - Adi V Gundlapalli + - Tom Greene + - Lillian Gelberg + - Stefan G Kertesz + - Jack Tsai + - Ann Elizabeth Montgomery + publisher: JAMA network open + date: '2021-02-01' + link: https://doi.org/10.1001/jamanetworkopen.2020.37047 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1580 + title: Transmission Dynamics of Clostridioides difficile in 2 High-Acuity Hospital + Units. + authors: + - '**Khader K**' + - Munoz-Price LS + - Hanson R + - Stevens V + - '**Keegan LT**' + - Thomas A + - Pezzin LE + - Nattinger A + - Singh S + - '**Samore MH**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-29' + link: https://doi.org/10.1093/cid/ciaa1580 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1604 + title: 'Simulated Adoption of 2019 Community-Acquired Pneumonia Guidelines Across + 114 Veterans Affairs Medical Centers: Estimated Impact on Culturing and Antibiotic + Selection in Hospitalized Patients.' + authors: + - Christensen MA + - Nevers M + - Ying J + - Haroldsen C + - Stevens V + - '**Jones MM**' + - Yarbrough PM + - Goetz MB + - Restrepo MI + - Madaras-Kelly K + - '**Samore MH**' + - Jones BE + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-29' + link: https://doi.org/10.1093/cid/ciaa1604 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1581 + title: National Estimates of Healthcare Costs Associated With Multidrug-Resistant + Bacterial Infections Among Hospitalized Patients in the United States. + authors: + - '**Richard E Nelson**' + - Kelly M Hatfield + - Hannah Wolford + - '**Matthew H Samore**' + - R Douglas Scott + - Sujan C Reddy + - Babatunde Olubajo + - Prabasaj Paul + - John A Jernigan + - James Baggs + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-29' + link: https://doi.org/10.1093/cid/ciaa1581 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1691 + title: 'Matching Methods to Problems: Using Data Science and Transmission Modeling + to Combat Antimicrobial Resistance.' + authors: + - '**Michael A Rubin**' + - '**Richard E Nelson**' + - '**Matthew H Samore**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-29' + link: https://doi.org/10.1093/cid/ciaa1691 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1591 + title: Expanding an Economic Evaluation of the Veterans Affairs (VA) Methicillin-resistant + Staphylococcus aureus (MRSA) Prevention Initiative to Include Prevention of Infections + From Other Pathogens. + authors: + - '**Nelson RE**' + - Goto M + - '**Samore MH**' + - '**Jones M**' + - Stevens VW + - Evans ME + - Schweizer ML + - Perencevich EN + - '**Rubin MA**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-29' + link: https://doi.org/10.1093/cid/ciaa1591 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1602 + title: Environmental Contamination of Contact Precaution and Non-Contact Precaution + Patient Rooms in Six Acute Care Facilities. + authors: + - Windy D Tanner + - Molly K Leecaster + - Yue Zhang + - Kristina M Stratford + - '**Jeanmarie Mayer**' + - Lindsay D Visnovsky + - Heba Alhmidi + - Jennifer L Cadnum + - Annette L Jencson + - Sreelatha Koganti + - Christina P Bennett + - Curtis J Donskey + - Judith Noble-Wang + - Sujan C Reddy + - Laura J Rose + - Lauren Watson + - Emma Ide + - Tyler Wipperfurth + - Nasia Safdar + - Maria Arasim + - Colleen Macke + - Patti Roman + - Sarah L Krein + - Catherine Loc-Carrillo + - '**Matthew H Samore**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-29' + link: https://doi.org/10.1093/cid/ciaa1602 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1603 + title: Effectiveness of Contact Precautions to Prevent Transmission of Methicillin-Resistant + Staphylococcus aureus and Vancomycin-Resistant Enterococci in Intensive Care Units. + authors: + - '**Khader K**' + - Thomas A + - Huskins WC + - Stevens V + - '**Keegan LT**' + - Visnovsky L + - '**Samore MH**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-29' + link: https://doi.org/10.1093/cid/ciaa1603 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1590 + title: 'Economic Evaluations of New Antibiotics: The High Potential Value of Reducing + Healthcare Transmission Through Decolonization.' + authors: + - '**Damon J A Toth**' + - '**Matthew H Samore**' + - '**Richard E Nelson**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-29' + link: https://doi.org/10.1093/cid/ciaa1590 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa1582 + title: Attributable Cost of Healthcare-Associated Methicillin-Resistant Staphylococcus + aureus Infection in a Long-term Care Center. + authors: + - '**Nelson RE**' + - Lautenbach E + - Chang N + - '**Jones M**' + - Willson T + - David M + - Linkin D + - Glick H + - Doshi JA + - Stevens VW + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-29' + link: https://doi.org/10.1093/cid/ciaa1582 + type: paper + year: 2021 +- id: doi:10.1109/tvcg.2020.3030405 + title: Insights From Experiments With Rigor in an EvoBio Design Study. + authors: + - Rogers J + - Patton AH + - Harmon L + - '**Lex A**' + - Meyer M + publisher: IEEE transactions on visualization and computer graphics + date: '2021-01-28' + link: https://doi.org/10.1109/tvcg.2020.3030405 + type: paper + year: 2021 +- id: doi:10.1016/j.ajic.2021.01.015 + title: 'Social dynamics of a population-level dashboard for antimicrobial stewardship: + A qualitative analysis.' + authors: + - Taber P + - Weir C + - Butler JM + - Graber CJ + - '**Jones MM**' + - Madaras-Kelly K + - Zhang Y + - Chou AF + - '**Samore MH**' + - Goetz MB + - Glassman PA + publisher: American journal of infection control + date: '2021-01-27' + link: https://doi.org/10.1016/j.ajic.2021.01.015 + type: paper + year: 2021 +- id: doi:10.1093/cid/ciaa088 + title: Clinical Features of Human Metapneumovirus-Associated Community-acquired + Pneumonia Hospitalizations. + authors: + - Leigh M Howard + - Kathryn M Edwards + - Yuwei Zhu + - Carlos G Grijalva + - Wesley H Self + - Seema Jain + - Krow Ampofo + - '**Andrew T Pavia**' + - Sandra R Arnold + - Jonathan A McCullers + - Evan J Anderson + - Richard G Wunderink + - Derek J Williams + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2021-01-23' + link: https://doi.org/10.1093/cid/ciaa088 + type: paper + year: 2021 +- id: doi:10.1186/s12916-020-01886-2 + title: Efficient SARS-CoV-2 surveillance strategies to prevent deadly outbreaks + in vulnerable populations. + authors: + - '**Damon J A Toth**' + - '**Karim Khader**' + publisher: BMC medicine + date: '2021-01-22' + link: https://doi.org/10.1186/s12916-020-01886-2 + type: paper + year: 2021 +- id: doi:10.1109/icrest51555.2021.9331132 + title: Prediction of Apple Leaf Diseases Using Multiclass Support Vector Machine + authors: + - Soarov Chakraborty + - Shourav Paul + - Md. Rahat-uz-Zaman + publisher: 2021 2nd International Conference on Robotics, Electrical and Signal + Processing Techniques (ICREST) + date: '2021-01-05' + link: http://dx.doi.org/10.1109/icrest51555.2021.9331132 + type: paper + year: 2021 +- id: doi:10.2174/1574884715666200513090634 + title: 'Survival Benefits of N-Acetylcysteine in Rodenticide Poisoning: Retrospective + Evidence from an Indian Tertiary Care Setting.' + authors: + - Mark K + - Hyder S + - '**Rashid M**' + - Chandran VP + - Seshadri S + - Seshadri S + - Nair S + - Thunga G + publisher: Current reviews in clinical and experimental pharmacology + date: '2021-01-01' + link: https://doi.org/10.2174/1574884715666200513090634 + type: paper + year: 2021 +- id: doi:10.1016/j.socnet.2020.07.005 + title: Exponential random graph models for little networks + authors: + - '**George G. Vega Yon**' + - Andrew Slaughter + - Kayla de la Haye + publisher: Social Networks + date: '2021-01-01' + link: http://dx.doi.org/10.1016/j.socnet.2020.07.005 + type: paper + year: 2021 +- id: doi:10.17016/feds.2021.006 + title: Bunching Estimation of Elasticities Using Stata + authors: + - Marinho Bertanha + - Andrew H. McCallum + - Alexis Payne + - '**Nathan Seegert**' + publisher: Finance and Economics Discussion Series + date: '2021-01-01' + link: https://doi.org/10.17016/feds.2021.006 + type: paper + year: 2021 +- id: doi:10.17016/feds.2021.002 + title: Better Bunching, Nicer Notching + authors: + - Marinho Bertanha + - Andrew H. McCallum + - '**Nathan Seegert**' + publisher: Finance and Economics Discussion Series + date: '2021-01-01' + link: https://doi.org/10.17016/feds.2021.002 + type: paper + year: 2021 +- id: doi:10.1093/jpids/piz088 + title: Clinical and Molecular Epidemiology of Invasive Haemophilus influenzae Serotype + a Infections in Utah Children. + authors: + - Hillary Crandall + - Jennifer Christiansen + - Alyssa A Varghese + - Adam Russon + - E Kent Korgenski + - Erika K Bengtson + - Mandy Dickey + - Jarrett Killpack + - Elizabeth D Knackstedt + - Judy A Daly + - Krow Ampofo + - '**Andrew T Pavia**' + - Anne J Blaschke + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2020-12-30' + link: https://doi.org/10.1093/jpids/piz088 + type: paper + year: 2020 +- id: doi:10.5206/mase/10852 + title: TRANSIENT DYNAMICS OF THE KIDNEY DISEASE EPIDEMIC AMONG HIV-INFECTED INDIVIDUALS + authors: + - Dylan Hull-Nye + - Bhawna Malik + - Ravikiran Keshavamurthy + - '**Elissa J. Schwartz**' + publisher: Mathematics in Applied Sciences and Engineering + date: '2020-12-24' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85129628489&partnerID=MN8TOARS + type: paper + year: 2020 +- id: doi:10.22541/au.160855820.09604024/v1 + title: 'MrIML: Multi-response interpretable machine learning to map genomic landscapes' + authors: + - Fountain-Jones N + - Kozakiewicz C + - Forester B + - '**Landguth E**' + - Carver S + - Charleston M + - Gagne R + - Greenwell B + - Kraberger S + - Trumbo D + - Mayer M + - Clark N + - Machado G + publisher: '' + date: '2020-12-21' + link: https://doi.org/10.22541/au.160855820.09604024/v1 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.1346 + title: Changes in the accuracy of administrative data for the detection of surgical + site infections. + authors: + - Brian T Bucher + - Meng Yang + - Julie Arndorfer + - Cherie Frame + - Jan Orton + - '**Matthew H Samore**' + - Kristin K Dascomb + publisher: Infection control and hospital epidemiology + date: '2020-12-17' + link: https://doi.org/10.1017/ice.2020.1346 + type: paper + year: 2020 +- id: doi:10.2196/24776 + title: 'Psychological Impacts of COVID-19 During the First Nationwide Lockdown in + Vietnam: Web-Based, Cross-Sectional Survey Study.' + authors: + - '**Ngoc Cong Duong K**' + - Nguyen Le Bao T + - Thi Lan Nguyen P + - Vo Van T + - Phung Lam T + - Pham Gia A + - Anuratpanich L + - Vo Van B + publisher: JMIR formative research + date: '2020-12-15' + link: https://doi.org/10.2196/24776 + type: paper + year: 2020 +- id: doi:10.1016/j.vaccine.2020.12.016 + title: Identification of patients at risk of Clostridioides difficile infection + for enrollment in vaccine clinical trials. + authors: + - Vanessa W Stevens + - Ellyn M Russo + - Yinong Young-Xu + - Molly Leecaster + - Yue Zhang + - Chong Zhang + - Holly Yu + - Bing Cai + - Elisa N Gonzalez + - Dale N Gerding + - Jody Lawrence + - '**Matthew H Samore**' + publisher: Vaccine + date: '2020-12-14' + link: https://doi.org/10.1016/j.vaccine.2020.12.016 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.1323 + title: Carbapenem-resistant Enterobacteriaceae epidemiology in Veterans' + Affairs medical centers varies by facility characteristics. + authors: + - Wirth MS + - Fitzpatrick MA + - Suda KJ + - Wilson GM + - Ramanathan S + - Evans ME + - '**Jones MM**' + - Pfeiffer CD + - Evans CT + publisher: Infection control and hospital epidemiology + date: '2020-12-11' + link: https://doi.org/10.1017/ice.2020.1323 + type: paper + year: 2020 +- id: doi:10.1016/j.ctim.2020.102636 + title: 'The effect of Bertholletia excelsa on body weight, cholestrol, and c-reactive + protein: A systematic review and meta-analysis of randomized controlled trials.' + authors: + - Hou L + - '**Rashid M**' + - Chhabra M + - Chandrasekhar B + - Amirthalingam P + - Ray S + - Li Z + publisher: Complementary therapies in medicine + date: '2020-11-30' + link: https://doi.org/10.1016/j.ctim.2020.102636 + type: paper + year: 2020 +- id: doi:10.1101/2020.11.25.20186056 + title: Seasonal patterns of dengue incidence in Thailand across the urban-rural + gradient + authors: + - Bi Q + - Cummings DA + - Reich NG + - '**Keegan LT**' + - Kaminsky J + - Salje H + - Clapham H + - Doung-ngern P + - Iamsirithaworn S + - Lessler J + publisher: medRxiv + date: '2020-11-27' + link: https://doi.org/10.1101/2020.11.25.20186056 + type: preprint + year: 2020 +- id: doi:10.3390/pharmacy8040219 + title: 'Potentially Inappropriate Medication Use in Older Hospitalized Patients + with Type 2 Diabetes: A Cross-Sectional Study.' + authors: + - Sharma R + - Chhabra M + - Vidyasagar K + - '**Rashid M**' + - Fialova D + - Bhagavathula AS + publisher: Pharmacy (Basel, Switzerland) + date: '2020-11-17' + link: https://doi.org/10.3390/pharmacy8040219 + type: paper + year: 2020 +- id: doi:10.1016/j.cell.2020.10.049 + title: 'Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic + Immunocompromised Individual with Cancer.' + authors: + - Avanzato VA + - Matson MJ + - '**Seifert SN**' + - Pryce R + - Williamson BN + - Anzick SL + - Barbian K + - Judson SD + - Fischer ER + - Martens C + - Bowden TA + - de Wit E + - Riedo FX + - Munster VJ + publisher: Cell + date: '2020-11-04' + link: https://doi.org/10.1016/j.cell.2020.10.049 + type: paper + year: 2020 +- id: doi:10.7764/cdi.33.533 + title: 'The impact of TV rating on Twitter''s activity: Evidence for Chile based + on the Teleton 2012,El impacto del rating televisivo sobre la actividad en Twitter: + evidencia para Chile sobre la base del evento Teletón 2012' + authors: + - Universidad Adolfo Ibáñez (Chile) + - Jorge Fábrega + - George Vega + - NodosChile (Chile) + publisher: Cuadernos Info + date: '2020-10-20' + link: https://www.scopus.com/inward/record.url?eid=2-s2.0-84902149974&partnerID=MN8TOARS + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.1277 + title: Inpatient antibiotic utilization in the Veterans' Health Administration during + the coronavirus disease 2019 (COVID-19) pandemic. + authors: + - Dieringer TD + - Furukawa D + - Graber CJ + - Stevens VW + - '**Jones MM**' + - '**Rubin MA**' + - Goetz MB + publisher: Infection control and hospital epidemiology + date: '2020-10-20' + link: https://doi.org/10.1017/ice.2020.1277 + type: paper + year: 2020 +- id: doi:10.3390/a13100258 + title: An Efficient Data Retrieval Parallel Reeb Graph Algorithm + authors: + - Mustafa Hajij + - '**Paul Rosen**' + publisher: Algorithms + date: '2020-10-12' + link: https://doi.org/10.3390/a13100258 + type: paper + year: 2020 +- id: doi:10.1371/journal.pntd.0008677 + title: Clinical predictors for etiology of acute diarrhea in children in resource-limited + settings. + authors: + - Ben J Brintz + - Joel I Howard + - Benjamin Haaland + - James A Platts-Mills + - Tom Greene + - Adam C Levine + - Eric J Nelson + - '**Andrew T Pavia**' + - Karen L Kotloff + - Daniel T Leung + publisher: PLoS neglected tropical diseases + date: '2020-10-09' + link: https://doi.org/10.1371/journal.pntd.0008677 + type: paper + year: 2020 +- id: doi:10.2196/preprints.24776 + title: 'Psychological Impacts of COVID-19 During the First Nationwide Lockdown in + Vietnam: Web-Based, Cross-Sectional Survey Study (Preprint)' + authors: + - '**Khanh Ngoc Cong Duong**' + - Tien Nguyen Le Bao + - Phuong Thi Lan Nguyen + - Thanh Vo Van + - Toi Phung Lam + - Anh Pham Gia + - Luerat Anuratpanich + - Bay Vo Van + publisher: Preprint + date: '2020-10-07' + link: https://doi.org/10.2196/preprints.24776 + type: preprint + year: 2020 +- id: doi:10.1109/vis47514.2020.00030 + title: 'Trrack: A Library for Provenance-Tracking in Web-Based Visualizations' + authors: + - Zach Cutler + - Kiran Gadhave + - '**Alexander Lex**' + publisher: 2020 IEEE Visualization Conference (VIS) + date: '2020-10-01' + link: http://dx.doi.org/10.1109/vis47514.2020.00030 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.1008 + title: Risk Factors for Carbapenemase Producing-Carbapenem Resistant Enterobacteriaceae + in Those With CRE Positive Cultures + authors: + - Geneva Wilson + - Christopher Pfeiffer + - Margaret Fitzpatrick + - Katie Suda + - Brian Bartle + - Michael Rubin + - Eli Perencevich + - Charlesnika Evans + publisher: INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY + date: '2020-10-01' + link: https://doi.org/10.1017/ice.2020.1008 + type: paper + year: 2020 +- id: doi:10.3934/mbe.2020383 + title: 'Predicting COVID-19 using past pandemics as a guide: how reliable were mathematical + models then, and how reliable will they be now?' + authors: + - Costris-Vas C + - '**Schwartz EJ**' + - Smith R + publisher: 'Mathematical biosciences and engineering : MBE' + date: '2020-10-01' + link: https://doi.org/10.3934/mbe.2020383 + type: paper + year: 2020 +- id: doi:10.1097/sla.0000000000004133 + title: 'Portable Automated Surveillance of Surgical Site Infections Using Natural + Language Processing: Development and Validation.' + authors: + - Brian T Bucher + - Jianlin Shi + - Jeffrey P Ferraro + - David E Skarda + - '**Matthew H Samore**' + - John F Hurdle + - Adi V Gundlapalli + - Wendy W Chapman + - Samuel R G Finlayson + publisher: Annals of surgery + date: '2020-10-01' + link: https://doi.org/10.1097/sla.0000000000004133 + type: paper + year: 2020 +- id: doi:10.1093/cid/ciz1053 + title: Pneumonia and Electronic Health Records-A Window Into Disease, A Mirror of + Our Behavior, or Just Another Streetlight? + authors: + - Jones BE + - '**Jones MM**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2020-10-01' + link: https://doi.org/10.1093/cid/ciz1053 + type: paper + year: 2020 +- id: doi:10.1001/jamanetworkopen.2020.20166 + title: Oral β-Lactam Antibiotics vs Fluoroquinolones or Trimethoprim-Sulfamethoxazole + for Definitive Treatment of Enterobacterales Bacteremia From a Urine Source. + authors: + - Jesse D Sutton + - Vanessa W Stevens + - Nai-Chung N Chang + - '**Karim Khader**' + - Tristan T Timbrook + - Emily S Spivak + publisher: JAMA network open + date: '2020-10-01' + link: https://doi.org/10.1001/jamanetworkopen.2020.20166 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.897 + title: Laboratory Testing, Diagnostic Coding, and Treatment for Electronic Identification + of Clostridioides difficile Infection + authors: + - Vanessa Stevens + - Andrea Benin + - Raymund Dantes + - Karim Khader + - Sean Nugent + - Julia Lewis + - Terrence Adam + - Rui Zhang + - Steven Fu + - '**Makoto Jones**' + - Daniel Pollock + - Steven Waisbren + publisher: INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY + date: '2020-10-01' + link: https://doi.org/10.1017/ice.2020.897 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.473 + title: Development of an Electronic Tool to Measure Daily Appropriateness of Inpatient + Antibacterial Use + authors: + - Vanessa Stevens + - Pamela Belperio + - Melinda Neuhauser + - Lauri Hicks + - McKenna Nevers + - Matthew Goetz + - Nai-Chung Chang + - Arjun Srinivasan + - '**Makoto Jones**' + publisher: INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY + date: '2020-10-01' + link: https://doi.org/10.1017/ice.2020.473 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.635 + title: Appropriateness of Anti-MRSA Therapy in Hospitalized Patients With Suspected + Community-Onset Infections + authors: + - Sydney Springer + - Muriel Burk + - Kelly Echevarria + - '**Makoto Jones**' + - Matthew Goetz + publisher: INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY + date: '2020-10-01' + link: https://doi.org/10.1017/ice.2020.635 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.632 + title: Antimicrobial Stewardship Programs and Antibiotic Usage and Resistance in + Department of Veterans' Affairs Medical Centers + authors: + - Hope Palalay + - Allison Kelly + - Loretta Simbartl + - Shantini Gamage + - '**Makoto Jones**' + - Gary Roselle + publisher: INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY date: '2020-10-01' - link: https://doi.org/hbz8b5 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1038/S41393-019-0393-Y + link: https://doi.org/10.1017/ice.2020.632 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.328 + title: A survey of infection control strategies for carbapenem-resistant Enterobacteriaceae + in Department of Veterans' Affairs facilities. + authors: + - Ramanathan S + - Suda KJ + - Fitzpatrick MA + - Guihan M + - Goedken CC + - Safdar N + - Evans M + - '**Jones M**' + - Pfeiffer CD + - Perencevich EN + - Rubin M + - Evans CT + - QUERI CARRIAGE Program + publisher: Infection control and hospital epidemiology + date: '2020-09-22' + link: https://doi.org/10.1017/ice.2020.328 + type: paper + year: 2020 +- id: doi:10.1007/s11606-020-06195-1 + title: 'The Enduring Health Consequences of Combat Trauma: a Legacy of Chronic Disease.' + authors: + - Stewart IJ + - Poltavskiy E + - Howard JT + - Janak JC + - Pettey W + - Zarzabal LA + - Walker LE + - Beyer CA + - Sim A + - Suo Y + - '**Redd A**' + - Chung KK + - Gundlapalli A + publisher: Journal of general internal medicine + date: '2020-09-21' + link: https://doi.org/10.1007/s11606-020-06195-1 + type: paper + year: 2020 +- id: doi:10.3390/ijerph17186842 + title: 'Developing an Environmental Health Sciences COVID-19 Research Agenda: Results + from the NIEHS Disaster Research Response (DR2) Work Group''s Modified Delphi + Method.' + authors: + - Nicole A Errett + - Marilyn Howarth + - '**Kimberley Shoaf**' + - Megan Couture + - Steven Ramsey + - Richard Rosselli + - Sara Webb + - April Bennett + - Aubrey Miller + publisher: International journal of environmental research and public health + date: '2020-09-19' + link: https://doi.org/10.3390/ijerph17186842 + type: paper + year: 2020 +- id: doi:10.1371/journal.pone.0238991 + title: Clinical and molecular epidemiology of invasive Staphylococcus aureus infection + in Utah children; continued dominance of MSSA over MRSA. + authors: + - Hillary Crandall + - Aurélie Kapusta + - Jarrett Killpack + - Carly Heyrend + - Kody Nilsson + - Mandy Dickey + - Judy A Daly + - Krow Ampofo + - '**Andrew T Pavia**' + - Matthew A Mulvey + - Mark Yandell + - Kristina G Hulten + - Anne J Blaschke + publisher: PloS one + date: '2020-09-18' + link: https://doi.org/10.1371/journal.pone.0238991 + type: paper + year: 2020 +- id: doi:10.1016/j.tree.2020.08.014 + title: 'Beyond Infection: Integrating Competence into Reservoir Host Prediction.' + authors: + - Becker DJ + - '**Seifert SN**' + - Carlson CJ + publisher: Trends in ecology & evolution + date: '2020-09-11' + link: https://doi.org/10.1016/j.tree.2020.08.014 + type: paper + year: 2020 +- id: doi:10.1097/pcc.0000000000002507 + title: 'Factors That Contribute to Cost Differences Based on ICU of Admission in + Neonates Undergoing Congenital Heart Surgery: A Novel Decomposition Analysis.' + authors: + - Joyce T Johnson + - Kirsen L Sullivan + - '**Richard E Nelson**' + - Xiaoming Sheng + - Tom H Greene + - David K Bailly + - Aaron W Eckhauser + - Bradley S Marino + - L LuAnn Minich + - Nelangi M Pinto + publisher: 'Pediatric critical care medicine : a journal of the Society of Critical + Care Medicine and the World Federation of Pediatric Intensive and Critical Care + Societies' + date: '2020-09-01' + link: https://doi.org/10.1097/pcc.0000000000002507 + type: paper + year: 2020 +- id: doi:10.3390/ijerph17176295 + title: What Protective Health Measures Are Americans Taking in Response to COVID-19? + Results from the COVID Impact Survey. + authors: + - Fares Qeadan + - Nana Akofua Mensah + - Benjamin Tingey + - Rona Bern + - Tracy Rees + - Sharon Talboys + - Tejinder Pal Singh + - Steven Lacey + - '**Kimberley Shoaf**' + publisher: International journal of environmental research and public health + date: '2020-08-29' + link: https://doi.org/10.3390/ijerph17176295 + type: paper + year: 2020 +- id: doi:10.1101/2020.08.19.20177493 + title: Ensemble Forecasts of Coronavirus Disease 2019 (COVID-19) in the U.S. + authors: + - Ray EL + - Wattanachit N + - Niemi J + - Kanji AH + - House K + - Cramer EY + - Bracher J + - Zheng A + - Yamana TK + - Xiong X + - Woody S + - Wang Y + - Wang L + - Walraven RL + - Tomar V + - Sherratt K + - Sheldon D + - Reiner RC + - Prakash BA + - Osthus D + - Li ML + - Lee EC + - Koyluoglu U + - Keskinocak P + - Gu Y + - Gu Q + - George GE + - España G + - Corsetti S + - Chhatwal J + - Cavany S + - Biegel H + - Ben-Nun M + - Walker J + - Slayton R + - Lopez V + - Biggerstaff M + - Johansson MA + - Reich NG + publisher: medRxiv + date: '2020-08-22' + link: https://doi.org/10.1101/2020.08.19.20177493 + type: preprint + year: 2020 +- id: doi:10.1080/14656566.2020.1792884 + title: 'The trade-off dilemma in pharmacotherapy of COVID-19: systematic review, + meta-analysis, and implications.' + authors: + - Khan S + - Gionfriddo MR + - Cortes-Penfield N + - Thunga G + - '**Rashid M**' + publisher: Expert opinion on pharmacotherapy + date: '2020-08-04' + link: https://doi.org/10.1080/14656566.2020.1792884 + type: paper + year: 2020 +- id: doi:10.1093/cid/ciz941 + title: Decreases in Antimicrobial Use Associated With Multihospital Implementation + of Electronic Antimicrobial Stewardship Tools. + authors: + - Graber CJ + - '**Jones MM**' + - Goetz MB + - Madaras-Kelly K + - Zhang Y + - Butler JM + - Weir C + - Chou AF + - Youn SY + - '**Samore MH**' + - Glassman PA + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2020-08-01' + link: https://doi.org/10.1093/cid/ciz941 + type: paper + year: 2020 +- id: doi:10.1016/j.vaccine.2020.06.081 + title: Modeling the potential impact of administering vaccines against Clostridioides + difficile infection to individuals in healthcare facilities. + authors: + - '**Toth DJA**' + - '**Keegan LT**' + - '**Samore MH**' + - '**Khader K**' + - O'Hagan JJ + - Yu H + - Quintana A + - Swerdlow DL + publisher: Vaccine + date: '2020-07-21' + link: https://doi.org/10.1016/j.vaccine.2020.06.081 + type: paper + year: 2020 +- id: doi:10.1016/j.jpeds.2020.07.033 + title: Cost-Effectiveness of Nusinersen and Universal Newborn Screening for Spinal + Muscular Atrophy. + authors: + - Ali Jalali + - Erin Rothwell + - Jeffrey R Botkin + - Rebecca A Anderson + - Russell J Butterfield + - '**Richard E Nelson**' + publisher: The Journal of pediatrics + date: '2020-07-11' + link: https://doi.org/10.1016/j.jpeds.2020.07.033 + type: paper + year: 2020 +- id: doi:10.1101/2020.07.07.20148510 + title: Modeling reductions in SARS-CoV-2 transmission and hospital burden achieved + by prioritizing testing using a clinical prediction rule + authors: + - Reimer JR + - Ahmed SM + - Brintz B + - Shah RU + - '**Keegan LT**' + - Ferrari MJ + - Leung DT + publisher: medRxiv + date: '2020-07-08' + link: https://doi.org/10.1101/2020.07.07.20148510 + type: preprint + year: 2020 +- id: doi:10.1093/cid/ciz871 + title: Use of Oral Vancomycin for Clostridioides difficile Infection and the Risk + of Vancomycin-Resistant Enterococci. + authors: + - Stevens VW + - '**Khader K**' + - Echevarria K + - Nelson RE + - Zhang Y + - '**Jones M**' + - Timbrook TT + - '**Samore MH**' + - '**Rubin MA**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2020-07-01' + link: https://doi.org/10.1093/cid/ciz871 + type: paper + year: 2020 +- id: doi:10.1097/bot.0000000000001731 + title: Cost-Effectiveness of Operative Versus Nonoperative Management of Patients + With Intra-articular Calcaneal Fractures. + authors: + - Stephanie R Albin + - Brandon K Bellows + - Drew H Van Boerum + - Stephen Hunter + - Shane L Koppenhaver + - '**Richard E Nelson**' + - Robin Marcus + - Lee Dibble + - Mark Cornwall + - Julie M Fritz + publisher: Journal of orthopaedic trauma + date: '2020-07-01' + link: https://doi.org/10.1097/bot.0000000000001731 + type: paper + year: 2020 +- id: doi:10.1097/aog.0000000000003930 + title: Cost of Elective Labor Induction Compared With Expectant Management in Nulliparous + Women. + authors: + - Brett D Einerson + - '**Richard E Nelson**' + - Grecio Sandoval + - M Sean Esplin + - D Ware Branch + - Torri D Metz + - Robert M Silver + - William A Grobman + - Uma M Reddy + - Michael Varner + - Eunice Kennedy Shriver National Institute of Child Health and Human Development + (NICHD) Maternal-Fetal Medicine Units (… + publisher: Obstetrics and gynecology + date: '2020-07-01' + link: https://doi.org/10.1097/aog.0000000000003930 + type: paper + year: 2020 +- id: doi:10.1109/cbms49503.2020.00092 + title: 'Converting Clinical Pathways to BPM plus Standards: A Case Study in Stable + Ischemic Heart Disease' + authors: + - Junghoon Chae + - Byung Hoon Park + - '**Makoto Jones**' + - Merry Ward + - Jonathan Nebeker + publisher: 2020 IEEE 33RD INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS(CBMS + 2020) + date: '2020-07-01' + link: https://doi.org/10.1109/cbms49503.2020.00092 + type: paper + year: 2020 +- id: doi:10.1109/cbms49503.2020.00040 + title: Characterizing Sub-Cohorts via Data Normalization and Representation Learning + authors: + - Everett Rush + - Ozgur Ozmen + - Kathryn Knight + - Byung Park + - Clifton Baker + - '**Makoto Jones**' + - Merry Ward + - Jonathan Nebeker + publisher: 2020 IEEE 33RD INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS(CBMS + 2020) + date: '2020-07-01' + link: https://doi.org/10.1109/cbms49503.2020.00040 + type: paper + year: 2020 +- id: doi:10.1016/j.socscimed.2019.03.041 + title: 'Corrigendum to "Network influences on policy implementation: Evidence from + a global health treaty" [Soc. Sci. Med.] 222 (February 2019) 188-197.' + authors: + - Valente TW + - Pitts S + - Wipfli H + - '**Vega Yon GG**' + publisher: Social science & medicine (1982) + date: '2020-06-23' + link: https://doi.org/10.1016/j.socscimed.2019.03.041 + type: paper + year: 2020 +- id: doi:10.2174/1574886315666200311120151 + title: 'Inappropriate Medication Use and Cost Comparison Analysis of Proton Pump + Inhibitors: Evidence from an Indian Tertiary Care Facility.' + authors: + - Venkataraman R + - '**Rashid M**' + - Shrestha H + publisher: Current drug safety + date: '2020-06-19' + link: https://doi.org/10.2174/1574886315666200311120151 + type: paper + year: 2020 +- id: doi:10.1093/ofid/ofaa238 + title: Effectiveness of Copper-Impregnated Solid Surfaces on Lowering Microbial + Bio-Burden Levels in an Acute Care Hospital. + authors: + - Piyali Chatterjee + - Marjory D Williams + - John D Coppin + - Yonhui Allton + - Hosoon Choi + - Julie Ann D Martel + - John E Zeber + - '**Richard E Nelson**' + - Curtis J Donskey + - Chetan Jinadatha + publisher: Open forum infectious diseases + date: '2020-06-19' + link: https://doi.org/10.1093/ofid/ofaa238 + type: paper + year: 2020 +- id: doi:10.1093/ofid/ofaa229 + title: 'Perspectives of Physician and Pharmacist Stewards on Successful Antibiotic + Stewardship Program Implementation: A Qualitative Study.' + authors: + - Tamar F Barlam + - Ellen Childs + - Sarah A Zieminski + - Tsega M Meshesha + - Kathryn E Jones + - Jorie M Butler + - Laura J Damschroder + - Matthew Bidwell Goetz + - Karl Madaras-Kelly + - Caitlin M Reardon + - '**Matthew H Samore**' + - Jincheng Shen + - Edward Stenehjem + - Yue Zhang + - Mari-Lynn Drainoni + publisher: Open forum infectious diseases + date: '2020-06-15' + link: https://doi.org/10.1093/ofid/ofaa229 + type: paper + year: 2020 +- id: doi:10.1101/2020.06.12.20129551 + title: 'Planning for the aftershocks: a model of post-acute care needs for hospitalized + COVID-19 patients' + authors: + - Maloney M + - Morley R + - Checketts R + - Weir P + - Barfuss D + - Meredith HR + - Hofmann MG + - Samore MH + - '**Keegan LT**' + publisher: medRxiv + date: '2020-06-13' + link: https://doi.org/10.1101/2020.06.12.20129551 + type: preprint + year: 2020 + group: featured + image: images/LTCF_PAC.png +- id: doi:10.1038/s41579-020-0394-z + title: Bat-borne virus diversity, spillover and emergence. + authors: + - Letko M + - '**Seifert SN**' + - Olival KJ + - Plowright RK + - Munster VJ + publisher: Nature reviews. Microbiology + date: '2020-06-11' + link: https://doi.org/10.1038/s41579-020-0394-z + type: paper + year: 2020 +- id: doi:10.1093/cid/ciz839 + title: Response to Apewokin and Onyishi. + authors: + - '**Andrew T Pavia**' + - Michael G Ison + - Cameron R Wolfe + - Timothy M Uyeki + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2020-06-10' + link: https://doi.org/10.1093/cid/ciz839 + type: paper + year: 2020 +- id: doi:10.3201/eid2609.202267 + title: Effect of Environmental Conditions on SARS-CoV-2 Stability in Human Nasal + Mucus and Sputum. + authors: + - Matson MJ + - Yinda CK + - '**Seifert SN**' + - Bushmaker T + - Fischer RJ + - van Doremalen N + - Lloyd-Smith JO + - Munster VJ + publisher: Emerging infectious diseases + date: '2020-06-08' + link: https://doi.org/10.3201/eid2609.202267 + type: paper + year: 2020 +- id: doi:10.1016/j.ajic.2020.06.004 + title: Shedding of multidrug-resistant gram-negative bacilli by colonized patients + during procedures and patient care activities. + authors: + - Heba Alhmidi + - Jennifer L Cadnum + - Sreelatha Koganti + - Annette L Jencson + - Robert A Bonomo + - Brigid M Wilson + - '**JeanMarie Mayer**' + - '**Matthew H Samore**' + - Curtis J Donskey + publisher: American journal of infection control + date: '2020-06-06' + link: https://doi.org/10.1016/j.ajic.2020.06.004 + type: paper + year: 2020 +- id: doi:10.3201/eid2609.201524 + title: Effectiveness of N95 Respirator Decontamination and Reuse against SARS-CoV-2 + Virus. + authors: + - Fischer RJ + - Morris DH + - van Doremalen N + - Sarchette S + - Matson MJ + - Bushmaker T + - Yinda CK + - '**Seifert SN**' + - Gamble A + - Williamson BN + - Judson SD + - de Wit E + - Lloyd-Smith JO + - Munster VJ + publisher: Emerging infectious diseases + date: '2020-06-03' + link: https://doi.org/10.3201/eid2609.201524 + type: paper + year: 2020 +- id: doi:10.2106/jbjs.oa.19.00080 + title: Cost-Effectiveness Analysis Comparing Proximal Row Carpectomy and Four-Corner + Arthrodesis. + authors: + - Minkyoung Yoo + - '**Richard E Nelson**' + - Damian A Illing + - Brook I Martin + - Andrew R Tyser + - Nikolas H Kazmers + publisher: JB & JS open access + date: '2020-06-02' + link: https://doi.org/10.2106/jbjs.oa.19.00080 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.42 + title: Evaluation of clinicians' knowledge, attitudes, and planned behaviors related + to an intervention to improve acute respiratory infection management. + authors: + - Hayli R Hruza + - Tania Velasquez + - Karl J Madaras-Kelly + - Katherine E Fleming-Dutra + - '**Matthew H Samore**' + - Jorie M Butler + publisher: Infection control and hospital epidemiology + date: '2020-06-01' + link: https://doi.org/10.1017/ice.2020.42 + type: paper + year: 2020 +- id: doi:10.1093/cid/ciz808 + title: 'Clinical and Epidemiological Aspects of Diphtheria: A Systematic Review + and Pooled Analysis.' + authors: + - Truelove SA + - '**Keegan LT**' + - Moss WJ + - Chaisson LH + - Macher E + - Azman AS + - Lessler J + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2020-06-01' + link: https://doi.org/10.1093/cid/ciz808 + type: paper + year: 2020 +- id: doi:10.1101/2020.05.14.095687 + title: On the automatic annotation of gene functions using observational data and + phylogenetic trees + authors: + - '**Vega Yon GG**' + - Thomas DC + - Morrison J + - Mi H + - Thomas PD + - Marjoram P + publisher: bioRxiv + date: '2020-05-14' + link: https://doi.org/10.1101/2020.05.14.095687 + type: preprint + year: 2020 +- id: doi:10.1101/2020.05.08.20095703 + title: The real time effective reproductive number for COVID-19 in the United States + authors: + - Zhang Y + - '**Keegan LT**' + - Yuqing Q + - Samore MH + publisher: medRxiv + date: '2020-05-13' + link: https://doi.org/10.1101/2020.05.08.20095703 + type: preprint + year: 2020 +- id: doi:10.1016/j.ajem.2020.04.076 + title: Prevalence of IgG antibodies to SARS-CoV-2 among emergency department employees. + authors: + - Troy Madsen + - Nicholas Levin + - Karla Niehus + - Karen Law + - '**Jeanmarie Mayer**' + - Matthew Chapman + - Austin Johnson + - Stephen Hartsell + publisher: The American journal of emergency medicine + date: '2020-05-03' + link: https://doi.org/10.1016/j.ajem.2020.04.076 + type: paper + year: 2020 +- id: doi:10.1093/infdis/jiz648 + title: Serological Evidence for Henipa-like and Filo-like Viruses in Trinidad Bats. + authors: + - Schulz JE + - '**Seifert SN**' + - Thompson JT + - Avanzato V + - Sterling SL + - Yan L + - Letko MC + - Matson MJ + - Fischer RJ + - Tremeau-Bravard A + - Seetahal JFR + - Ramkissoon V + - Foster J + - Goldstein T + - Anthony SJ + - Epstein JH + - Laing ED + - Broder CC + - Carrington CVF + - Schountz T + - Munster VJ + publisher: The Journal of infectious diseases + date: '2020-05-01' + link: https://doi.org/10.1093/infdis/jiz648 + type: paper + year: 2020 +- id: doi:10.1093/infdis/jiz429 + title: Rousettus aegyptiacus Bats Do Not Support Productive Nipah Virus Replication. + authors: + - '**Seifert SN**' + - Letko MC + - Bushmaker T + - Laing ED + - Saturday G + - Meade-White K + - van Doremalen N + - Broder CC + - Munster VJ + publisher: The Journal of infectious diseases + date: '2020-05-01' + link: https://doi.org/10.1093/infdis/jiz429 + type: paper + year: 2020 +- id: doi:10.1093/infdis/jiz576 + title: A Novel Field-Deployable Method for Sequencing and Analyses of Henipavirus + Genomes From Complex Samples on the MinION Platform. + authors: + - Yinda CK + - '**Seifert SN**' + - Macmenamin P + - van Doremalen N + - Kim L + - Bushmaker T + - de Wit E + - Quinones M + - Munster VJ + publisher: The Journal of infectious diseases + date: '2020-05-01' + link: https://doi.org/10.1093/infdis/jiz576 + type: paper + year: 2020 +- id: doi:10.1093/ofid/ofaa149 + title: Inpatient and Discharge Fluoroquinolone Prescribing in Veterans Affairs Hospitals + Between 2014 and 2017. + authors: + - Valerie M Vaughn + - Sarah M Seelye + - Xiao Qing Wang + - Wyndy L Wiitala + - '**Michael A Rubin**' + - Hallie C Prescott + publisher: Open forum infectious diseases + date: '2020-04-30' + link: https://doi.org/10.1093/ofid/ofaa149 + type: paper + year: 2020 +- id: doi:10.1145/3313831.3376381 + title: Evaluating Multivariate Network Visualization Techniques Using a Validated + Design and Crowdsourcing Approach + authors: + - Carolina Nobre + - Dylan Wootton + - Lane Harrison + - '**Alexander Lex**' + publisher: Proceedings of the 2020 CHI Conference on Human Factors in Computing + Systems + date: '2020-04-21' + link: http://dx.doi.org/10.1145/3313831.3376381 + type: paper + year: 2020 +- id: doi:10.1016/j.jcv.2020.104347 + title: Respiratory syncytial virus and influenza hospitalizations in Alaska native + adults. + authors: + - '**Nolen LD**' + - Seeman S + - Desnoyers C + - DeByle C + - Klejka J + - Bruden D + - Rudolph K + - Gerber SI + - Kim L + - Langley G + - Patel M + - Englund J + - Chu HY + - Tiesinga J + - Singleton R + publisher: 'Journal of clinical virology : the official publication of the Pan American + Society for Clinical Virology' + date: '2020-04-18' + link: https://doi.org/10.1016/j.jcv.2020.104347 + type: paper + year: 2020 +- id: doi:10.3390/ijerph17082750 + title: Naive Forecast for COVID-19 in Utah Based on the South Korea and Italy Models-the + Fluctuation between Two Extremes. + authors: + - Fares Qeadan + - Trenton Honda + - Lisa H Gren + - Jennifer Dailey-Provost + - L Scott Benson + - James A VanDerslice + - Christina A Porucznik + - A Blake Waters + - Steven Lacey + - '**Kimberley Shoaf**' + publisher: International journal of environmental research and public health + date: '2020-04-16' + link: https://doi.org/10.3390/ijerph17082750 + type: paper + year: 2020 +- id: doi:10.1101/2020.04.08.20058842 + title: The Epidemiological Implications of Jails for Community, Corrections Officer, + and Incarcerated Population Risks from COVID-19 + authors: + - '**Lofgren E**' + - Lum K + - Horowitz A + - Madubuonwu B + - Myers K + - Fefferman NH + publisher: medRxiv + date: '2020-04-14' + link: https://doi.org/10.1101/2020.04.08.20058842 + type: preprint + year: 2020 + group: featured + image: images/Jail.png +- id: doi:10.1093/cid/ciz910 + title: 'Antibiotic Prescribing Variability in a Large Urgent Care Network: A New + Target for Outpatient Stewardship.' + authors: + - Edward Stenehjem + - Anthony Wallin + - Katherine E Fleming-Dutra + - Whitney R Buckel + - Valoree Stanfield + - Kimberly D Brunisholz + - Jeff Sorensen + - '**Matthew H Samore**' + - Raj Srivastava + - Lauri A Hicks + - Adam L Hersh + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2020-04-10' + link: https://doi.org/10.1093/cid/ciz910 + type: paper + year: 2020 +- id: doi:10.1056/nejmoa1914433 + title: Multidrug-Resistant Bacterial Infections in U.S. Hospitalized Patients, 2012-2017. + authors: + - John A Jernigan + - Kelly M Hatfield + - Hannah Wolford + - '**Richard E Nelson**' + - Babatunde Olubajo + - Sujan C Reddy + - Natalie McCarthy + - Prabasaj Paul + - L Clifford McDonald + - Alex Kallen + - Anthony Fiore + - Michael Craig + - James Baggs + publisher: The New England journal of medicine + date: '2020-04-02' + link: https://doi.org/10.1056/nejmoa1914433 + type: paper + year: 2020 +- id: doi:10.1177/1473871619878085 + title: 'Taggle: Combining overview and details in tabular data visualizations' + authors: + - Katarina Furmanova + - Samuel Gratzl + - Holger Stitz + - Thomas Zichner + - Miroslava Jaresova + - '**Alexander Lex**' + - Marc Streit + publisher: Information Visualization + date: '2020-04-01' + link: http://dx.doi.org/10.1177/1473871619878085 + type: paper + year: 2020 +- id: doi:10.1001/jamainternmed.2019.7495 + title: Empirical Anti-MRSA vs Standard Antibiotic Therapy and Risk of 30-Day Mortality + in Patients Hospitalized for Pneumonia. + authors: + - Jones BE + - Ying J + - Stevens V + - Haroldsen C + - He T + - Nevers M + - Christensen MA + - '**Nelson RE**' + - Stoddard GJ + - Sauer BC + - Yarbrough PM + - '**Jones MM**' + - Goetz MB + - Greene T + - '**Samore MH**' + publisher: JAMA internal medicine + date: '2020-04-01' + link: https://doi.org/10.1001/jamainternmed.2019.7495 + type: paper + year: 2020 +- id: doi:10.31478/202003b + title: 'Duty to Plan: Health Care, Crisis Standards of Care, and Novel Coronavirus + SARS-CoV-2.' + authors: + - John L Hick + - Dan Hanfling + - Matthew K Wynia + - '**Andrew T Pavia**' + publisher: NAM perspectives + date: '2020-03-05' + link: https://doi.org/10.31478/202003b + type: paper + year: 2020 +- id: insightnet:93c06df5d59020c15298 + title: Workplace knowledge flows + authors: [] + publisher: The Quarterly Journal of Economics + date: '2020-03-01' + link: https://academic.oup.com/qje/article/135/3/1635/5821302 + type: paper + year: 2020 +- id: doi:10.1016/j.jksus.2020.01.002 + title: 'The effect of sour cherry consumption on blood pressure, IL-6, CRP, and + TNF-α levels: A systematic review and meta-analysis of randomized controlled trials + sour cherry consumption and blood pressure' + authors: + - Baizhi Han + - Akshaya Srikanth Bhagavathula + - '**Muhammed Rashid**' + - Manik Chhabra + - Cain Clark + - Hebatullah M. Abdulazeem + - Mohamed Abd-ElGawad + - Hamed Kord Varkaneh + - Jamal Rahmani + - Yong Zhang + publisher: Journal of King Saud University - Science + date: '2020-03-01' + link: https://doi.org/10.1016/j.jksus.2020.01.002 + type: paper + year: 2020 +- id: doi:10.1109/jsen.2019.2953938 + title: Multi-Sensor Time-Series Classification for Activity Tracking Under Variable + Length + authors: + - Skyler Norgaard + - Ramyar Saeedi + - '**Assefaw H. Gebremedhin**' + publisher: IEEE Sensors Journal + date: '2020-03-01' + link: https://doi.org/10.1109/JSEN.2019.2953938 + type: paper + year: 2020 +- id: doi:10.1109/tmc.2018.2878673 + title: A Signal-Level Transfer Learning Framework for Autonomous Reconfiguration + of Wearable Systems + authors: + - Ramyar Saeedi + - '**Assefaw H. Gebremedhin**' + publisher: IEEE Transactions on Mobile Computing + date: '2020-03-01' + link: https://doi.org/10.1109/TMC.2018.2878673 + type: paper + year: 2020 +- id: doi:10.1371/journal.pone.0229658 + title: A Bayesian approach for detecting a disease that is not being modeled. + authors: + - John M Aronis + - Jeffrey P Ferraro + - '**Per H Gesteland**' + - Fuchiang Tsui + - Ye Ye + - Michael M Wagner + - Gregory F Cooper + publisher: PloS one + date: '2020-02-28' + link: https://doi.org/10.1371/journal.pone.0229658 + type: paper + year: 2020 +- id: doi:10.3390/ijerph17051500 + title: Assessing the Potential Impact of a Long-Acting SkinDisinfectant in the Prevention + of Methicillin-Resistant Staphylococcus aureus Transmission. + authors: + - Short CT + - Mietchen MS + - '**Lofgren ET**' + publisher: International journal of environmental research and public health + date: '2020-02-26' + link: https://doi.org/10.3390/ijerph17051500 + type: paper + year: 2020 +- id: doi:10.1177/1090198120901497 + title: Diffusion/Contagion Processes on Social Networks. + authors: + - Valente TW + - '**Vega Yon GG**' + publisher: 'Health education & behavior : the official publication of the Society + for Public Health Education' + date: '2020-02-24' + link: https://doi.org/10.1177/1090198120901497 + type: paper + year: 2020 +- id: doi:10.2174/1574887114666191105152404 + title: 'Efficacy and Safety of Non-Steroidal Anti-Androgens in Patients with Metastatic + Prostate Cancer: Meta-Analysis of Randomized Controlled Trials.' + authors: + - '**Rashid M**' + - Ramesh M + - Shamshavali K + - Dang A + - Patel H + - Undela K + publisher: Reviews on recent clinical trials + date: '2020-02-14' + link: https://doi.org/10.2174/1574887114666191105152404 + type: paper + year: 2020 +- id: doi:10.32614/cran.package.ergmito + title: 'ergmito: Exponential Random Graph Models for Small Networks' + authors: + - '**George Vega Yon**' + publisher: 'CRAN: Contributed Packages' + date: '2020-02-01' + link: http://dx.doi.org/10.32614/cran.package.ergmito + type: paper + year: 2020 +- id: doi:10.1097/mlr.0000000000001243 + title: Provider Practice Competition and Adoption of Medicare's Oncology Care Model. + authors: + - Ali Jalali + - Christopher Martin + - '**Richard E Nelson**' + - Megan E Vanneman + - Brook I Martin + - Kathleen A Cooney + - Norman J Waitzman + - Brock O'Neil + publisher: Medical care + date: '2020-02-01' + link: https://doi.org/10.1097/mlr.0000000000001243 + type: paper + year: 2020 +- id: doi:10.1017/ice.2020.8 + title: Validation of the SHEA/IDSA severity criteria to predict poor outcomes among + inpatients and outpatients with Clostridioides difficile infection. + authors: + - Stevens VW + - Shoemaker HE + - '**Jones MM**' + - Jones BE + - '**Nelson RE**' + - '**Khader K**' + - '**Samore MH**' + - '**Rubin MA**' + publisher: Infection control and hospital epidemiology + date: '2020-01-30' + link: https://doi.org/10.1017/ice.2020.8 + type: paper + year: 2020 +- id: doi:10.1093/ofid/ofz554 + title: 'Inpatient Management of Uncomplicated Skin and Soft Tissue Infections in + 34 Veterans Affairs Medical Centers: A Medication Use Evaluation.' + authors: + - Sutton JD + - Carico R + - Burk M + - '**Jones MM**' + - Wei X + - Neuhauser MM + - Goetz MB + - Echevarria KL + - Spivak ES + - Cunningham FE + - Skin and Soft Tissue Infection Medication Use Evaluation Group + publisher: Open forum infectious diseases + date: '2020-01-27' + link: https://doi.org/10.1093/ofid/ofz554 + type: paper + year: 2020 +- id: doi:10.1016/j.seizure.2020.01.002 + title: 'Levetiracetam and cutaneous adverse reactions: A systematic review of descriptive + studies.' + authors: + - '**Rashid M**' + - Rajan AK + - Chhabra M + - Kashyap A + publisher: Seizure + date: '2020-01-03' + link: https://doi.org/10.1016/j.seizure.2020.01.002 + type: paper + year: 2020 +- id: doi:10.1001/jamanetworkopen.2019.17597 + title: 'Incidence and Outcomes Associated With Clostridium difficile Infections: + A Systematic Review and Meta-analysis.' + authors: + - Alexandre R Marra + - Eli N Perencevich + - '**Richard E Nelson**' + - Matthew Samore + - '**Karim Khader**' + - Hsiu-Yin Chiang + - Margaret L Chorazy + - Loreen A Herwaldt + - Daniel J Diekema + - Michelle F Kuxhausen + - Amy Blevins + - Melissa A Ward + - Jennifer S McDanel + - Rajeshwari Nair + - Erin Balkenende + - Marin L Schweizer + publisher: JAMA network open + date: '2020-01-03' + link: https://doi.org/10.1001/jamanetworkopen.2019.17597 + type: paper + year: 2020 +- id: doi:10.1093/cid/ciz568 + title: Reply to Verweij et al. + authors: + - Timothy M Uyeki + - Michael G Ison + - Cameron R Wolfe + - '**Andrew T Pavia**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2020-01-02' + link: https://doi.org/10.1093/cid/ciz568 + type: paper + year: 2020 +- id: doi:10.2174/1574884714666191122103953 + title: 'Prevalence and Predictors of Self-Medication Practices in India: A Systematic + Literature Review and Meta-Analysis.' + authors: + - '**Rashid M**' + - Chhabra M + - Kashyap A + - Undela K + - Gudi SK + publisher: Current clinical pharmacology + date: '2020-01-01' + link: https://doi.org/10.2174/1574884714666191122103953 + type: paper + year: 2020 +- id: doi:10.1093/milmed/usz223 + title: Predicting and Planning for Musculoskeletal Service-Connected Disabilities + in VA Using Disability for Active Duty OEF/OIF Military Service Members. + authors: + - Gundlapalli AV + - '**Redd AM**' + - Suo Y + - Pettey WBP + - Brignone E + - Chin DL + - Walker LE + - Poltavskiy EA + - Janak JC + - Howard JT + - Sosnov JA + - Stewart IJ + publisher: Military medicine + date: '2020-01-01' + link: https://doi.org/10.1093/milmed/usz223 + type: paper + year: 2020 +- id: doi:10.2174/1574886315666200516175053 + title: 'Linezolid Induced Skin Reactions in a Multi Drug Resistant Infective Endocarditis + Patient: A Rare Case.' + authors: + - Rajan AK + - Kashyap A + - Chhabra M + - '**Rashid M**' + publisher: Current drug safety + date: '2020-01-01' + link: https://doi.org/10.2174/1574886315666200516175053 + type: paper + year: 2020 +- id: doi:10.1109/tensymp50017.2020.9230921 + title: Extraction of Sequence from Bangla Handwritten Numerals and Recognition Using + LSTM + authors: + - Shadmaan Hye + - Md. Rahat-uz-Zaman + - M. A. H. Akhand + publisher: 2020 IEEE Region 10 Symposium (TENSYMP) + date: '2020-01-01' + link: https://doi.org/10.1109/tensymp50017.2020.9230921 + type: paper + year: 2020 +- id: doi:10.1093/milmed/usz208 + title: Exploring Disparities in Awarding VA Service-Connected Disability for Post-Traumatic + Stress Disorder for Active Duty Military Service Members from Recent Conflicts + in Iraq and Afghanistan. + authors: + - '**Redd AM**' + - Gundlapalli AV + - Suo Y + - Pettey WBP + - Brignone E + - Chin DL + - Walker LE + - Poltavskiy EA + - Janak JC + - Howard JT + - Sosnov JA + - Stewart IJ + publisher: Military medicine + date: '2020-01-01' + link: https://doi.org/10.1093/milmed/usz208 + type: paper + year: 2020 +- id: doi:10.1093/gigascience/giz137 + title: Compartment and hub definitions tune metabolic networks for metabolomic interpretations. + authors: + - Waller TC + - Berg JA + - '**Lex A**' + - Chapman BE + - Rutter J + publisher: GigaScience + date: '2020-01-01' + link: https://doi.org/10.1093/gigascience/giz137 + type: paper + year: 2020 +- id: insightnet:95d0e81ef73efcc1aac5 + title: 'Antibiotic resistance: Is youtube a quality communicator?' + authors: [] + publisher: International Journal of Scientific and Technology Research + date: '2020-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85083491942&partnerID=MN8TOARS + type: paper + year: 2020 +- id: doi:10.32614/cran.package.slurmr + title: 'slurmR: A Lightweight Wrapper for ''Slurm''' + authors: + - '**George Vega Yon**' + publisher: 'CRAN: Contributed Packages' + date: '2019-12-30' + link: http://dx.doi.org/10.32614/cran.package.slurmr + type: paper + year: 2019 +- id: doi:10.1109/icecte48615.2019.9303563 + title: Audio Future Block Prediction with Conditional Generative Adversarial Network + authors: + - Md. Rahat-uz-Zaman + - Shadmaan Hye + - Mahmudul Hasan + publisher: 2019 3rd International Conference on Electrical, Computer & Telecommunication + Engineering (ICECTE) + date: '2019-12-26' + link: http://dx.doi.org/10.1109/icecte48615.2019.9303563 + type: paper + year: 2019 +- id: doi:10.1016/j.whi.2019.11.001 + title: 'Sex and the Diagnostic Pathway to Bladder Cancer among Veterans: No Evidence + of Disparity.' + authors: + - Kristine E Lynch + - Benjamin Viernes + - '**Karim Khader**' + - Scott L DuVall + - Florian R Schroeck + publisher: 'Women''s health issues : official publication of the Jacobs Institute + of Women''s Health' + date: '2019-12-24' + link: https://doi.org/10.1016/j.whi.2019.11.001 + type: paper + year: 2019 +- id: doi:10.1111/1755-0998.13121 + title: Modelling multilocus selection in an individual-based, spatially-explicit + landscape genetics framework. + authors: + - '**Landguth EL**' + - Forester BR + - Eckert AJ + - Shirk AJ + - Menon M + - Whipple A + - Day CC + - Cushman SA + publisher: Molecular ecology resources + date: '2019-12-19' + link: https://doi.org/10.1111/1755-0998.13121 + type: paper + year: 2019 +- id: doi:10.1038/s41393-019-0393-y title: Multidrug-resistant gram-negative organisms and association with 1-year mortality, - readmission, and length of stay in Veterans with spinal cord injuries and disorders - authors: - - Swetha Ramanathan - - Margaret A. Fitzpatrick - - Katie J. Suda - - Stephen P. Burns - - Makoto M. Jones - - Sherri L. LaVela - - Charlesnika T. Evans - publisher: Spinal Cord + readmission, and length of stay in Veterans with spinal cord injuries and disorders. + authors: + - Ramanathan S + - Fitzpatrick MA + - Suda KJ + - Burns SP + - '**Jones MM**' + - LaVela SL + - Evans CT + publisher: Spinal cord date: '2019-12-11' - link: https://doi.org/hbz8b6 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIZ1053 - title: "Pneumonia and Electronic Health Records\u2014A Window Into Disease, A Mirror\ - \ of Our Behavior, or Just Another Streetlight?" - authors: - - Barbara Ellen Jones - - Makoto Murakami Jones - publisher: Clinical Infectious Diseases - date: '2019-10-29' - link: https://doi.org/hbz8b7 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000556622802562 - title: 'Potential Impact of 2019 Community Acquired Pneumonia Guidelines on Culturing - and Antibiotic Selection: An Analysis of 114 VA Medical Centers' + link: https://doi.org/10.1038/s41393-019-0393-y + type: paper + year: 2019 +- id: doi:10.1016/j.ajic.2019.09.019 + title: Reinforcement of an infection control bundle targeting prevention practices + for Clostridioides difficile in Veterans Health Administration nursing homes. + authors: + - '**Jeanmarie Mayer**' + - Nimalie D Stone + - Molly Leecaster + - Nan Hu + - Warren Pettey + - Matthew Samore + - Susan M Pacheco + - Susan Sambol + - Curtis Donskey + - Annette Jencson + - Kalpana Gupta + - Judith Strymish + - David Johnson + - Christopher Woods + - Edward Young + - L Clifford McDonald + - Dale Gerding + publisher: American journal of infection control + date: '2019-12-05' + link: https://doi.org/10.1016/j.ajic.2019.09.019 + type: paper + year: 2019 +- id: doi:10.1016/j.cegh.2019.02.001 + title: 'Satisfaction towards the services provided by the community pharmacist in + north-west India: A qualitative exploratory study' + authors: + - Manik Chhabra + - Sai Krishna Gudi + - '**Muhammed Rashid**' + - Aditya Goyal + - Raman Kumar Tripathi + - Ananth Kashyap + publisher: Clinical Epidemiology and Global Health + date: '2019-12-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85061353755&partnerID=MN8TOARS + type: paper + year: 2019 +- id: doi:10.1016/j.cegh.2019.01.006 + title: Assessment of the impact of pharmacist-led face-to-face counselling on HIV/AIDS + among school & college going students, and infected patients in south India + authors: + - Sai Krishna Gudi + - Manik Chhabra + - '**Muhammed Rashid**' + publisher: Clinical Epidemiology and Global Health + date: '2019-12-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85060080584&partnerID=MN8TOARS + type: paper + year: 2019 +- id: doi:10.1109/iccit48885.2019.9038550 + title: Agglomerative Clustering of Handwritten Numerals to Determine Similarity + of Different Languages + authors: + - Md. Rahat-uz-Zaman + - Shadmaan Hye + publisher: 2019 22nd International Conference on Computer and Information Technology + (ICCIT) + date: '2019-12-01' + link: https://doi.org/10.1109/iccit48885.2019.9038550 + type: paper + year: 2019 +- id: doi:10.1109/icspc47137.2019.9068027 + title: A Multi-Modal Human Machine Interface for Controlling a Smart Wheelchair + authors: + - Saifuddin Mahmud + - Xiangxu Lin + - Jong-Hoon Kim + - Hasib Iqbal + - MD Rahat-Uz-Zaman + - Sakib Reza + - M Asifur Rahman + publisher: 2019 IEEE 7th Conference on Systems, Process and Control (ICSPC) + date: '2019-12-01' + link: https://doi.org/10.1109/icspc47137.2019.9068027 + type: paper + year: 2019 +- id: doi:10.1111/jam.14499 + title: Identifying predictors of antimicrobial exposure in hospitalized patients + using a machine learning approach. + authors: + - Chowdhury AS + - '**Lofgren ET**' + - Moehring RW + - Broschat SL + publisher: Journal of applied microbiology + date: '2019-11-12' + link: https://doi.org/10.1111/jam.14499 + type: paper + year: 2019 +- id: doi:10.5530/ijper.53.4s.146 + title: 'Genotype-8: A modern family member of hepatitis C virus' + authors: + - Sai Krishna Gudi + - Manik Chhabra + - '**Muhammed Rashid**' + publisher: Indian Journal of Pharmaceutical Education and Research + date: '2019-11-11' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85075211857&partnerID=MN8TOARS + type: paper + year: 2019 +- id: doi:10.1513/annalsats.201902-162oc + title: Potential Impact of Hospital-acquired Pneumonia Guidelines on Empiric Antibiotics. + An Evaluation of 113 Veterans Affairs Medical Centers. + authors: + - Bostwick AD + - Jones BE + - Paine R + - Goetz MB + - Samore M + - '**Jones M**' + publisher: Annals of the American Thoracic Society + date: '2019-11-01' + link: https://doi.org/10.1513/annalsats.201902-162oc + type: paper + year: 2019 +- id: doi:10.1097/pec.0000000000001968 + title: Isolated Increased Intracranial Pressure and Unilateral Papilledema in an + Infant With Traumatic Brain Injury and Nondepressed Basilar Skull Fracture. + authors: + - Jennifer Dunnick + - '**Per Gesteland**' + publisher: Pediatric emergency care + date: '2019-11-01' + link: https://doi.org/10.1097/pec.0000000000001968 + type: paper + year: 2019 +- id: doi:10.20411/pai.v4i2.291 + title: Environmental Contamination with Candida Species in Multiple Hospitals Including + a Tertiary Care Hospital with a Candida auris Outbreak. + authors: + - Jessica Kumar + - Brandon Eilertson + - Jennifer L Cadnum + - Chauna S Whitlow + - Annette L Jencson + - Nasia Safdar + - Sarah L Krein + - Windy D Tanner + - '**JeanMarie Mayer**' + - '**Matthew H Samore**' + - Curtis J Donskey + publisher: Pathogens & immunity + date: '2019-10-28' + link: https://doi.org/10.20411/pai.v4i2.291 + type: paper + year: 2019 +- id: doi:10.1002/widm.1334 + title: An introduction to algorithmic differentiation + authors: + - '**Assefaw H. Gebremedhin**' + - Andrea Walther + publisher: WIREs Data Mining and Knowledge Discovery + date: '2019-10-24' + link: https://doi.org/10.1002/widm.1334 + type: paper + year: 2019 +- id: doi:10.1080/00222216.2019.1617646 + title: 'Preventing leisure from being overlooked: Intersecting leisure and prevention + sciences' + authors: + - '**Elizabeth H. Weybright**' + - Linda L. Caldwell + - Raven H. Weaver + publisher: Journal of Leisure Research + date: '2019-10-20' + link: https://doi.org/10.1080/00222216.2019.1617646 + type: paper + year: 2019 +- id: doi:10.1016/j.ajic.2019.08.031 + title: A qualitative study of factors affecting personal protective equipment use + among health care personnel. + authors: + - Molly Harrod + - Lauren E Weston + - Lynn Gregory + - Laura Petersen + - '**Jeanmarie Mayer**' + - Frank A Drews + - Sarah L Krein + publisher: American journal of infection control + date: '2019-10-11' + link: https://doi.org/10.1016/j.ajic.2019.08.031 + type: paper + year: 2019 +- id: doi:10.21105/joss.01493 + title: 'slurmR: A lightweight wrapper for HPC with Slurm.' + authors: + - '**Vega Yon GG**' + - Marjoram P + publisher: Journal of open source software + date: '2019-10-08' + link: https://doi.org/10.21105/joss.01493 + type: paper + year: 2019 +- id: doi:10.1093/ofid/ofz432 + title: Diagnosis and Antibiotic Management of Otitis Media and Otitis Externa in + United States Veterans. + authors: + - Pontefract B + - Nevers M + - Fleming-Dutra KE + - Hersh A + - '**Samore M**' + - Madaras-Kelly K + publisher: Open forum infectious diseases + date: '2019-10-04' + link: https://doi.org/10.1093/ofid/ofz432 + type: paper + year: 2019 +- id: doi:10.1001/jamanetworkopen.2019.13823 + title: 'Effect of Frequency of Changing Point-of-Use Reminder Signs on Health Care + Worker Hand Hygiene Adherence: A Cluster Randomized Clinical Trial.' + authors: + - Mark W Vander Weg + - Eli N Perencevich + - Amy M J O'Shea + - Michael P Jones + - Mary S Vaughan Sarrazin + - Carrie L Franciscus + - Cassie Cunningham Goedken + - Gio J Baracco + - Suzanne F Bradley + - Jose Cadena + - Graeme N Forrest + - Kalpana Gupta + - Daniel J Morgan + - '**Michael A Rubin**' + - Joseph Thurn + - Marvin J Bittner + - Heather Schacht Reisinger + publisher: JAMA network open + date: '2019-10-02' + link: https://doi.org/10.1001/jamanetworkopen.2019.13823 + type: paper + year: 2019 +- id: doi:10.1109/vast47406.2019.8986909 + title: 'Origraph: Interactive Network Wrangling' + authors: + - Alex Bigelow + - Carolina Nobre + - Miriah Meyer + - '**Alexander Lex**' + publisher: 2019 IEEE Conference on Visual Analytics Science and Technology (VAST) + date: '2019-10-01' + link: http://dx.doi.org/10.1109/vast47406.2019.8986909 + type: paper + year: 2019 +- id: doi:10.1371/journal.pone.0223139 + title: Lek-associated movement of a putative Ebolavirus reservoir, the hammer-headed + fruit bat (Hypsignathus monstrosus), in northern Republic of Congo. + authors: + - Olson SH + - Bounga G + - Ondzie A + - Bushmaker T + - '**Seifert SN**' + - Kuisma E + - Taylor DW + - Munster VJ + - Walzer C + publisher: PloS one + date: '2019-10-01' + link: https://doi.org/10.1371/journal.pone.0223139 + type: paper + year: 2019 +- id: doi:10.1371/journal.pcbi.1007244 + title: Ten simple rules to create biological network figures for communication. + authors: + - Marai GE + - Pinaud B + - Bühler K + - '**Lex A**' + - Morris JH + publisher: PLoS computational biology + date: '2019-09-26' + link: https://doi.org/10.1371/journal.pcbi.1007244 + type: paper + year: 2019 +- id: doi:10.5210/ojphi.v11i2.9952 + title: The design and evaluation of a Bayesian system for detecting and characterizing + outbreaks of influenza. + authors: + - Nicholas E Millett + - John M Aronis + - Michael M Wagner + - Fuchiang Tsui + - Ye Ye + - Jeffrey P Ferraro + - Peter J Haug + - '**Per H Gesteland**' + - Gregory F Cooper + publisher: Online journal of public health informatics + date: '2019-09-19' + link: https://doi.org/10.5210/ojphi.v11i2.9952 + type: paper + year: 2019 +- id: doi:10.1093/cid/ciz527 + title: Understanding Workflow and Personal Protective Equipment Challenges Across + Different Healthcare Personnel Roles. + authors: + - Molly Harrod + - Laura Petersen + - Lauren E Weston + - Lynn Gregory + - '**Jeanmarie Mayer**' + - '**Matthew H Samore**' + - Frank A Drews + - Sarah L Krein + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2019-09-13' + link: https://doi.org/10.1093/cid/ciz527 + type: paper + year: 2019 +- id: doi:10.1093/cid/ciz557 + title: Model-based Assessment of the Effect of Contact Precautions Applied to Surveillance-detected + Carriers of Carbapenemase-producing Enterobacteriaceae in Long-term Acute Care + Hospitals. + authors: + - '**Damon J A Toth**' + - '**Karim Khader**' + - Alexander Beams + - '**Matthew H Samore**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2019-09-13' + link: https://doi.org/10.1093/cid/ciz557 + type: paper + year: 2019 +- id: doi:10.1093/cid/ciz520 + title: Evaluation of a Redesigned Personal Protective Equipment Gown. + authors: + - Frank A Drews + - Diane Mulvey + - Kristina Stratford + - '**Matthew H Samore**' + - '**Jeanmarie Mayer**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2019-09-13' + link: https://doi.org/10.1093/cid/ciz520 + type: paper + year: 2019 +- id: doi:10.1515/jbcpp-2019-0133 + title: Prescribing pattern of antihypertensive medication and adherence to Joint + National Commission-8 guidelines in a rural tertiary care Indian teaching hospital. + authors: + - Venkataraman R + - '**Rashid M**' + - Shashikantha B + - Soumya A + - Vijayan G + - Manuel GG + - Islam S + publisher: Journal of basic and clinical physiology and pharmacology + date: '2019-09-10' + link: https://doi.org/10.1515/jbcpp-2019-0133 + type: paper + year: 2019 +- id: doi:10.1016/j.intimp.2019.105868 + title: 'Changing trends in IVIG use in pediatric patients: A retrospective review + of practices in a network of major USA pediatric hospitals.' + authors: + - Alfred Balch + - Jacob Wilkes + - Emily Thorell + - '**Andrew Pavia**' + - Catherine M T Sherwin + - Elena Y Enioutina + publisher: International immunopharmacology + date: '2019-09-02' + link: https://doi.org/10.1016/j.intimp.2019.105868 + type: paper + year: 2019 +- id: doi:10.1177/1536867x19874242 + title: 'parallel: A command for parallel computing' + authors: + - '**George G. Vega Yon**' + - Brian Quistorff + publisher: Stata Journal + date: '2019-09-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85073220911&partnerID=MN8TOARS + type: paper + year: 2019 +- id: doi:10.1177/0022146519870521 + title: Smoking Diffusion through Networks of Diverse, Urban American Adolescents + over the High School Period. + authors: + - de la Haye K + - Shin H + - '**Vega Yon GG**' + - Valente TW + publisher: Journal of health and social behavior + date: '2019-09-01' + link: https://doi.org/10.1177/0022146519870521 + type: paper + year: 2019 +- id: doi:10.1098/rstb.2018.0339 + title: 'Long-term wildlife mortality surveillance in northern Congo: a model for + the detection of Ebola virus disease epizootics.' + authors: + - Kuisma E + - Olson SH + - Cameron KN + - Reed PE + - Karesh WB + - Ondzie AI + - Akongo MJ + - Kaba SD + - Fischer RJ + - '**Seifert SN**' + - Muñoz-Fontela C + - Becker-Ziaja B + - Escudero-Pérez B + - Goma-Nkoua C + - Munster VJ + - Mombouli JV + publisher: Philosophical transactions of the Royal Society of London. Series B, + Biological sciences + date: '2019-08-12' + link: https://doi.org/10.1098/rstb.2018.0339 + type: paper + year: 2019 +- id: doi:10.1097/qco.0000000000000564 + title: 'One hundred years after the 1918 pandemic: new concepts for preparing for + influenza pandemics.' + authors: + - '**Andrew Pavia**' + publisher: Current opinion in infectious diseases + date: '2019-08-01' + link: https://doi.org/10.1097/qco.0000000000000564 + type: paper + year: 2019 +- id: doi:10.1109/tkde.2018.2863705 + title: Analysis of University Fitness Center Data Uncovers Interesting Patterns, + Enables Prediction + authors: + - Yunshu Du + - '**Assefaw H. Gebremedhin**' + - Matthew E. Taylor + publisher: IEEE Transactions on Knowledge and Data Engineering + date: '2019-08-01' + link: https://doi.org/10.1109/TKDE.2018.2863705 + type: paper + year: 2019 +- id: doi:10.21105/joss.01427 + title: 'fmcmc: A friendly MCMC framework.' + authors: + - '**Vega Yon GG**' + - Marjoram P + publisher: Journal of open source software + date: '2019-07-09' + link: https://doi.org/10.21105/joss.01427 + type: paper + year: 2019 +- id: doi:10.1080/14737167.2019.1637735 + title: Cost analysis of various branded versus generic chemotherapeutic agents used + for the treatment of early breast cancer- a deep insight from India. + authors: + - Kashyap A + - Balaji MN + - Chhabra M + - '**Rashid M**' + - Muragundi PM + publisher: Expert review of pharmacoeconomics & outcomes research + date: '2019-07-05' + link: https://doi.org/10.1080/14737167.2019.1637735 + type: paper + year: 2019 +- id: doi:10.1542/peds.2018-3090 + title: Prevalence, Risk Factors, and Outcomes of Bacteremic Pneumonia in Children. + authors: + - Cristin Q Fritz + - Kathryn M Edwards + - Wesley H Self + - Carlos G Grijalva + - Yuwei Zhu + - Sandra R Arnold + - Jonathan A McCullers + - Krow Ampofo + - '**Andrew T Pavia**' + - Richard G Wunderink + - Evan J Anderson + - Anna M Bramley + - Seema Jain + - Derek J Williams + publisher: Pediatrics + date: '2019-07-01' + link: https://doi.org/10.1542/peds.2018-3090 + type: paper + year: 2019 +- id: doi:10.1098/rstb.2018.0279 + title: Perfect counterfactuals for epidemic simulations. + authors: + - Kaminsky J + - '**Keegan LT**' + - Metcalf CJE + - Lessler J + publisher: Philosophical transactions of the Royal Society of London. Series B, + Biological sciences + date: '2019-07-01' + link: https://doi.org/10.1098/rstb.2018.0279 + type: paper + year: 2019 +- id: doi:10.1017/ice.2019.111 + title: Effectiveness of a multisite personal protective equipment (PPE)-free zone + intervention in acute care. + authors: + - Lindsay D Visnovsky + - Yue Zhang + - Molly K Leecaster + - Nasia Safdar + - Lauren Barko + - Candace Haroldsen + - Diane L Mulvey + - McKenna Nevers + - Catherine Shaughnessy + - Kristina M Stratford + - Frank A Drews + - '**Matthew H Samore**' + - '**Jeanmarie Mayer**' + publisher: Infection control and hospital epidemiology + date: '2019-07-01' + link: https://doi.org/10.1017/ice.2019.111 + type: paper + year: 2019 +- id: doi:10.1055/s-0039-1697561 + title: 'Assessment of Knowledge on Risk Factors, Warning Signs, and Early Treatment + Approaches of Stroke among Community Adults in North India: A Telephone Interview + Survey.' + authors: + - Chhabra M + - Gudi SK + - '**Rashid M**' + - Rohit 4 + - Sharma P + - Sharma S + - Khan H + publisher: Journal of neurosciences in rural practice + date: '2019-07-01' + link: https://doi.org/10.1055/s-0039-1697561 + type: paper + year: 2019 +- id: doi:10.1080/00222216.2019.1620144 + title: Parenting Practice, Leisure Experience, and Substance Use Among South African + Adolescents. + authors: + - Xie H + - '**Weybright EH**' + - Caldwell LL + - Wegner L + - Smith EA + publisher: Journal of leisure research + date: '2019-06-21' + link: https://doi.org/10.1080/00222216.2019.1620144 + type: paper + year: 2019 +- id: doi:10.1155/2019/8654741 + title: Risk-Based Prenatal Hepatitis C Testing Practices and Results, Alaska 2013-2016. + authors: + - '**Nolen LD**' + - Gustin C + - Seeman S + - Murphy N + - Truitt S + - Schillie S + - Bruce MG + - Bruden D + - Tiesinga J + - McMahon B + publisher: Canadian journal of gastroenterology & hepatology + date: '2019-06-02' + link: https://doi.org/10.1155/2019/8654741 + type: paper + year: 2019 +- id: doi:10.1111/cgf.13728 + title: The State of the Art in Visualizing Multivariate Networks + authors: + - C. Nobre + - M. Meyer + - M. Streit + - '**A. Lex**' + publisher: Computer Graphics Forum + date: '2019-06-01' + link: http://dx.doi.org/10.1111/cgf.13728 + type: paper + year: 2019 +- id: insightnet:ae5921ebba0628912a18 + title: Effects of psychotropic on the neutrophil-lymphocyte ratio in psychiatric + patients authors: [] - publisher: AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000556622802562 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2020.1008 - title: Risk Factors for Carbapenemase Producing-Carbapenem Resistant Enterobacteriaceae - in Those With CRE Positive Cultures + publisher: Asian Journal of Pharmaceutical and Clinical Research + date: '2019-06-01' + link: https://innovareacademics.in/journals/index.php/ajpcr/article/view/33251 + type: paper + year: 2019 +- id: doi:10.1097/mlr.0000000000001031 + title: Combining Natural Language Processing of Electronic Medical Notes With Administrative + Data to Determine Racial/Ethnic Differences in the Disclosure and Documentation + of Military Sexual Trauma in Veterans. + authors: + - Adi V Gundlapalli + - Audrey L Jones + - '**Andrew Redd**' + - Guy Divita + - Emily Brignone + - Warren B P Pettey + - Marjorie E Carter + - '**Matthew H Samore**' + - Rebecca K Blais + - Jamison D Fargo + publisher: Medical care + date: '2019-06-01' + link: https://doi.org/10.1097/mlr.0000000000001031 + type: paper + year: 2019 +- id: doi:10.1016/j.epidem.2019.100347 + title: Variation and trends in transmission dynamics of Methicillin-resistant Staphylococcus + aureus in veterans affairs hospitals and nursing homes. + authors: + - '**Khader K**' + - Thomas A + - '**Jones M**' + - '**Toth D**' + - Stevens V + - '**Samore MH**' + - CDC Modeling Infectious Diseases in Healthcare Program (MInD-Healthcare) + publisher: Epidemics + date: '2019-05-29' + link: https://doi.org/10.1016/j.epidem.2019.100347 + type: paper + year: 2019 +- id: doi:10.1080/00222216.2019.1588694 + title: '“To have healthy leisure is to have balance”: Young adults’ conceptualization + of healthy and unhealthy leisure' + authors: + - '**Elizabeth H. Weybright**' + - Julie S. Son + - Linda L. Caldwell + publisher: Journal of Leisure Research + date: '2019-05-27' + link: https://doi.org/10.1080/00222216.2019.1588694 + type: paper + year: 2019 +- id: doi:10.1080/10530789.2019.1619242 + title: 'Distance Matters: Geographic barriers to long acting reversible and permanent + contraception for homeless women Veterans.' + authors: + - Gawron LM + - Pettey WBP + - '**Redd AM**' + - Suo Y + - Turok DK + - Gundlapalli AV + publisher: Journal of social distress and the homeless + date: '2019-05-22' + link: https://doi.org/10.1080/10530789.2019.1619242 + type: paper + year: 2019 +- id: doi:10.4178/epih.e2019020 + title: 'Impact of pharmacist-led home medicines review services on drug-related + problems among the elderly population: a systematic review.' + authors: + - Gudi SK + - Kashyap A + - Chhabra M + - '**Rashid M**' + - Tiwari KK + publisher: Epidemiology and health + date: '2019-05-17' + link: https://doi.org/10.4178/epih.e2019020 + type: paper + year: 2019 +- id: pmid:31259022 + title: 'Natural Language Processing Accurately Identifies Dysphagia Indications + for Esophagogastroduodenoscopy Procedures in a Large US Integrated Healthcare + System: Implications for Classifying Overuse and Quality Measurement.' + authors: + - Tyler R McVay + - Cole Garrett G + - Peters Celena B + - Bielefeldt Klaus + - John C Fang + - Wendy W Chapman + - '**Matt H Samore**' + - Andrew J Gawron + publisher: AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits + on Translational Science + date: '2019-05-06' + link: https://pubmed.ncbi.nlm.nih.gov/31259022/ + type: paper + year: 2019 +- id: doi:10.1093/tbm/ibz051 + title: Sensing eating mimicry among family members. + authors: + - Bell BM + - Spruijt-Metz D + - '**Vega Yon GG**' + - Mondol AS + - Alam R + - Ma M + - Emi I + - Lach J + - Stankovic JA + - De la Haye K + publisher: Translational behavioral medicine + date: '2019-05-01' + link: https://doi.org/10.1093/tbm/ibz051 + type: paper + year: 2019 +- id: doi:10.1109/tbdata.2019.2913655 + title: Visualization of Big Spatial Data using Coresets for Kernel Density Estimates. + authors: + - Zheng Y + - Ou Y + - '**Lex A**' + - Phillips JM + publisher: IEEE transactions on big data + date: '2019-04-29' + link: https://doi.org/10.1109/tbdata.2019.2913655 + type: paper + year: 2019 +- id: doi:10.1016/j.ajic.2019.03.013 + title: Frequent and unexpected deviations from personal protective equipment guidelines + increase contamination risks. + authors: + - Diane Mulvey + - '**Jeanmarie Mayer**' + - Lindsay Visnovsky + - Matthew Samore + - Frank Drews + publisher: American journal of infection control + date: '2019-04-24' + link: https://doi.org/10.1016/j.ajic.2019.03.013 + type: paper + year: 2019 +- id: doi:10.1177/0018720819838090 + title: Interruptions and Delivery of Care in the Intensive Care Unit. + authors: + - Frank A Drews + - Boaz A Markewitz + - Gregory J Stoddard + - '**Matthew H Samore**' + publisher: Human factors + date: '2019-04-04' + link: https://doi.org/10.1177/0018720819838090 + type: paper + year: 2019 +- id: doi:10.1017/ice.2019.16 + title: 'Evaluation of uncomplicated acute respiratory tract infection management + in veterans: A national utilization review.' + authors: + - Bohan JG + - Madaras-Kelly K + - Pontefract B + - '**Jones M**' + - Neuhauser MM + - Bidwell Goetz M + - Burk M + - Cunningham F + - ARI Management Improvement Group + publisher: Infection control and hospital epidemiology + date: '2019-04-01' + link: https://doi.org/10.1017/ice.2019.16 + type: paper + year: 2019 +- id: doi:10.1542/hpeds.2018-0193 + title: 'Economic Burden of Home Antimicrobial Therapy: OPAT Versus Oral Therapy.' + authors: + - Nathan M Krah + - Tyler Bardsley + - Richard Nelson + - Lawanda Esquibel + - Mark Crosby + - Carrie L Byington + - '**Andrew T Pavia**' + - Adam L Hersh + publisher: Hospital pediatrics + date: '2019-04-01' + link: https://doi.org/10.1542/hpeds.2018-0193 + type: paper + year: 2019 +- id: doi:10.1177/0018720819833214 + title: Human Factors Engineering Contributions to Infection Prevention and Control. + authors: + - Frank A Drews + - Lindsay C Visnovsky + - '**Jeanmarie Mayer**' + publisher: Human factors + date: '2019-03-18' + link: https://doi.org/10.1177/0018720819833214 + type: paper + year: 2019 +- id: doi:10.15585/mmwr.mm6809e2 + title: 'Vital Signs: Trends in Staphylococcus aureus Infections in Veterans Affairs + Medical Centers - United States, 2005-2017.' + authors: + - '**Jones M**' + - Jernigan JA + - Evans ME + - Roselle GA + - Hatfield KM + - Samore MH + publisher: MMWR. Morbidity and mortality weekly report + date: '2019-03-08' + link: https://doi.org/10.15585/mmwr.mm6809e2 + type: paper + year: 2019 +- id: doi:10.1093/cid/ciy874 + title: 'Clinical Practice Guidelines by the Infectious Diseases Society of America: + 2018 Update on Diagnosis, Treatment, Chemoprophylaxis, and Institutional Outbreak + Management of Seasonal Influenzaa.' + authors: + - Timothy M Uyeki + - Henry H Bernstein + - John S Bradley + - Janet A Englund + - Thomas M File + - Alicia M Fry + - Stefan Gravenstein + - Frederick G Hayden + - Scott A Harper + - Jon Mark Hirshon + - Michael G Ison + - B Lynn Johnston + - Shandra L Knight + - Allison McGeer + - Laura E Riley + - Cameron R Wolfe + - Paul E Alexander + - '**Andrew T Pavia**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2019-03-05' + link: https://doi.org/10.1093/cid/ciy874 + type: paper + year: 2019 +- id: doi:10.1017/ice.2019.24 + title: Laboratory practices for identification and reporting of carbapenem-resistant + Enterobacteriaceae in Department of Veterans Affairs facilities + authors: + - Fitzpatrick MA + - Suda KJ + - Ramanathan S + - Guihan M + - Brown C + - Safdar N + - Evans M + - '**Jones MM**' + - Pfeiffer CD + - Klutts JS + - Icardi M + - Perencevich E + - Rubin M + - Evans CT + - QUERI CARRIAGE Program + publisher: INFECTION CONTROL & HOSPITAL EPIDEMIOLOGY + date: '2019-03-04' + link: https://doi.org/10.1017/ice.2019.24 + type: paper + year: 2019 +- id: doi:10.1016/j.jue.2018.08.004 + title: The optimal distribution of population across cities + authors: + - David Albouy + - Kristian Behrens + - Frédéric Robert-Nicoud + - '**Nathan Seegert**' + publisher: Journal of Urban Economics + date: '2019-03-01' + link: https://doi.org/10.1016/j.jue.2018.08.004 + type: paper + year: 2019 +- id: doi:10.1055/s-0039-1687862 + title: Composer-Visual Cohort Analysis of Patient Outcomes. + authors: + - Rogers J + - Spina N + - Neese A + - Hess R + - Brodke D + - '**Lex A**' + publisher: Applied clinical informatics + date: '2019-03-01' + link: https://doi.org/10.1055/s-0039-1687862 + type: paper + year: 2019 +- id: doi:10.1111/ijd.14411 + title: 'Valproic acid and Stevens-Johnson syndrome: a systematic review of descriptive + studies.' + authors: + - '**Rashid M**' + - Kashyap A + - Undela K + publisher: International journal of dermatology + date: '2019-02-27' + link: https://doi.org/10.1111/ijd.14411 + type: paper + year: 2019 +- id: doi:10.1017/ice.2018.342 + title: Shedding of methicillin-resistant Staphylococcus aureus by colonized patients + during procedures and patient care activities. + authors: + - Heba Alhmidi + - Jennifer L Cadnum + - Sreelatha Koganti + - Annette L Jencson + - Joseph D Rutter + - Robert A Bonomo + - Brigid M Wilson + - '**JeanMarie Mayer**' + - '**Matthew H Samore**' + - Curtis J Donskey + publisher: Infection control and hospital epidemiology + date: '2019-02-19' + link: https://doi.org/10.1017/ice.2018.342 + type: paper + year: 2019 +- id: doi:10.1016/j.chest.2019.02.008 + title: ED Door-to-Antibiotic Time and Long-term Mortality in Sepsis. + authors: + - Ithan D Peltan + - Samuel M Brown + - Joseph R Bledsoe + - Jeffrey Sorensen + - '**Matthew H Samore**' + - Todd L Allen + - Catherine L Hough + publisher: Chest + date: '2019-02-16' + link: https://doi.org/10.1016/j.chest.2019.02.008 + type: paper + year: 2019 +- id: doi:10.1093/cid/ciy669 + title: How Clean Is the Linen at My Hospital? The Mucorales on Unclean Linen Discovery + Study of Large United States Transplant and Cancer Centers. + authors: + - Alexander J Sundermann + - Cornelius J Clancy + - A William Pasculle + - Guojun Liu + - Richard B Cumbie + - Eileen Driscoll + - Ashley Ayres + - Lisa Donahue + - Steven A Pergam + - Lilian Abbo + - David R Andes + - Pranatharthi Chandrasekar + - Alison L Galdys + - Kimberly E Hanson + - Kieren A Marr + - '**Jeanmarie Mayer**' + - Seema Mehta + - Michele I Morris + - John Perfect + - Sanjay G Revankar + - Becky Smith + - Sankar Swaminathan + - George R Thompson + - Merin Varghese + - Jose Vazquez + - Estella Whimbey + - John R Wingard + - M Hong Nguyen + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2019-02-15' + link: https://doi.org/10.1093/cid/ciy669 + type: paper + year: 2019 +- id: doi:10.1093/cid/ciy507 + title: Methicillin-resistant Staphylococcus aureus Colonization and Pre- and Post-hospital + Discharge Infection Risk. + authors: + - Nelson RE + - Evans ME + - Simbartl L + - '**Jones M**' + - '**Samore MH**' + - Kralovic SM + - Roselle GA + - '**Rubin MA**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2019-02-01' + link: https://doi.org/10.1093/cid/ciy507 + type: paper + year: 2019 +- id: doi:10.1111/nmo.13533 + title: Risk factors for upper and lower functional gastrointestinal disorders in + Persian Gulf War Veterans during and post-deployment. + authors: + - Ashok K Tuteja + - Nicholas J Talley + - Gregory J Stoddard + - '**Matthew H Samore**' + - G Nicholas Verne + publisher: Neurogastroenterology and motility + date: '2019-01-29' + link: https://doi.org/10.1111/nmo.13533 + type: paper + year: 2019 +- id: doi:10.1016/j.socscimed.2019.01.008 + title: 'Network influences on policy implementation: Evidence from a global health + treaty.' + authors: + - Valente TW + - Pitts S + - Wipfli H + - '**Vega Yon GG**' + publisher: Social science & medicine (1982) + date: '2019-01-09' + link: https://doi.org/10.1016/j.socscimed.2019.01.008 + type: paper + year: 2019 +- id: doi:10.1007/978-3-030-33723-0_22 + title: Topologically-Guided Color Image Enhancement + authors: + - Junyi Tu + - '**Paul Rosen**' + publisher: Lecture Notes in Computer Science + date: '2019-01-01' + link: https://doi.org/10.1007/978-3-030-33723-0_22 + type: paper + year: 2019 +- id: insightnet:c727ed868a6114d73a43 + title: Regional Variations in Documentation of Sexual Trauma Concepts in Electronic + Medical Records in the United States Veterans Health Administration + authors: [] + publisher: AMIA ... Annual Symposium proceedings. AMIA Symposium + date: '2019-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85083755452&partnerID=MN8TOARS + type: paper + year: 2019 +- id: doi:10.1007/978-3-030-33720-9_8 + title: 'Propagate and Pair: A Single-Pass Approach to Critical Point Pairing in + Reeb Graphs' + authors: + - Junyi Tu + - Mustafa Hajij + - '**Paul Rosen**' + publisher: Lecture Notes in Computer Science + date: '2019-01-01' + link: https://doi.org/10.1007/978-3-030-33720-9_8 + type: paper + year: 2019 +- id: doi:10.1093/cid/ciy419 + title: Mycoplasma pneumoniae Among Children Hospitalized With Community-acquired + Pneumonia. + authors: + - Preeta K Kutty + - Seema Jain + - Thomas H Taylor + - Anna M Bramley + - Maureen H Diaz + - Krow Ampofo + - Sandra R Arnold + - Derek J Williams + - Kathryn M Edwards + - Jonathan A McCullers + - '**Andrew T Pavia**' + - Jonas M Winchell + - Stephanie J Schrag + - Lauri A Hicks + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2019-01-01' + link: https://doi.org/10.1093/cid/ciy419 + type: paper + year: 2019 +- id: doi:10.2174/1574884714666190112151202 + title: 'Efficacy and Safety of Nilutamide in Patients with Metastatic Prostate Cancer + who Underwent Orchiectomy: A Systematic Review and Metaanalysis.' + authors: + - '**Rashid M**' + - Shamshavali K + - Chhabra M + publisher: Current clinical pharmacology + date: '2019-01-01' + link: https://doi.org/10.2174/1574884714666190112151202 + type: paper + year: 2019 +- id: doi:10.1016/j.ajic.2018.10.015 + title: 'Forming a successful public health collaborative: A qualitative study.' + authors: + - '**Jeanmarie Mayer**' + - Stacey Slager + - Peter Taber + - Lindsay Visnovsky + - Charlene Weir + publisher: American journal of infection control + date: '2018-12-21' + link: https://doi.org/10.1016/j.ajic.2018.10.015 + type: paper + year: 2018 +- id: doi:10.1016/j.annemergmed.2018.10.007 + title: Emergency Department Crowding Is Associated With Delayed Antibiotics for + Sepsis. + authors: + - Ithan D Peltan + - Joseph R Bledsoe + - Thomas A Oniki + - Jeffrey Sorensen + - Al R Jephson + - Todd L Allen + - '**Matthew H Samore**' + - Catherine L Hough + - Samuel M Brown + publisher: Annals of emergency medicine + date: '2018-11-22' + link: https://doi.org/10.1016/j.annemergmed.2018.10.007 + type: paper + year: 2018 +- id: doi:10.1017/ice.2018.277 + title: 'Testing a novel audit and feedback method for hand hygiene compliance: A + multicenter quality improvement study.' + authors: + - Aaron M Scherer + - Heather Schacht Reisinger + - Michihiko Goto + - Cassie Cunningham Goedken + - Gosia S Clore + - Alexandre R Marra + - Emily E Chasco + - Charlesnika T Evans + - '**Michael A Rubin**' + - Eli N Perencevich + publisher: Infection control and hospital epidemiology + date: '2018-11-15' + link: https://doi.org/10.1017/ice.2018.277 + type: paper + year: 2018 +- id: doi:10.1093/infdis/jiy290 + title: Long-Range Polymerase Chain Reaction Method for Sequencing the Ebola Virus + Genome From Ecological and Clinical Samples. + authors: + - '**Seifert SN**' + - Schulz JE + - Matson MJ + - Bushmaker T + - Marzi A + - Munster VJ + publisher: The Journal of infectious diseases + date: '2018-11-01' + link: https://doi.org/10.1093/infdis/jiy290 + type: paper + year: 2018 +- id: doi:10.12788/jhm.3093 + title: Prevalence of Staphylococcus aureus and Use of Antistaphylococcal Therapy + in Children Hospitalized with Pneumonia. + authors: + - Jennifer M Frush + - Yuwei Zhu + - Kathryn M Edwards + - Carlos G Grijalva + - Isaac P Thomsen + - Wesley H Self + - Seema Jain + - Evan J Anderson + - Krow Ampofo + - '**Andrew T Pavia**' + - Sandra R Arnold + - Jonathan A McCullers + - Derek J Williams + publisher: Journal of hospital medicine + date: '2018-10-30' + link: https://doi.org/10.12788/jhm.3093 + type: paper + year: 2018 +- id: doi:10.1128/aac.00462-18 + title: Attributable Cost and Length of Stay Associated with Nosocomial Gram-Negative + Bacterial Cultures. + authors: + - Nelson RE + - Stevens VW + - '**Jones M**' + - '**Khader K**' + - Schweizer ML + - Perencevich EN + - '**Rubin MA**' + - '**Samore MH**' + publisher: Antimicrobial agents and chemotherapy + date: '2018-10-24' + link: https://doi.org/10.1128/aac.00462-18 + type: paper + year: 2018 +- id: doi:10.1542/peds.2018-0345 + title: Shortened IV Antibiotic Course for Uncomplicated, Late-Onset Group B Streptococcal + Bacteremia. + authors: + - Eric R Coon + - Raj Srivastava + - Greg Stoddard + - Jacob Wilkes + - '**Andrew T Pavia**' + - Samir S Shah + publisher: Pediatrics + date: '2018-10-11' + link: https://doi.org/10.1542/peds.2018-0345 + type: paper + year: 2018 +- id: doi:10.1016/j.jvir.2018.06.015 + title: Diagnostic Accuracy of Noncontrast MR Angiography Protocols at 3T for the + Detection and Characterization of Lower Extremity Peripheral Arterial Disease. + authors: + - Hanrahan CJ + - Lindley MD + - Mueller M + - Kim D + - Sommers D + - Morrell G + - '**Redd A**' + - Carlston K + - Lee VS + publisher: 'Journal of vascular and interventional radiology : JVIR' + date: '2018-10-11' + link: https://doi.org/10.1016/j.jvir.2018.06.015 + type: paper + year: 2018 +- id: doi:10.1016/j.ajic.2018.08.001 + title: Effect of varying federal definitions on prevalence and characteristics associated + with carbapenem-resistant Enterobacteriaceae in veterans with spinal cord injury. + authors: + - Fitzpatrick MA + - Suda KJ + - '**Jones MM**' + - Burns SP + - Poggensee L + - Ramanathan S + - Evans M + - Evans CT + publisher: American journal of infection control + date: '2018-10-06' + link: https://doi.org/10.1016/j.ajic.2018.08.001 + type: paper + year: 2018 +- id: doi:10.14733/cadaps.2019.519-527 + title: Inferring Quality in Point Cloud-based 3D Printed Objects using Topological + Data Analysis + authors: + - '**Paul Rosen**' + - Mustafa Hajij + - Junyi Tu + - Tanvirul Arafin + - Les Piegl + publisher: Computer-Aided Design and Applications + date: '2018-09-29' + link: https://doi.org/10.14733/cadaps.2019.519-527 + type: paper + year: 2018 +- id: doi:10.14733/cadaps.2019.528-538 + title: Handling Anomalies in Object Slicing for 3-D Printing + authors: + - William Oropallo + - Les Piegl + - '**Paul Rosen**' + - Khairan Rajab + publisher: Computer-Aided Design and Applications + date: '2018-09-29' + link: https://doi.org/10.14733/cadaps.2019.528-538 + type: paper + year: 2018 +- id: doi:10.1093/cid/ciy275 + title: Reply to Mercuro et al. + authors: + - Sarah Kabbani + - Adam L Hersh + - Daniel J Shapiro + - Katherine E Fleming-Dutra + - '**Andrew T Pavia**' + - Lauri A Hicks + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2018-09-28' + link: https://doi.org/10.1093/cid/ciy275 + type: paper + year: 2018 +- id: doi:10.5195/jyd.2018.595 + title: 'Teens as Teachers: Positive Outcomes and Recommendations for Promoting Healthy + Nutrition in Adolescents' + authors: + - '**Elizabeth H. Weybright**' + - AnaMaria Diaz Martinez + - Gary Varrella + - Mary Katherine Deen + - Kevin Wright + publisher: Journal of Youth Development + date: '2018-09-18' + link: https://doi.org/10.5195/jyd.2018.595 + type: paper + year: 2018 +- id: doi:10.1164/rccm.201709-1883oc + title: Short-Term Elevation of Fine Particulate Matter Air Pollution and Acute Lower + Respiratory Infection. + authors: + - Benjamin D Horne + - Elizabeth A Joy + - Michelle G Hofmann + - '**Per H Gesteland**' + - John B Cannon + - Jacob S Lefler + - Denitza P Blagev + - E Kent Korgenski + - Natalie Torosyan + - Grant I Hansen + - David Kartchner + - C Arden Pope + publisher: American journal of respiratory and critical care medicine + date: '2018-09-15' + link: https://doi.org/10.1164/rccm.201709-1883oc + type: paper + year: 2018 +- id: doi:10.1109/tvcg.2018.2865149 + title: 'Juniper: A Tree+ Table Approach to Multivariate Graph Visualization.' + authors: + - Nobre C + - Streit M + - '**Lex A**' + publisher: IEEE transactions on visualization and computer graphics + date: '2018-09-03' + link: https://doi.org/10.1109/tvcg.2018.2865149 + type: paper + year: 2018 +- id: doi:10.1093/jac/dky207 + title: 'Specifying an implementation framework for Veterans Affairs antimicrobial + stewardship programmes: using a factor analysis approach.' + authors: + - Chou AF + - Graber CJ + - Zhang Y + - '**Jones M**' + - Goetz MB + - Madaras-Kelly K + - Samore M + - Glassman PA + publisher: The Journal of antimicrobial chemotherapy + date: '2018-09-01' + link: https://doi.org/10.1093/jac/dky207 + type: paper + year: 2018 +- id: doi:10.1007/s11606-018-4479-6 + title: Chronic Multisymptom Illness Among Iraq/Afghanistan-Deployed US Veterans + and Their Healthcare Utilization Within the Veterans Health Administration. + authors: + - April F Mohanty + - Lisa M McAndrew + - Drew Helmer + - '**Matthew H Samore**' + - Adi V Gundlapalli + publisher: Journal of general internal medicine + date: '2018-09-01' + link: https://doi.org/10.1007/s11606-018-4479-6 + type: paper + year: 2018 +- id: doi:10.1056/nejmp1807691 + title: Outbreaks in a Rapidly Changing Central Africa - Lessons from Ebola. + authors: + - Munster VJ + - Bausch DG + - de Wit E + - Fischer R + - Kobinger G + - Muñoz-Fontela C + - Olson SH + - '**Seifert SN**' + - Sprecher A + - Ntoumi F + - Massaquoi M + - Mombouli JV + publisher: The New England journal of medicine + date: '2018-08-22' + link: https://doi.org/10.1056/nejmp1807691 + type: paper + year: 2018 +- id: doi:10.1093/cid/ciy140 + title: Is Parotitis One More Complication of Influenza? The Ongoing Challenge of + Determining Causal Associations. + authors: + - '**Andrew T Pavia**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2018-08-01' + link: https://doi.org/10.1093/cid/ciy140 + type: paper + year: 2018 +- id: doi:10.1093/cid/ciy155 + title: 'Impact of Implementing Antibiotic Stewardship Programs in 15 Small Hospitals: + A Cluster-Randomized Intervention.' + authors: + - Edward Stenehjem + - Adam L Hersh + - Whitney R Buckel + - Peter Jones + - Xiaoming Sheng + - R Scott Evans + - John P Burke + - Bert K Lopansri + - Rajendu Srivastava + - Tom Greene + - '**Andrew T Pavia**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2018-08-01' + link: https://doi.org/10.1093/cid/ciy155 + type: paper + year: 2018 +- id: doi:10.1001/jamainternmed.2018.1898 + title: 'Identification and Characterization of Failures in Infectious Agent Transmission + Precaution Practices in Hospitals: A Qualitative Study.' + authors: + - Sarah L Krein + - '**Jeanmarie Mayer**' + - Molly Harrod + - Lauren E Weston + - Lynn Gregory + - Laura Petersen + - '**Matthew H Samore**' + - Frank A Drews + publisher: JAMA internal medicine + date: '2018-08-01' + link: https://doi.org/10.1001/jamainternmed.2018.1898 + type: paper + year: 2018 +- id: doi:10.1016/j.celrep.2018.07.045 + title: Adaptive Evolution of MERS-CoV to Species Variation in DPP4. + authors: + - Letko M + - Miazgowicz K + - McMinn R + - '**Seifert SN**' + - Sola I + - Enjuanes L + - Carmody A + - van Doremalen N + - Munster V + publisher: Cell reports + date: '2018-08-01' + link: https://doi.org/10.1016/j.celrep.2018.07.045 + type: paper + year: 2018 +- id: doi:10.1371/journal.pone.0199388 + title: 'Transmission of rhinovirus in the Utah BIG-LoVE families: Consequences of + age and household structure.' + authors: + - Frederick R Adler + - Chris Stockmann + - Krow Ampofo + - '**Andrew T Pavia**' + - Carrie L Byington + publisher: PloS one + date: '2018-07-25' + link: https://doi.org/10.1371/journal.pone.0199388 + type: paper + year: 2018 +- id: doi:10.1001/jama.2018.6986 + title: Contact Precautions to Prevent Pathogen Transmission-Reply. + authors: + - '**Michael A Rubin**' + - '**Matthew H Samore**' + - Anthony D Harris + publisher: JAMA + date: '2018-07-24' + link: https://doi.org/10.1001/jama.2018.6986 + type: paper + year: 2018 +- id: doi:10.2196/publichealth.9876 + title: 'Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic + Infectious Disease Epidemiology.' + authors: + - Meyers L + - Ginocchio CC + - Faucett AN + - Nolte FS + - '**Gesteland PH**' + - Leber A + - Janowiak D + - Donovan V + - Dien Bard J + - Spitzer S + - Stellrecht KA + - Salimnia H + - Selvarangan R + - Juretschko S + - Daly JA + - Wallentine JC + - Lindsey K + - Moore F + - Reed SL + - Aguero-Rosenfeld M + - Fey PD + - Storch GA + - Melnick SJ + - Robinson CC + - Meredith JF + - Cook CV + - Nelson RK + - Jones JD + - Scarpino SV + - Althouse BM + - Ririe KM + - Malin BA + - Poritz MA + publisher: JMIR public health and surveillance + date: '2018-07-06' + link: https://doi.org/10.2196/publichealth.9876 + type: paper + year: 2018 +- id: doi:10.1080/16864360.2017.1419648 + title: A hybrid solution to parallel calculation of augmented join trees of scalar + fields in any dimension + authors: + - '**Paul Rosen**' + - Junyi Tu + - Les A. Piegl + publisher: Computer-Aided Design and Applications + date: '2018-07-04' + link: https://doi.org/10.1080/16864360.2017.1419648 + type: paper + year: 2018 +- id: doi:10.1097/mlr.0000000000000916 + title: In Data We Trust? Comparison of Electronic Versus Manual Abstraction of Antimicrobial + Prescribing Quality Metrics for Hospitalized Veterans With Pneumonia. + authors: + - Jones BE + - Haroldsen C + - Madaras-Kelly K + - Goetz MB + - Ying J + - Sauer B + - '**Jones MM**' + - Leecaster M + - Greene T + - Fridkin SK + - Neuhauser MM + - '**Samore MH**' + publisher: Medical care + date: '2018-07-01' + link: https://doi.org/10.1097/mlr.0000000000000916 + type: paper + year: 2018 +- id: doi:10.1093/infdis/jix641 + title: Etiology and Impact of Coinfections in Children Hospitalized With Community-Acquired + Pneumonia. + authors: + - Vikki G Nolan + - Sandra R Arnold + - Anna M Bramley + - Krow Ampofo + - Derek J Williams + - Carlos G Grijalva + - Wesley H Self + - Evan J Anderson + - Richard G Wunderink + - Kathryn M Edwards + - '**Andrew T Pavia**' + - Seema Jain + - Jonathan A McCullers + publisher: The Journal of infectious diseases + date: '2018-06-20' + link: https://doi.org/10.1093/infdis/jix641 + type: paper + year: 2018 +- id: doi:10.1093/cid/ciy035 + title: Opportunities to Improve Fluoroquinolone Prescribing in the United States + for Adult Ambulatory Care Visits. + authors: + - Sarah Kabbani + - Adam L Hersh + - Daniel J Shapiro + - Katherine E Fleming-Dutra + - '**Andrew T Pavia**' + - Lauri A Hicks + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2018-06-18' + link: https://doi.org/10.1093/cid/ciy035 + type: paper + year: 2018 +- id: doi:10.1371/journal.pone.0197976 + title: Epidemiology of nontuberculous mycobacterial infections in the U.S. Veterans + Health Administration. + authors: + - '**Jones MM**' + - Winthrop KL + - Nelson SD + - Duvall SL + - Patterson OV + - Nechodom KE + - Findley KE + - Radonovich LJ Jr + - '**Samore MH**' + - Fennelly KP + publisher: PloS one + date: '2018-06-13' + link: https://doi.org/10.1371/journal.pone.0197976 + type: paper + year: 2018 +- id: doi:10.1017/ice.2018.106 + title: Transmission of Clostridium difficile from asymptomatically colonized or + infected long-term care facility residents. + authors: + - Curtis J Donskey + - Venkata C K Sunkesula + - Nimalie D Stone + - Carolyn V Gould + - L Clifford McDonald + - Matthew Samore + - '**JeanMarie Mayer**' + - Susan M Pacheco + - Annette L Jencson + - Susan P Sambol + - Laurica A Petrella + - Christopher A Gulvik + - Dale N Gerding + publisher: Infection control and hospital epidemiology + date: '2018-05-30' + link: https://doi.org/10.1017/ice.2018.106 + type: paper + year: 2018 +- id: doi:10.1016/j.ajic.2018.03.023 + title: State-level adoption of national guidelines for norovirus outbreaks in health + care settings. + authors: + - Carl J Grafe + - Catherine J Staes + - Kensaku Kawamoto + - '**Matthew H Samore**' + - R Scott Evans + publisher: American journal of infection control + date: '2018-05-30' + link: https://doi.org/10.1016/j.ajic.2018.03.023 + type: paper + year: 2018 +- id: doi:10.1093/jpids/piy002 + title: Outpatient Parenteral Antimicrobial Therapy in Young Infants. + authors: + - Nathan M Krah + - Jared Olson + - Emily A Thorell + - Lawanda Esquibel + - Russell J Osguthorpe + - '**Andrew T Pavia**' + - Adam L Hersh + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2018-05-15' + link: https://doi.org/10.1093/jpids/piy002 + type: paper + year: 2018 +- id: doi:10.1093/jpids/pix038 + title: Impact of Antimicrobial Stewardship for Pediatric Outpatient Parenteral Antibiotic + Therapy. + authors: + - Adam L Hersh + - Jared Olson + - Chris Stockmann + - Emily A Thorell + - Elizabeth D Knackstedt + - Lawanda Esquibel + - Susan Sanderson + - '**Andrew T Pavia**' + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2018-05-15' + link: https://doi.org/10.1093/jpids/pix038 + type: paper + year: 2018 +- id: doi:10.1016/j.jval.2018.04.092 + title: 'Efficacy and Safety of Enzalutamide in Metastatic Prostate Cancer Patients: + A Systematic Review and Meta-Analysis' + authors: + - '**M Rashid**' + - K Shamshavali + - M Vsn + - RK Hyderboini + - R Thode + - S Namare + - V Belekar + - M Chakrawarthy + - A Dang + publisher: Value in Health + date: '2018-05-01' + link: http://dx.doi.org/10.1016/j.jval.2018.04.092 + type: paper + year: 2018 +- id: doi:10.1186/s13756-018-0346-9 + title: A systematic review of the epidemiology of carbapenem-resistant Enterobacteriaceae + in the United States. + authors: + - Daniel J Livorsi + - Margaret L Chorazy + - Marin L Schweizer + - Erin C Balkenende + - Amy E Blevins + - Rajeshwari Nair + - '**Matthew H Samore**' + - Richard E Nelson + - '**Karim Khader**' + - Eli N Perencevich + publisher: Antimicrobial resistance and infection control + date: '2018-04-24' + link: https://doi.org/10.1186/s13756-018-0346-9 + type: paper + year: 2018 +- id: doi:10.1093/ofid/ofy061 + title: Use of Multiple Imputation to Estimate the Proportion of Respiratory Virus + Detections Among Patients Hospitalized With Community-Acquired Pneumonia. + authors: + - Catherine H Bozio + - W Dana Flanders + - Lyn Finelli + - Anna M Bramley + - Carrie Reed + - Neel R Gandhi + - Jorge E Vidal + - Dean Erdman + - Min Z Levine + - Stephen Lindstrom + - Krow Ampofo + - Sandra R Arnold + - Wesley H Self + - Derek J Williams + - Carlos G Grijalva + - Evan J Anderson + - Jonathan A McCullers + - Kathryn M Edwards + - '**Andrew T Pavia**' + - Richard G Wunderink + - Seema Jain + publisher: Open forum infectious diseases + date: '2018-03-16' + link: https://doi.org/10.1093/ofid/ofy061 + type: paper + year: 2018 +- id: doi:10.1001/jama.2017.21122 + title: The Importance of Contact Precautions for Endemic Methicillin-Resistant Staphylococcus + aureus and Vancomycin-Resistant Enterococci. + authors: + - '**Michael A Rubin**' + - '**Matthew H Samore**' + - Anthony D Harris + publisher: JAMA + date: '2018-03-06' + link: https://doi.org/10.1001/jama.2017.21122 + type: paper + year: 2018 +- id: doi:10.1109/tvcg.2018.2811488 + title: 'Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs.' + authors: + - Nobre C + - Gehlenborg N + - Coon H + - '**Lex A**' + publisher: IEEE transactions on visualization and computer graphics + date: '2018-03-06' + link: https://doi.org/10.1109/tvcg.2018.2811488 + type: paper + year: 2018 +- id: doi:10.1136/bmjopen-2017-019494 + title: Do non-inferiority trials of reduced intensity therapies show reduced effects? + A descriptive analysis. + authors: + - Scott K Aberegg + - Andrew M Hersh + - '**Matthew H Samore**' + publisher: BMJ open + date: '2018-03-02' + link: https://doi.org/10.1136/bmjopen-2017-019494 + type: paper + year: 2018 +- id: doi:10.1093/imammb/dqx010 + title: 'Extended models for nosocomial infection: parameter estimation and model + selection.' + authors: + - Thomas A + - '**Khader K**' + - '**Redd A**' + - Leecaster M + - Zhang Y + - '**Jones M**' + - Greene T + - Samore M + publisher: 'Mathematical medicine and biology : a journal of the IMA' + date: '2018-03-01' + link: https://doi.org/10.1093/imammb/dqx010 + type: paper + year: 2018 +- id: doi:10.1073/pnas.1714457115 + title: Prospective forecasts of annual dengue hemorrhagic fever incidence in Thailand, + 2010-2014. + authors: + - Lauer SA + - Sakrejda K + - Ray EL + - '**Keegan LT**' + - Bi Q + - Suangtho P + - Hinjoy S + - Iamsirithaworn S + - Suthachana S + - Laosiritaworn Y + - Cummings DAT + - Lessler J + - Reich NG + publisher: Proceedings of the National Academy of Sciences of the United States + of America + date: '2018-02-20' + link: https://doi.org/10.1073/pnas.1714457115 + type: paper + year: 2018 +- id: doi:10.1093/jpids/piw091 + title: Procalcitonin Accurately Identifies Hospitalized Children With Low Risk of + Bacterial Community-Acquired Pneumonia. + authors: + - Chris Stockmann + - Krow Ampofo + - Jarrett Killpack + - Derek J Williams + - Kathryn M Edwards + - Carlos G Grijalva + - Sandra R Arnold + - Jonathan A McCullers + - Evan J Anderson + - Richard G Wunderink + - Wesley H Self + - Anna Bramley + - Seema Jain + - '**Andrew T Pavia**' + - Anne J Blaschke + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2018-02-19' + link: https://doi.org/10.1093/jpids/piw091 + type: paper + year: 2018 +- id: doi:10.1017/ice.2017.299 + title: Research Agenda for Antimicrobial Stewardship in the Veterans Health Administration + authors: + - Suda KJ + - Livorsi DJ + - Goto M + - Forrest GN + - '**Jones MM**' + - Neuhauser MM + - Hoff BM + - Ince D + - Carrel M + - Nair R + - Knobloch MJ + - Goetz MB + publisher: INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY + date: '2018-02-01' + link: https://doi.org/10.1017/ice.2017.299 + type: paper + year: 2018 +- id: doi:10.1017/ice.2017.309 + title: Establishing a Research Agenda for Preventing Transmission of Multidrug-Resistant + Organisms in Acute-Care Settings in the Veterans Health Administration. + authors: + - Eli N Perencevich + - Anthony D Harris + - Christopher D Pfeiffer + - '**Michael A Rubin**' + - Jennifer N Hill + - Gio J Baracco + - Martin E Evans + - J Stacey Klutts + - Judy A Streit + - Richard E Nelson + - Karim Khader + - Heather Schacht Reisinger + publisher: Infection control and hospital epidemiology + date: '2018-02-01' + link: https://doi.org/10.1017/ice.2017.309 + type: paper + year: 2018 +- id: doi:10.5530/ijopp.10.4.61 + title: 'Gingival Overgrowth on Chronic use of Amlodipine: A Case Report' + authors: + - '**Muhammed Rashid Parambil Peedikkal**' + - Juny Sebastian + - Madhan Ramesh + - Narayanappa Doddaiah + - Sathya Narayana Prashanth + publisher: Indian Journal of Pharmacy Practice + date: '2018-01-30' + link: http://dx.doi.org/10.5530/ijopp.10.4.61 + type: paper + year: 2018 +- id: doi:10.3389/fmicb.2018.00054 + title: A Quasi-Steady-State Approximation to the Basic Target-Cell-Limited Viral + Dynamics Model with a Non-Cytopathic Effect. + authors: + - Cangelosi RA + - '**Schwartz EJ**' + - Wollkind DJ + publisher: Frontiers in microbiology + date: '2018-01-30' + link: https://doi.org/10.3389/fmicb.2018.00054 + type: paper + year: 2018 +- id: doi:10.1186/s13012-018-0709-x + title: Protocol to disseminate a hospital-site controlled intervention using audit + and feedback to implement guidelines concerning inappropriate treatment of asymptomatic + bacteriuria + authors: + - Trautner BW + - Prasad P + - Grigoryan L + - Hysong SJ + - Kramer JR + - Rajan S + - Petersen NJ + - Rosen T + - Drekonja DM + - Graber C + - Patel P + - Lichtenberger P + - Gauthier TP + - Wiseman S + - '**Jones M**' + - Sales A + - Krein S + - Naik AD + - Less is More Study Group + publisher: IMPLEMENTATION SCIENCE + date: '2018-01-19' + link: https://doi.org/10.1186/s13012-018-0709-x + type: paper + year: 2018 +- id: doi:10.1542/peds.2017-2384 + title: Rhinovirus in Febrile Infants and Risk of Bacterial Infection. + authors: + - Anne J Blaschke + - E Kent Korgenski + - Jacob Wilkes + - Angela P Presson + - Emily A Thorell + - '**Andrew T Pavia**' + - Elizabeth D Knackstedt + - Carolyn Reynolds + - Jeff E Schunk + - Judy A Daly + - Carrie L Byington + publisher: Pediatrics + date: '2018-01-17' + link: https://doi.org/10.1542/peds.2017-2384 + type: paper + year: 2018 +- id: doi:10.5530/jyp.2019.11.24 + title: 'Ataxia, Manifestation of Phenytoin Toxicity: A Case Report' + authors: + - Singh Juhi + - Tyagi Shubham Singh + - Jangra Manjeet Singh + - '**Rashid Muhammed**' + - Chhabra Manik + - Tripathi Raman Kumar + publisher: Journal of Young Pharmacist + date: '2018-01-17' + link: http://dx.doi.org/10.5530/jyp.2019.11.24 + type: paper + year: 2018 +- id: doi:10.2196/medinform.9150 + title: 'Automating Quality Measures for Heart Failure Using Natural Language Processing: + A Descriptive Study in the Department of Veterans Affairs.' + authors: + - Garvin JH + - Kim Y + - Gobbel GT + - Matheny ME + - '**Redd A**' + - Bray BE + - Heidenreich P + - Bolton D + - Heavirland J + - Kelly N + - Reeves R + - Kalsy M + - Goldstein MK + - Meystre SM + publisher: JMIR medical informatics + date: '2018-01-15' + link: https://doi.org/10.2196/medinform.9150 + type: paper + year: 2018 +- id: doi:10.1080/16864360.2017.1353732 + title: Point cloud slicing for 3-D printing + authors: + - William Oropallo + - Les A. Piegl + - '**Paul Rosen**' + - Khairan Rajab + publisher: Computer-Aided Design and Applications + date: '2018-01-02' + link: https://doi.org/10.1080/16864360.2017.1353732 + type: paper + year: 2018 +- id: doi:10.7860/jcdr/2018/36694.11708 + title: 'Impact of chronic kidney disease on health-related quality of life: A prospective + observational study using the KDQ o L-36 instrument' + authors: + - Trung Quang Vo + - Thai Quang Tran + - '**Khanh Ngoc Cong Duong**' + - Khang Chi Pham + publisher: Journal of Clinical and Diagnostic Research + date: '2018-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85050135986&partnerID=MN8TOARS + type: paper + year: 2018 +- id: doi:10.7860/jcdr/2018/36954.11709 + title: An assessment of an adapted version of the arthritis impact measurement scales + short-form questionnaire to determine health-related quality of life in Vietnamese + patients with arthritis + authors: + - Trung Quang Vo + - '**Khanh Ngoc Cong Duong**' + - Oanh Thi Ngoc Vu + - An Thanh Pham + - Nam Xuan Vo + publisher: Journal of Clinical and Diagnostic Research + date: '2018-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85050083016&partnerID=MN8TOARS + type: paper + year: 2018 +- id: doi:10.1002/pbc.26927 + title: Identifying patient- and family-centered outcomes relevant to inpatient versus + at-home management of neutropenia in children with acute myeloid leukemia. + authors: + - '**Julia E Szymczak**' + - Kelly D Getz + - Rachel Madding + - Brian Fisher + - Elizabeth Raetz + - Nobuko Hijiya + - Maria M Gramatges + - Meret Henry + - Amir Mian + - Staci D Arnold + - Catherine Aftandilian + - Anderson B Collier + - Richard Aplenc + publisher: Pediatric blood & cancer + date: '2017-12-29' + link: https://doi.org/10.1002/pbc.26927 + type: paper + year: 2017 +- id: doi:10.1007/s40121-017-0181-y + title: Geographic Variability in Diagnosis and Antibiotic Prescribing for Acute + Respiratory Tract Infections. + authors: + - Adam L Hersh + - Daniel J Shapiro + - '**Andrew T Pavia**' + - Katherine E Fleming-Dutra + - Lauri A Hicks + publisher: Infectious diseases and therapy + date: '2017-12-22' + link: https://doi.org/10.1007/s40121-017-0181-y + type: paper + year: 2017 +- id: doi:10.1177/2167696817741030 + title: Exploring Alcohol Use Motivations in Underage College Students + authors: + - Brittany Rhoades Cooper + - '**Elizabeth H. Weybright**' + - Matthew F. Bumpus + - Laura G. Hill + - Jon Agley + publisher: Emerging Adulthood + date: '2017-12-04' + link: https://doi.org/10.1177/2167696817741030 + type: paper + year: 2017 +- id: doi:10.1093/infdis/jix437 + title: 'Quantifying Zika: Advancing the Epidemiology of Zika With Quantitative Models.' + authors: + - '**Keegan LT**' + - Lessler J + - Johansson MA + publisher: The Journal of infectious diseases + date: '2017-12-01' + link: https://doi.org/10.1093/infdis/jix437 + type: paper + year: 2017 +- id: doi:10.1001/jamapediatrics.2017.3225 + title: Effectiveness of β-Lactam Monotherapy vs Macrolide Combination Therapy for + Children Hospitalized With Pneumonia. + authors: + - Derek J Williams + - Kathryn M Edwards + - Wesley H Self + - Yuwei Zhu + - Sandra R Arnold + - Jonathan A McCullers + - Krow Ampofo + - '**Andrew T Pavia**' + - Evan J Anderson + - Lauri A Hicks + - Anna M Bramley + - Seema Jain + - Carlos G Grijalva + publisher: JAMA pediatrics + date: '2017-12-01' + link: https://doi.org/10.1001/jamapediatrics.2017.3225 + type: paper + year: 2017 +- id: doi:10.1093/infdis/jix455 + title: Rhinovirus Viremia in Patients Hospitalized With Community-Acquired Pneumonia. + authors: + - Xiaoyan Lu + - Eileen Schneider + - Seema Jain + - Anna M Bramley + - Weston Hymas + - Chris Stockmann + - Krow Ampofo + - Sandra R Arnold + - Derek J Williams + - Wesley H Self + - Anami Patel + - James D Chappell + - Carlos G Grijalva + - Evan J Anderson + - Richard G Wunderink + - Jonathan A McCullers + - Kathryn M Edwards + - '**Andrew T Pavia**' + - Dean D Erdman + publisher: The Journal of infectious diseases + date: '2017-11-27' + link: https://doi.org/10.1093/infdis/jix455 + type: paper + year: 2017 +- id: doi:10.1017/ice.2017.238 + title: Prevalence and Factors Associated With Multidrug-Resistant Gram-Negative + Organisms in Patients With Spinal Cord Injury + authors: + - Evans CT + - Fitzpatrick MA + - '**Jones MM**' + - Burns SP + - Poggensee L + - Ramanathan S + - LaVela SL + - Safdar N + - Suda KJ + publisher: INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY + date: '2017-11-21' + link: https://doi.org/10.1017/ice.2017.238 + type: paper + year: 2017 +- id: doi:10.1080/16864360.2017.1397893 + title: Ten challenges in CAD cyber education + authors: + - Zachariah J. Beasley + - Les A. Piegl + - '**Paul Rosen**' + publisher: Computer-Aided Design and Applications + date: '2017-11-16' + link: https://doi.org/10.1080/16864360.2017.1397893 + type: paper + year: 2017 +- id: doi:10.3201/eid2311.161214 + title: Antimicrobial Nonsusceptibility of Gram-Negative Bloodstream Isolates, Veterans + Health Administration System, United States, 2003-2013 1 . + authors: + - Goto M + - McDanel JS + - '**Jones MM**' + - Livorsi DJ + - Ohl ME + - Beck BF + - Richardson KK + - Alexander B + - Perencevich EN + publisher: Emerging infectious diseases + date: '2017-11-01' + link: https://doi.org/10.3201/eid2311.161214 + type: paper + year: 2017 +- id: doi:10.1016/j.virol.2017.09.023 + title: Dynamics of lentiviral infection in vivo in the absence of adaptive immune + responses. + authors: + - '**Schwartz EJ**' + - Vaidya NK + - Dorman KS + - Carpenter S + - Mealey RH + publisher: Virology + date: '2017-10-19' + link: https://doi.org/10.1016/j.virol.2017.09.023 + type: paper + year: 2017 +- id: doi:10.2196/preprints.9150 + title: 'Automating Quality Measures for Heart Failure Using Natural Language Processing: + A Descriptive Study in the Department of Veterans Affairs (Preprint)' + authors: + - Jennifer Hornung Garvin + - Youngjun Kim + - Glenn Temple Gobbel + - Michael E Matheny + - '**Andrew Redd**' + - Bruce E Bray + - Paul Heidenreich + - Dan Bolton + - Julia Heavirland + - Natalie Kelly + - Ruth Reeves + - Megha Kalsy + - Mary Kane Goldstein + - Stephane M Meystre + publisher: Preprint + date: '2017-10-09' + link: https://doi.org/10.2196/preprints.9150 + type: preprint + year: 2017 +- id: doi:10.1093/cid/cix532 + title: 'The Drivers of Acute and Long-term Care Clostridium difficile Infection + Rates: A Retrospective Multilevel Cohort Study of 251 Facilities.' + authors: + - Brown KA + - Daneman N + - '**Jones M**' + - Nechodom K + - Stevens V + - Adler FR + - Goetz MB + - '**Mayer J**' + - Samore M + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2017-10-01' + link: https://doi.org/10.1093/cid/cix532 + type: paper + year: 2017 +- id: doi:10.1016/j.amepre.2017.04.004 + title: Authors' Response to "Veterans and the National Tragedy of Suicide". + authors: + - Emily Brignone + - Jamison D Fargo + - Rebecca K Blais + - Marjorie E Carter + - '**Matthew H Samore**' + - Adi V Gundlapalli + publisher: American journal of preventive medicine + date: '2017-10-01' + link: https://doi.org/10.1016/j.amepre.2017.04.004 + type: paper + year: 2017 +- id: doi:10.1016/j.ajic.2017.02.035 + title: 'Dynamic transmission models for economic analysis applied to health care-associated + infections: A review of the literature.' + authors: + - Richard E Nelson + - Rishi Deka + - '**Karim Khader**' + - Vanessa W Stevens + - Marin L Schweizer + - '**Michael A Rubin**' + publisher: American journal of infection control + date: '2017-09-25' + link: https://doi.org/10.1016/j.ajic.2017.02.035 + type: paper + year: 2017 +- id: doi:10.1080/16864360.2017.1287754 + title: Using data indexing for remote visualization of point cloud data + authors: + - '**Paul Rosen**' + - Les A. Piegl + publisher: Computer-Aided Design and Applications + date: '2017-09-19' + link: https://doi.org/10.1080/16864360.2017.1287754 + type: paper + year: 2017 +- id: doi:10.1093/cid/cix432 + title: Identifying Gaps in Respiratory Syncytial Virus Disease Epidemiology in the + United States Prior to the Introduction of Vaccines. + authors: + - Lindsay Kim + - Brian Rha + - Jon S Abramson + - Larry J Anderson + - Carrie L Byington + - Grace L Chen + - John DeVincenzo + - Kathryn M Edwards + - Janet A Englund + - Ann R Falsey + - Marie R Griffin + - Ruth A Karron + - Karen G Martin + - H Cody Meissner + - Flor M Munoz + - '**Andrew T Pavia**' + - Pedro A Piedra + - William Schaffner + - Eric A F Simões + - Rosalyn Singleton + - H Keipp Talbot + - Edward E Walsh + - Jane R Zucker + - Susan I Gerber + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2017-09-15' + link: https://doi.org/10.1093/cid/cix432 + type: paper + year: 2017 +- id: doi:10.1093/infdis/jix352 + title: Human Bocavirus Capsid Messenger RNA Detection in Children With Pneumonia. + authors: + - Robert Schlaberg + - Krow Ampofo + - Keith D Tardif + - Chris Stockmann + - Keith E Simmon + - Weston Hymas + - Steven Flygare + - Brett Kennedy + - Anne Blaschke + - Karen Eilbeck + - Mark Yandell + - Jon A McCullers + - Derek J Williams + - Kathryn Edwards + - Sandra R Arnold + - Anna Bramley + - Seema Jain + - '**Andrew T Pavia**' + publisher: The Journal of infectious diseases + date: '2017-09-15' + link: https://doi.org/10.1093/infdis/jix352 + type: paper + year: 2017 +- id: doi:10.1186/s12859-017-1813-7 + title: Interactive visual exploration and refinement of cluster assignments. + authors: + - Kern M + - '**Lex A**' + - Gehlenborg N + - Johnson CR + publisher: BMC bioinformatics + date: '2017-09-12' + link: https://doi.org/10.1186/s12859-017-1813-7 + type: paper + year: 2017 +- id: doi:10.1007/s11606-017-4161-4 + title: Empirical Consequences of Current Recommendations for the Design and Interpretation + of Noninferiority Trials. + authors: + - Scott K Aberegg + - Andrew M Hersh + - '**Matthew H Samore**' + publisher: Journal of general internal medicine + date: '2017-09-05' + link: https://doi.org/10.1007/s11606-017-4161-4 + type: paper + year: 2017 +- id: doi:10.1093/bioinformatics/btx364 + title: 'UpSetR: an R package for the visualization of intersecting sets and their + properties.' + authors: + - Conway JR + - '**Lex A**' + - Gehlenborg N + publisher: Bioinformatics (Oxford, England) + date: '2017-09-01' + link: https://doi.org/10.1093/bioinformatics/btx364 + type: paper + year: 2017 +- id: doi:10.1097/mlr.0000000000000770 + title: Patient-aligned Care Team Engagement to Connect Veterans Experiencing Homelessness + With Appropriate Health Care. + authors: + - Gundlapalli AV + - '**Redd A**' + - Bolton D + - Vanneman ME + - Carter ME + - Johnson E + - Samore MH + - Fargo JD + - O'Toole TP + publisher: Medical care + date: '2017-09-01' + link: https://doi.org/10.1097/mlr.0000000000000770 + type: paper + year: 2017 +- id: doi:10.1093/cid/cix474 + title: Management of Bacteriuria in Veterans Affairs Hospitals. + authors: + - Spivak ES + - Burk M + - Zhang R + - '**Jones MM**' + - Neuhauser MM + - Goetz MB + - Cunningham FE + - Management of Urinary Tract Infections Medication Use Evaluation Group + - Management of Urinary Tract Infections Medication Use Evaluation Group + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2017-09-01' + link: https://doi.org/10.1093/cid/cix474 + type: paper + year: 2017 +- id: doi:10.1097/mlr.0000000000000765 + title: 'Long-acting Reversible Contraception Among Homeless Women Veterans With + Chronic Health Conditions: A Retrospective Cohort Study.' + authors: + - Gawron LM + - '**Redd A**' + - Suo Y + - Pettey W + - Turok DK + - Gundlapalli AV + publisher: Medical care + date: '2017-09-01' + link: https://doi.org/10.1097/mlr.0000000000000765 + type: paper + year: 2017 +- id: doi:10.1097/mlr.0000000000000767 + title: Increased Health Care Utilization and Costs Among Veterans With a Positive + Screen for Military Sexual Trauma. + authors: + - Emily Brignone + - Adi V Gundlapalli + - Rebecca K Blais + - Rachel Kimerling + - Tyson S Barrett + - Richard E Nelson + - Marjorie E Carter + - '**Matthew H Samore**' + - Jamison D Fargo + publisher: Medical care + date: '2017-09-01' + link: https://doi.org/10.1097/mlr.0000000000000767 + type: paper + year: 2017 +- id: doi:10.1093/jpids/piw020 + title: Detection of 23 Gastrointestinal Pathogens Among Children Who Present With + Diarrhea. + authors: + - Chris Stockmann + - '**Andrew T Pavia**' + - Brad Graham + - Mike Vaughn + - Rob Crisp + - Mark A Poritz + - Stephanie Thatcher + - E Kent Korgenski + - Trenda Barney + - Judy Daly + - Margarita Rogatcheva + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2017-09-01' + link: https://doi.org/10.1093/jpids/piw020 + type: paper + year: 2017 +- id: doi:10.1093/cid/cix370 + title: The Potential for Interventions in a Long-term Acute Care Hospital to Reduce + Transmission of Carbapenem-Resistant Enterobacteriaceae in Affiliated Healthcare + Facilities. + authors: + - '**Damon J A Toth**' + - '**Karim Khader**' + - Rachel B Slayton + - Alexander J Kallen + - Adi V Gundlapalli + - Justin J O'Hagan + - Anthony E Fiore + - '**Michael A Rubin**' + - John A Jernigan + - Matthew H Samore + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2017-08-15' + link: https://doi.org/10.1093/cid/cix370 + type: paper + year: 2017 +- id: doi:10.1016/j.jbi.2017.08.003 + title: A Bayesian system to detect and characterize overlapping outbreaks. + authors: + - John M Aronis + - Nicholas E Millett + - Michael M Wagner + - Fuchiang Tsui + - Ye Ye + - Jeffrey P Ferraro + - Peter J Haug + - '**Per H Gesteland**' + - Gregory F Cooper + publisher: Journal of biomedical informatics + date: '2017-08-07' + link: https://doi.org/10.1016/j.jbi.2017.08.003 + type: paper + year: 2017 +- id: doi:10.1186/s12879-017-2632-1 + title: 'Estimating the impact post randomization changes in staff behavior in infection + prevention trials: a mathematical modeling approach.' + authors: + - '**Lofgren ET**' + publisher: BMC infectious diseases + date: '2017-08-03' + link: https://doi.org/10.1186/s12879-017-2632-1 + type: paper + year: 2017 +- id: doi:10.1017/ice.2017.156 + title: 'Incidence of Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia + coli and Klebsiella Infections in the United States: A Systematic Literature Review.' + authors: + - Jennifer McDanel + - Marin Schweizer + - Victoria Crabb + - Richard Nelson + - Matthew Samore + - '**Karim Khader**' + - Amy E Blevins + - Daniel Diekema + - Hsiu-Yin Chiang + - Rajeshwari Nair + - Eli Perencevich + publisher: Infection control and hospital epidemiology + date: '2017-07-30' + link: https://doi.org/10.1017/ice.2017.156 + type: paper + year: 2017 +- id: doi:10.1093/bioinformatics/btx118 + title: 'swga: a primer design toolkit for selective whole genome amplification.' + authors: + - Clarke EL + - Sundararaman SA + - '**Seifert SN**' + - Bushman FD + - Hahn BH + - Brisson D + publisher: Bioinformatics (Oxford, England) + date: '2017-07-01' + link: https://doi.org/10.1093/bioinformatics/btx118 + type: paper + year: 2017 +- id: doi:10.1093/cid/cix287 + title: 'Comparative Effectiveness of Cefazolin Versus Nafcillin or Oxacillin for + Treatment of Methicillin-Susceptible Staphylococcus aureus Infections Complicated + by Bacteremia: A Nationwide Cohort Study' + authors: + - McDanel JS + - Roghmann MC + - Perencevich EN + - Ohl ME + - Goto M + - Livorsi DJ + - '**Jones M**' + - Albertson JP + - Nair R + - O'Shea AMJ + - Schweizer ML + publisher: CLINICAL INFECTIOUS DISEASES + date: '2017-07-01' + link: https://doi.org/10.1093/cid/cix287 + type: paper + year: 2017 +- id: doi:10.1017/ice.2017.98 + title: Variation in Empiric Coverage Versus Detection of Methicillin-Resistant Staphylococcus + aureus and Pseudomonas aeruginosa in Hospitalizations for Community-Onset Pneumonia + Across 128 US Veterans Affairs Medical Centers + authors: + - Barbara E Jones + - Kevin Antoine Brown + - '**Makoto M Jones**' + - Benedikt D Huttner + - Tom Greene + - Brian C Sauer + - Karl Madaras-Kelly + - '**Michael A Rubin**' + - Matthew Bidwell Goetz + - Matthew H Samore + publisher: INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY + date: '2017-06-21' + link: https://doi.org/10.1017/ice.2017.98 + type: paper + year: 2017 +- id: doi:10.1093/infdis/jix241 + title: Relationship Between Body Mass Index and Outcomes Among Hospitalized Patients + With Community-Acquired Pneumonia. + authors: + - Anna M Bramley + - Carrie Reed + - Lyn Finelli + - Wesley H Self + - Krow Ampofo + - Sandra R Arnold + - Derek J Williams + - Carlos G Grijalva + - Evan J Anderson + - Chris Stockmann + - Christopher Trabue + - Sherene Fakhran + - Robert Balk + - Jonathan A McCullers + - '**Andrew T Pavia**' + - Kathryn M Edwards + - Richard G Wunderink + - Seema Jain + - Centers for Disease Control and Prevention Etiology of Pneumonia in the Community + (EPIC) Study Team + publisher: The Journal of infectious diseases + date: '2017-06-15' + link: https://doi.org/10.1093/infdis/jix241 + type: paper + year: 2017 +- id: doi:10.1590/0102-311x00010616 + title: Expected hazards and hospital beds in host cities of the 2014 FIFA World + Cup in Brazil. + authors: + - Elaine Silva Miranda + - '**Kimberley Shoaf**' + - Raulino Sabino da Silva + - Carolina Figueiredo Freitas + - Claudia Garcia Serpa Osorio-de-Castro + publisher: Cadernos de saude publica + date: '2017-06-12' + link: https://doi.org/10.1590/0102-311x00010616 + type: paper + year: 2017 +- id: doi:10.1016/j.jbi.2017.06.008 + title: 'Modeling the mind: How do we design effective decision-support?' + authors: + - Charlene R Weir + - '**Michael A Rubin**' + - Jonathan Nebeker + - Matthew Samore + publisher: Journal of biomedical informatics + date: '2017-06-08' + link: https://doi.org/10.1016/j.jbi.2017.06.008 + type: paper + year: 2017 +- id: doi:10.1111/cgf.13184 + title: 'Graffinity: Visualizing Connectivity in Large Graphs.' authors: - - Geneva Wilson - - Christopher Pfeiffer - - Margaret Fitzpatrick - - Katie Suda - - Brian Bartle - - Michael Rubin - - Eli Perencevich - - Charlesnika Evans - publisher: Infection Control & Hospital Epidemiology - date: '2020-10-01' - link: https://doi.org/hbz8b8 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIZ871 - title: Use of Oral Vancomycin for Clostridioides difficile Infection and the Risk - of Vancomycin-Resistant Enterococci + - Kerzner E + - '**Lex A**' + - Sigulinsky CL + - Umess T + - Jones BW + - Marc RE + - Meyer M + publisher: 'Computer graphics forum : journal of the European Association for Computer + Graphics' + date: '2017-06-01' + link: https://doi.org/10.1111/cgf.13184 + type: paper + year: 2017 +- id: doi:10.1017/ice.2017.83 + title: Attributable Mortality of Healthcare-Associated Infections Due to Multidrug-Resistant + Gram-Negative Bacteria and Methicillin-Resistant Staphylococcus Aureus. authors: - - Vanessa W Stevens - - Karim Khader - - Kelly Echevarria - - Richard E Nelson - - Yue Zhang - - Makoto Jones - - Tristan T Timbrook - - Matthew H Samore - - Michael A Rubin - publisher: Clinical Infectious Diseases - date: '2019-09-03' - link: https://doi.org/gjtwzt - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2020.8 - title: Validation of the SHEA/IDSA severity criteria to predict poor outcomes among - inpatients and outpatients with Clostridioides difficile infection + - Nelson RE + - Slayton RB + - Stevens VW + - '**Jones MM**' + - Khader K + - '**Rubin MA**' + - Jernigan JA + - Samore MH + publisher: Infection control and hospital epidemiology + date: '2017-06-01' + link: https://doi.org/10.1017/ice.2017.83 + type: paper + year: 2017 +- id: doi:10.1093/infdis/jix148 + title: Viral Pathogen Detection by Metagenomics and Pan-Viral Group Polymerase Chain + Reaction in Children With Pneumonia Lacking Identifiable Etiology. authors: - - Vanessa W. Stevens - - Holly E. Shoemaker - - Makoto M. Jones - - Barbara E. Jones - - Richard E. Nelson - - Karim Khader - - Matthew H. Samore - - Michael A. Rubin - publisher: Infection Control & Hospital Epidemiology - date: '2020-01-30' - link: https://doi.org/hbz8b9 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.15585/MMWR.MM6809E2 - title: "Vital Signs: Trends in Staphylococcus aureus Infections in\ - \ Veterans Affairs Medical Centers \u2014 United States, 2005\u20132017" + - Robert Schlaberg + - Krista Queen + - Keith Simmon + - Keith Tardif + - Chris Stockmann + - Steven Flygare + - Brett Kennedy + - Karl Voelkerding + - Anna Bramley + - Jing Zhang + - Karen Eilbeck + - Mark Yandell + - Seema Jain + - '**Andrew T Pavia**' + - Suxiang Tong + - Krow Ampofo + publisher: The Journal of infectious diseases + date: '2017-05-01' + link: https://doi.org/10.1093/infdis/jix148 + type: paper + year: 2017 +- id: doi:10.1097/pcc.0000000000001135 + title: 'Reducing Pediatric Sternal Wound Infections: A Quality Improvement Project.' authors: - - Makoto Jones - - John A. Jernigan - - Martin E. Evans - - Gary A. Roselle - - Kelly M. Hatfield - - Matthew H. Samore - publisher: MMWR. Morbidity and Mortality Weekly Report - date: '2019-03-08' - link: https://doi.org/hbz8cb - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000466771105352 - title: Benefit Versus Harm of Empiric Anti-MRSA Therapy in Hospitalized Patients - with Pneumonia - authors: [] - publisher: AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000466771105352 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.AJIC.2018.08.001 - title: Effect of varying federal definitions on prevalence and characteristics associated - with carbapenem-resistant Enterobacteriaceae in veterans with spinal cord injury - authors: - - Margaret A. Fitzpatrick - - Katie J. Suda - - Makoto M. Jones - - Stephen P. Burns - - Linda Poggensee - - Swetha Ramanathan - - Martin Evans - - Charlesnika T. Evans - publisher: American Journal of Infection Control - date: '2019-02-01' - link: https://doi.org/g73vdf - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2019.16 - title: 'Evaluation of uncomplicated acute respiratory tract infection management - in veterans: A national utilization review' + - Claudia Delgado-Corcoran + - Charlotte S Van Dorn + - Charles Pribble + - Emily A Thorell + - '**Andrew T Pavia**' + - Camille Ward + - Randall Smout + - Susan L Bratton + - Phillip T Burch + publisher: 'Pediatric critical care medicine : a journal of the Society of Critical + Care Medicine and the World Federation of Pediatric Intensive and Critical Care + Societies' + date: '2017-05-01' + link: https://doi.org/10.1097/pcc.0000000000001135 + type: paper + year: 2017 +- id: doi:10.15700/saje.v37n2a1353 + title: 'Predicting secondary school dropout among South African adolescents: A survival + analysis approach.' authors: - - Jefferson G. Bohan - - Karl Madaras-Kelly - - Benjamin Pontefract - - Makoto Jones - - Melinda M. Neuhauser - - Matthew Bidwell Goetz - - Muriel Burk - - Francesca Cunningham - publisher: Infection Control & Hospital Epidemiology - date: '2019-04-01' - link: https://doi.org/hbz8cc - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2019.24 - title: Laboratory practices for identification and reporting of carbapenem-resistant - Enterobacteriaceae in Department of Veterans Affairs facilities + - '**Weybright EH**' + - Caldwell LL + - Xie HJ + - Wegner L + - Smith EA + publisher: South African journal of education + date: '2017-05-01' + link: https://doi.org/10.15700/saje.v37n2a1353 + type: paper + year: 2017 +- id: doi:10.12788/jhm.2730 + title: Association of Inpatient Antimicrobial Utilization Measures with Antimicrobial + Stewardship Activities and Facility Characteristics of Veterans Affairs Medical + Centers. authors: - - Margaret A. Fitzpatrick - - Katie J. Suda - - Swetha Ramanathan - - Marylou Guihan - - Charnetta Brown - - Nasia Safdar - - Martin Evans - - Makoto M. Jones - - Christopher D. Pfeiffer - - J. Stacey Klutts - - Michael Icardi - - Eli Perencevich - - Michael Rubin - - Charlesnika T. Evans - publisher: Infection Control & Hospital Epidemiology - date: '2019-03-04' - link: https://doi.org/hbz8cd - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIY507 - title: Methicillin-resistantStaphylococcus aureusColonization and Pre- and - Post-hospital Discharge Infection Risk + - Graber CJ + - '**Jones MM**' + - Chou AF + - Zhang Y + - Goetz MB + - Madaras-Kelly K + - Samore MH + - Glassman PA + publisher: Journal of hospital medicine + date: '2017-05-01' + link: https://doi.org/10.12788/jhm.2730 + type: paper + year: 2017 +- id: doi:10.1016/s2213-2600(17)30126-1 + title: Reducing diagnostic uncertainty to improve treatment of respiratory infections. + authors: + - '**Andrew T Pavia**' + publisher: The Lancet. Respiratory medicine + date: '2017-04-06' + link: https://doi.org/10.1016/s2213-2600(17)30126-1 + type: paper + year: 2017 +- id: doi:10.1371/journal.pone.0174970 + title: A study of the transferability of influenza case detection systems between + two large healthcare systems. + authors: + - Ye Ye + - Michael M Wagner + - Gregory F Cooper + - Jeffrey P Ferraro + - Howard Su + - '**Per H Gesteland**' + - Peter J Haug + - Nicholas E Millett + - John M Aronis + - Andrew J Nowalk + - Victor M Ruiz + - Arturo López Pineda + - Lingyun Shi + - Rudy Van Bree + - Thomas Ginter + - Fuchiang Tsui + publisher: PloS one + date: '2017-04-05' + link: https://doi.org/10.1371/journal.pone.0174970 + type: paper + year: 2017 +- id: doi:10.1093/cid/cix041 + title: Reply to Buetti et al. + authors: + - Edward Stenehjem + - Adam L Hersh + - '**Andrew T Pavia**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2017-04-01' + link: https://doi.org/10.1093/cid/cix041 + type: paper + year: 2017 +- id: doi:10.1093/jamia/ocw097 + title: Congestive heart failure information extraction framework for automated treatment + performance measures assessment. + authors: + - Meystre SM + - Kim Y + - Gobbel GT + - Matheny ME + - '**Redd A**' + - Bray BE + - Garvin JH + publisher: 'Journal of the American Medical Informatics Association : JAMIA' + date: '2017-04-01' + link: https://doi.org/10.1093/jamia/ocw097 + type: paper + year: 2017 +- id: doi:10.1001/jamainternmed.2016.9045 + title: Comparative Effectiveness of Vancomycin and Metronidazole for the Prevention + of Recurrence and Death in Patients With Clostridium difficile Infection authors: + - Vanessa W Stevens - Richard E Nelson - - Martin E Evans - - Loretta Simbartl - - Makoto Jones + - Elyse M Schwab-Daugherty + - '**Karim Khader**' + - '**Makoto M Jones**' + - Kevin A Brown + - Tom Greene + - Lindsay D Croft + - Melinda Neuhauser + - Peter Glassman + - Matthew Bidwell Goetz - Matthew H Samore - - Stephen M Kralovic - - Gary A Roselle - - Michael A Rubin - publisher: Clinical Infectious Diseases - date: '2018-08-11' - link: https://doi.org/hbz8cf - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1513/ANNALSATS.201902-162OC - title: Potential Impact of Hospital-acquired Pneumonia Guidelines on Empiric Antibiotics. - An Evaluation of 113 Veterans Affairs Medical Centers + - '**Michael A Rubin**' + publisher: JAMA INTERNAL MEDICINE + date: '2017-04-01' + link: https://doi.org/10.1001/jamainternmed.2016.9045 + type: paper + year: 2017 +- id: doi:10.1016/j.dhjo.2017.03.003 + title: Homelessness following disability-related discharges from active duty military + service in Afghanistan and Iraq. authors: - - A. Doran Bostwick - - Barbara E. Jones - - Robert Paine - - Matthew Bidwell Goetz - - Matthew Samore - - Makoto Jones - publisher: Annals of the American Thoracic Society - date: '2019-11-01' - link: https://doi.org/hbz8cg - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.EPIDEM.2019.100347 - title: Variation and trends in transmission dynamics of Methicillin-resistant Staphylococcus - aureus in veterans affairs hospitals and nursing homes + - Fargo JD + - Brignone E + - Metraux S + - Peterson R + - Carter ME + - Barrett T + - Palmer M + - '**Redd A**' + - Samore MH + - Gundlapalli AV + publisher: Disability and health journal + date: '2017-03-10' + link: https://doi.org/10.1016/j.dhjo.2017.03.003 + type: paper + year: 2017 +- id: doi:10.1001/jamapediatrics.2016.3484 + title: Limited and Variable Use of Antivirals for Children Hospitalized With Influenza. authors: - - Karim Khader - - Alun Thomas - - Makoto Jones - - Damon Toth - - Vanessa Stevens - - Matthew H. Samore - publisher: Epidemics - date: '2019-09-01' - link: https://doi.org/gg3v5j - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000466771105353 - title: Where's the Sweet Spot? Exploring the Impact of Varying Antibiogram Thresholds - to Guide Broad-Spectrum Antibiotic Use in Hospital Acquired Pneumonia - authors: [] - publisher: AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000466771105353 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000449978902427 - title: Antibiogram Directed Treatment for Hospital-Acquired Pneumonia Across All - Veterans Affairs Medical Centers - authors: [] - publisher: AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000449978902427 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1128/AAC.00462-18 - title: Attributable Cost and Length of Stay Associated with Nosocomial Gram-Negative - Bacterial Cultures + - Chris Stockmann + - Carrie L Byington + - '**Andrew T Pavia**' + - Krow Ampofo + - Jacob Wilkes + - E Kent Korgenski + - Adam L Hersh + publisher: JAMA pediatrics + date: '2017-03-01' + link: https://doi.org/10.1001/jamapediatrics.2016.3484 + type: paper + year: 2017 +- id: doi:10.1111/birt.12276 + title: 'Utah obstetricians'' opinions of planned home birth and conflicting NICE/ACOG + guidelines: A qualitative study.' authors: - - Richard E. Nelson - - Vanessa W. Stevens - - Makoto Jones - - Karim Khader - - Marin L. Schweizer - - Eli N. Perencevich - - Michael A. Rubin - - Matthew H. Samore - publisher: Antimicrobial Agents and Chemotherapy - date: '2018-11-01' - link: https://doi.org/gfk8mc - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml + - Emily Rainey + - Sara Simonsen + - Joseph Stanford + - '**Kimberley Shoaf**' + - Jami Baayd + publisher: Birth (Berkeley, Calif.) + date: '2017-02-17' + link: https://doi.org/10.1111/birt.12276 + type: paper + year: 2017 - id: doi:10.1080/10790268.2017.1281373 title: Changes in bacterial epidemiology and antibiotic resistance among veterans - with spinal cord injury/disorder over the past 9 years + with spinal cord injury/disorder over the past 9 years. authors: - - Margaret A. Fitzpatrick - - Katie J. Suda - - Nasia Safdar - - Stephen P. Burns - - Makoto M. Jones - - Linda Poggensee - - Swetha Ramanathan - - Charlesnika T. Evans - publisher: The Journal of Spinal Cord Medicine + - Fitzpatrick MA + - Suda KJ + - Safdar N + - Burns SP + - '**Jones MM**' + - Poggensee L + - Ramanathan S + - Evans CT + publisher: The journal of spinal cord medicine date: '2017-02-15' - link: https://doi.org/hbz8ch - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1371/JOURNAL.PONE.0197976 - title: Epidemiology of nontuberculous mycobacterial infections in the U.S. Veterans - Health Administration - authors: - - Makoto M. Jones - - Kevin L. Winthrop - - Scott D. Nelson - - Scott L. Duvall - - Olga V. Patterson - - Kevin E. Nechodom - - Kimberly E. Findley - - Lewis J. Radonovich - - Matthew H. Samore - - Kevin P. Fennelly - publisher: PLOS ONE - date: '2018-06-13' - link: https://doi.org/gdp33w - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/IMAMMB/DQX010 - title: 'Extended models for nosocomial infection: parameter estimation and model - selection' + link: https://doi.org/10.1080/10790268.2017.1281373 + type: paper + year: 2017 +- id: doi:10.1093/ofid/ofx014 + title: Influence of Antibiotics on the Detection of Bacteria by Culture-Based and + Culture-Independent Diagnostic Tests in Patients Hospitalized With Community-Acquired + Pneumonia. + authors: + - Aaron M Harris + - Anna M Bramley + - Seema Jain + - Sandra R Arnold + - Krow Ampofo + - Wesley H Self + - Derek J Williams + - Evan J Anderson + - Carlos G Grijalva + - Jonathan A McCullers + - '**Andrew T Pavia**' + - Richard G Wunderink + - Kathryn M Edwards + - Jonas M Winchell + - Lauri A Hicks + publisher: Open forum infectious diseases + date: '2017-02-10' + link: https://doi.org/10.1093/ofid/ofx014 + type: paper + year: 2017 +- id: doi:10.1093/oid/ofw247 + title: A dynamic transmission model to evaluate the effectiveness of infection control + strategies authors: + - '**Karim Khader**' - Alun Thomas - - Karim Khader - - Andrew Redd + - W Charles Huskins - Molly Leecaster - Yue Zhang - - Makoto Jones - Tom Greene - - Matthew Samore - publisher: 'Mathematical Medicine and Biology: A Journal of the IMA' - date: '2017-10-12' - link: https://doi.org/hbz8cj - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1097/MLR.0000000000000916 - title: In Data We Trust? Comparison of Electronic Versus Manual Abstraction of Antimicrobial - Prescribing Quality Metrics for Hospitalized Veterans With Pneumonia + - '**Andrew Redd**' + - Matthew H Samore + publisher: Open Forum Infectious Diseases + date: '2017-02-10' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85014251309&partnerID=MN8TOARS + type: paper + year: 2017 +- id: doi:10.1016/j.jbi.2017.01.017 + title: Extraction of left ventricular ejection fraction information from various + types of clinical reports. authors: - - Barbara E. Jones - - Candace Haroldsen - - Karl Madaras-Kelly - - Matthew B. Goetz - - Jian Ying - - Brian Sauer - - Makoto M. Jones - - Molly Leecaster - - Tom Greene - - Scott K. Fridkin - - Melinda M. Neuhauser - - Matthew H. Samore - publisher: Medical Care - date: '2018-07-01' - link: https://doi.org/gdrd3w - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000449980300059 - title: Practice Patterns for Hospital-Acquired Pneumonia at All Veterans Affairs - Medical Centers + - Kim Y + - Garvin JH + - Goldstein MK + - Hwang TS + - '**Redd A**' + - Bolton D + - Heidenreich PA + - Meystre SM + publisher: Journal of biomedical informatics + date: '2017-02-02' + link: https://doi.org/10.1016/j.jbi.2017.01.017 + type: paper + year: 2017 +- id: doi:10.1109/tvcg.2017.2661309 + title: 'DSPCP: A Data Scalable Approach for Identifying Relationships in Parallel + Coordinates.' + authors: + - Nguyen H + - '**Rosen P**' + publisher: IEEE transactions on visualization and computer graphics + date: '2017-01-30' + link: https://doi.org/10.1109/tvcg.2017.2661309 + type: paper + year: 2017 +- id: doi:10.1017/ice.2016.328 + title: A Report of the Efforts of the Veterans Health Administration National Antimicrobial + Stewardship Initiative. + authors: + - Kelly AA + - '**Jones MM**' + - Echevarria KL + - Kralovic SM + - Samore MH + - Goetz MB + - Madaras-Kelly KJ + - Simbartl LA + - Morreale AP + - Neuhauser MM + - Roselle GA + publisher: Infection control and hospital epidemiology + date: '2017-01-25' + link: https://doi.org/10.1017/ice.2016.328 + type: paper + year: 2017 +- id: doi:10.18666/jpra-2017-v35-i1-7246 + title: '“It Was Like We Were All Equal”: Maximizing Youth Development Using Youth-Adult + Partnerships' + authors: + - '**Elizabeth H. Weybright**' + - Nathan Trauntvein + - Mary Katherine Deen + publisher: Journal of Park and Recreation Administration + date: '2017-01-01' + link: https://doi.org/10.18666/jpra-2017-v35-i1-7246 + type: paper + year: 2017 +- id: doi:10.3233/978-1-61499-781-8-128 + title: Using structured and unstructured data to refine estimates of military sexual + trauma status among Us Military Veterans + authors: + - Gundlapalli Adi V. + - Brignone Emily + - Divita Guy + - Jones Audrey L. + - '**Redd Andrew**' + - Suo Ying + - Pettey Warren B.P. + - Mohanty April + - Gawron Lori + - Blais Rebecca + - Samore Matthew H. + - Fargo Jamison D. + publisher: Studies in Health Technology and Informatics + date: '2017-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85022226558&partnerID=MN8TOARS + type: paper + year: 2017 +- id: insightnet:afff5f5c7caa8af052f2 + title: 'The "Safety Net" of Community Care: Leveraging GIS to Identify Geographic + Access Barriers to Texas Family Planning Clinics for Homeless Women Veterans' authors: [] - publisher: AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000449980300059 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/S13012-018-0709-X - title: Protocol to disseminate a hospital-site controlled intervention using audit - and feedback to implement guidelines concerning inappropriate treatment of asymptomatic - bacteriuria + publisher: AMIA ... Annual Symposium proceedings. AMIA Symposium + date: '2017-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85058759450&partnerID=MN8TOARS + type: paper + year: 2017 +- id: doi:10.2312/eurova.20171112 + title: How Sensemaking Tools Influence Display Space Usage + authors: [] + publisher: EuroVis Workshop on Visual Analytics (EuroVA) + date: '2017-01-01' + link: https://diglib.eg.org/handle/10.2312/eurova20171112 + type: paper + year: 2017 +- id: pmid:29295115 + title: General Symptom Extraction from VA Electronic Medical Notes. authors: - - Barbara W. Trautner - - Pooja Prasad - - Larissa Grigoryan - - Sylvia J. Hysong - - Jennifer R. Kramer - - Suja Rajan - - Nancy J. Petersen - - Tracey Rosen - - Dimitri M. Drekonja - - Christopher Graber - - Payal Patel - - Paola Lichtenberger - - Timothy P. Gauthier - - Steve Wiseman - - Makoto Jones - - Anne Sales - - Sarah Krein - - Aanand Dinkar Naik - publisher: Implementation Science - date: '2018-01-19' - link: https://doi.org/gcwdb2 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2017.299 - title: Research Agenda for Antimicrobial Stewardship in the Veterans Health Administration + - Guy Divita + - Gang Luo + - Le-Thuy T Tran + - T Elizabeth Workman + - Adi V Gundlapalli + - '**Matthew H Samore**' + publisher: Studies in health technology and informatics + date: '2017-01-01' + link: https://pubmed.ncbi.nlm.nih.gov/29295115/ + type: paper + year: 2017 +- id: doi:10.3233/978-1-61499-781-8-112 + title: Distance to veterans administration medical centers as a barrier to specialty + care for homeless women veterans authors: - - Katie J. Suda - - Daniel J. Livorsi - - Michihiko Goto - - Graeme N. Forrest - - Makoto M. Jones - - Melinda M. Neuhauser - - Brian M. Hoff - - Dilek Ince - - Margaret Carrel + - Gawron Lori M. + - Pettey Warren B.P. + - '**Redd Andrew M.**' + - Suo Ying + - Gundlapalli Adi V. + publisher: Studies in Health Technology and Informatics + date: '2017-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85022231180&partnerID=MN8TOARS + type: paper + year: 2017 +- id: doi:10.3233/978-1-61499-781-8-136 + title: Comparison of grouping methods for template extraction from VA Medical Record + Text + authors: + - '**Redd Andrew M.**' + - Gundlapalli Adi V. + - Divita Guy + - Tran Le-Thuy + - Pettey Warren B.P. + - Samore Matthew H. + publisher: Studies in Health Technology and Informatics + date: '2017-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85022198071&partnerID=MN8TOARS + type: paper + year: 2017 +- id: doi:10.3233/978-1-61499-781-8-24 + title: 'Characteristics of the highest users of emergency services in veterans affairs + hospitals: Homeless and non-homeless' + authors: + - Gundlapalli Adi V. + - Jones Audrey L. + - '**Redd Andrew**' + - Suo Ying + - Pettey Warren B.P. + - Mohanty April + - Brignone Emily + - Gawron Lori + - Vanneman Megan + - Samore Matthew H. + - Fargo Jamison D. + publisher: Studies in Health Technology and Informatics + date: '2017-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85022175417&partnerID=MN8TOARS + type: paper + year: 2017 +- id: doi:10.1128/jcm.01701-16 + title: Serology Enhances Molecular Diagnosis of Respiratory Virus Infections Other + than Influenza in Children and Adults Hospitalized with Community-Acquired Pneumonia. + authors: + - Yange Zhang + - Senthilkumar K Sakthivel + - Anna Bramley + - Seema Jain + - Amber Haynes + - James D Chappell + - Weston Hymas + - Noel Lenny + - Anami Patel + - Chao Qi + - Krow Ampofo + - Sandra R Arnold + - Wesley H Self + - Derek J Williams + - David Hillyard + - Evan J Anderson + - Carlos G Grijalva + - Yuwei Zhu + - Richard G Wunderink + - Kathryn M Edwards + - '**Andrew T Pavia**' + - Jonathan A McCullers + - Dean D Erdman + publisher: Journal of clinical microbiology + date: '2016-12-28' + link: https://doi.org/10.1128/jcm.01701-16 + type: paper + year: 2016 +- id: doi:10.1093/ofid/ofw254 + title: Oseltamivir Use Among Children and Adults Hospitalized With Community-Acquired + Pneumonia. + authors: + - Ikwo K Oboho + - Anna Bramley + - Lyn Finelli + - Alicia Fry + - Krow Ampofo + - Sandra R Arnold + - Wesley H Self + - Derek J Williams + - D Mark Courtney + - Yuwei Zhu + - Evan J Anderson + - Carlos G Grijalva + - Jonathan A McCullers + - Richard G Wunderink + - '**Andrew T Pavia**' + - Kathryn M Edwards + - Seema Jain + publisher: Open forum infectious diseases + date: '2016-12-27' + link: https://doi.org/10.1093/ofid/ofw254 + type: paper + year: 2016 +- id: doi:10.1093/hmg/ddw349 + title: Prostate cancer risk regions at 8q24 and 17q24 are differentially associated + with somatic TMPRSS2:ERG fusion status. + authors: + - Manuel Luedeke + - Antje E Rinckleb + - Liesel M FitzGerald + - Milan S Geybels + - Johanna Schleutker + - Rosalind A Eeles + - Manuel R Teixeira + - Lisa Cannon-Albright + - Elaine A Ostrander + - Steffen Weikert + - Kathleen Herkommer + - Tiina Wahlfors + - Tapio Visakorpi + - Katri A Leinonen + - Teuvo L J Tammela + - Colin S Cooper + - Zsofia Kote-Jarai + - Sandra Edwards + - Chee L Goh + - Frank McCarthy + - Chris Parker + - Penny Flohr + - Paula Paulo + - Carmen Jerónimo + - Rui Henrique + - Hans Krause + - Sven Wach + - Verena Lieb + - Tilman T Rau + - Walther Vogel + - Rainer Kuefer + - Matthias D Hofer + - Sven Perner + - '**Mark A Rubin**' + - Archana M Agarwal + - Doug F Easton + - Ali Amin Al Olama + - Sara Benlloch + - PRACTICAL consortium + - Josef Hoegel + - Janet L Stanford + - Christiane Maier + publisher: Human molecular genetics + date: '2016-12-15' + link: https://doi.org/10.1093/hmg/ddw349 + type: paper + year: 2016 +- id: doi:10.1007/s40121-016-0136-8 + title: A Retrospective Study of the Impact of Rapid Diagnostic Testing on Time to + Pathogen Identification and Antibiotic Use for Children with Positive Blood Cultures. + authors: + - Angela Fimbres Veesenmeyer + - Jared A Olson + - Adam L Hersh + - Chris Stockmann + - Kent Korgenski + - Emily A Thorell + - '**Andrew T Pavia**' + - Anne J Blaschke + publisher: Infectious diseases and therapy + date: '2016-11-10' + link: https://doi.org/10.1007/s40121-016-0136-8 + type: paper + year: 2016 +- id: doi:10.1017/ice.2016.254 + title: 'Incidence and Outcomes Associated With Infections Caused by Vancomycin-Resistant + Enterococci in the United States: Systematic Literature Review and Meta-Analysis.' + authors: + - Hsiu-Yin Chiang + - Eli N Perencevich - Rajeshwari Nair - - Mary Jo Knobloch - - Matthew B. Goetz - publisher: Infection Control & Hospital Epidemiology - date: '2018-02-01' - link: https://doi.org/hbz8ck - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/JAC/DKY207 - title: 'Specifying an implementation framework for Veterans Affairs antimicrobial - stewardship programmes: using a factor analysis approach' + - Richard E Nelson + - Matthew Samore + - '**Karim Khader**' + - Margaret L Chorazy + - Loreen A Herwaldt + - Amy Blevins + - Melissa A Ward + - Marin L Schweizer + publisher: Infection control and hospital epidemiology + date: '2016-11-09' + link: https://doi.org/10.1017/ice.2016.254 + type: paper + year: 2016 +- id: doi:10.7196/samj.2016.v106i11.10814 + title: The state of methamphetamine ('tik') use among youth in the Western Cape, + South Africa. authors: - - Ann F Chou - - Christopher J Graber - - Yue Zhang - - Makoto Jones - - Matthew Bidwell Goetz - - Karl Madaras-Kelly + - '**Weybright EH**' + - Caldwell LL + - Wegner L + - Smith E + - Jacobs JJ + publisher: South African medical journal = Suid-Afrikaanse tydskrif vir geneeskunde + date: '2016-11-02' + link: https://doi.org/10.7196/samj.2016.v106i11.10814 + type: paper + year: 2016 +- id: doi:10.1007/s40588-016-0049-z + title: 'HIV Dynamics With Immune Responses: Perspectives From Mathematical Modeling' + authors: + - '**Elissa J. Schwartz**' + - Karin R. H. Biggs + - Clayton Bailes + - Kari A. Ferolito + - Naveen K. Vaidya + publisher: Current Clinical Microbiology Reports + date: '2016-10-24' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85065168473&partnerID=MN8TOARS + type: paper + year: 2016 +- id: doi:10.1007/s00180-016-0690-2 + title: On the impact of model selection on predictor identification and parameter + inference. + authors: + - Pfeiffer RM + - '**Redd A**' + - Carroll RJ + publisher: Computational statistics + date: '2016-10-22' + link: https://doi.org/10.1007/s00180-016-0690-2 + type: paper + year: 2016 +- id: doi:10.1542/peds.2016-1019 + title: Predicting Severe Pneumonia Outcomes in Children. + authors: + - Derek J Williams + - Yuwei Zhu + - Carlos G Grijalva + - Wesley H Self + - Frank E Harrell + - Carrie Reed + - Chris Stockmann + - Sandra R Arnold + - Krow K Ampofo + - Evan J Anderson + - Anna M Bramley + - Richard G Wunderink + - Jonathan A McCullers + - '**Andrew T Pavia**' + - Seema Jain + - Kathryn M Edwards + publisher: Pediatrics + date: '2016-10-01' + link: https://doi.org/10.1542/peds.2016-1019 + type: paper + year: 2016 +- id: doi:10.1093/cid/ciw588 + title: Antibiotic Use in Small Community Hospitals. + authors: + - Edward Stenehjem + - Adam L Hersh + - Xiaoming Sheng + - Peter Jones + - Whitney R Buckel + - James F Lloyd + - Stephen Howe + - R Scott Evans + - Tom Greene + - '**Andrew T Pavia**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2016-09-30' + link: https://doi.org/10.1093/cid/ciw588 + type: paper + year: 2016 +- id: doi:10.1007/s11538-016-0201-1 + title: 'Harnessing Intra-Host Strain Competition to Limit Antibiotic Resistance: + Mathematical Model Results.' + authors: + - Alexander B Beams + - '**Damon J A Toth**' + - '**Karim Khader**' + - Frederick R Adler + publisher: Bulletin of mathematical biology + date: '2016-09-26' + link: https://doi.org/10.1007/s11538-016-0201-1 + type: paper + year: 2016 +- id: doi:10.1080/16864360.2016.1223443 + title: Generating point clouds for slicing free-form objects for 3-D printing + authors: + - William Oropallo + - Les A. Piegl + - '**Paul Rosen**' + - Khairan Rajab + publisher: Computer-Aided Design and Applications + date: '2016-08-24' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84983261260&partnerID=MN8TOARS + type: paper + year: 2016 +- id: doi:10.1016/j.jbi.2016.07.019 + title: A pilot study of a heuristic algorithm for novel template identification + from VA electronic medical record text. + authors: + - '**Redd AM**' + - Gundlapalli AV + - Divita G + - Carter ME + - Tran LT + - Samore MH + publisher: Journal of biomedical informatics + date: '2016-08-03' + link: https://doi.org/10.1016/j.jbi.2016.07.019 + type: paper + year: 2016 +- id: doi:10.1590/0102-311x00087116 + title: 'Preparedness for the Rio 2016 Olympic Games: hospital treatment capacity + in georeferenced areas.' + authors: + - Carolina Figueiredo Freitas + - Claudia Garcia Serpa Osorio-de-Castro + - '**Kimberley Irene Shoaf**' + - Raulino Sabino da Silva + - Elaine Silva Miranda + publisher: Cadernos de saude publica + date: '2016-08-01' + link: https://doi.org/10.1590/0102-311x00087116 + type: paper + year: 2016 +- id: doi:10.1007/s11121-016-0658-z + title: 'Moving Beyond Drinking to Have a Good Time: a Person-Centered Approach to + Identifying Reason Typologies in Legal-Aged College Student Drinkers.' + authors: + - '**Weybright EH**' + - Cooper BR + - Beckmeyer J + - Bumpus MF + - Hill LG + - Agley J + publisher: 'Prevention science : the official journal of the Society for Prevention + Research' + date: '2016-08-01' + link: https://doi.org/10.1007/s11121-016-0658-z + type: paper + year: 2016 +- id: doi:10.1080/01490400.2016.1194790 + title: 'Perceived Parental Control, Restructuring Ability, and Leisure Motivation: + A Cross-Cultural Comparison.' + authors: + - Xie HJ + - Caldwell LL + - Graham JW + - '**Weybright EH**' + - Wegner L + - Smith EA + publisher: Leisure sciences + date: '2016-07-19' + link: https://doi.org/10.1080/01490400.2016.1194790 + type: paper + year: 2016 +- id: doi:10.1017/ice.2016.145 + title: Costs and Mortality Associated With Multidrug-Resistant Healthcare-Associated + Acinetobacter Infections. + authors: + - Richard E Nelson + - Marin L Schweizer + - Eli N Perencevich + - Scott D Nelson + - '**Karim Khader**' + - Hsiu-Yin Chiang + - Margaret L Chorazy + - Amy Blevins + - Melissa A Ward + - Matthew H Samore + publisher: Infection control and hospital epidemiology + date: '2016-07-13' + link: https://doi.org/10.1017/ice.2016.145 + type: paper + year: 2016 +- id: doi:10.1016/j.jbi.2016.07.012 + title: Detecting the presence of an indwelling urinary catheter and urinary symptoms + in hospitalized patients using natural language processing. + authors: + - Gundlapalli AV + - Divita G + - '**Redd A**' + - Carter ME + - Ko D + - Rubin M + - Samore M + - Strymish J + - Krein S + - Gupta K + - Sales A + - Trautner BW + publisher: Journal of biomedical informatics + date: '2016-07-09' + link: https://doi.org/10.1016/j.jbi.2016.07.012 + type: paper + year: 2016 +- id: doi:10.4338/aci-2015-12-ra-0182 + title: 'Feasibility of Population Health Analytics and Data Visualization for Decision + Support in the Infectious Diseases Domain: A pilot study.' + authors: + - Don Roosan + - Guilherme Del Fiol + - Jorie Butler + - Yarden Livnat + - '**Jeanmarie Mayer**' - Matthew Samore - - Peter A Glassman - publisher: Journal of Antimicrobial Chemotherapy - date: '2018-06-04' - link: https://doi.org/gdnnch - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1111/1475-6773.13063 - title: "The Impact of Healthcare\u2010Associated Methicillin\u2010Resistant Staphylococcus\ - \ aureus Infections on Postdischarge Health Care Costs and Utilization across\ - \ Multiple Health Care Systems" - authors: - - Richard E. Nelson - Makoto Jones - - "Chuan\u2010Fen Liu" - - Matthew H. Samore - - Martin E. Evans - - Vanessa W. Stevens - - Thomas Reese - - Michael A. Rubin - publisher: Health Services Research - date: '2018-10-09' - link: https://doi.org/gfpvpm - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2016.328 - title: A Report of the Efforts of the Veterans Health Administration National Antimicrobial - Stewardship Initiative - authors: - - Allison A. Kelly - - Makoto M. Jones - - Kelly L. Echevarria - - Stephen M. Kralovic - - Matthew H. Samore - - Matthew B. Goetz - - Karl J. Madaras-Kelly - - Loretta A. Simbartl - - Anthony P. Morreale - - Melinda M. Neuhauser - - Gary A. Roselle - publisher: Infection Control & Hospital Epidemiology - date: '2017-01-25' - link: https://doi.org/hbz8cm - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.3201/EID2311.161214 - title: "Antimicrobial Nonsusceptibility of Gram-Negative Bloodstream Isolates, Veterans\ - \ Health Administration System, United States, 2003\u201320131" + - Charlene Weir + publisher: Applied clinical informatics + date: '2016-06-29' + link: https://doi.org/10.4338/aci-2015-12-ra-0182 + type: paper + year: 2016 +- id: doi:10.1093/cid/ciw357 + title: Clinical and Epidemiological Evidence of the Red Queen Hypothesis in Pneumococcal + Serotype Dynamics. authors: - - Michihiko Goto - - Jennifer S. McDanel - - Makoto M. Jones - - Daniel J. Livorsi - - Michael E. Ohl - - Brice F. Beck - - Kelly K. Richardson - - Bruce Alexander - - Eli N. Perencevich - publisher: Emerging Infectious Diseases - date: '2017-11-01' - link: https://doi.org/gcgc4p - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.12788/JHM.2730 - title: Association of Inpatient Antimicrobial Utilization Measures with Antimicrobial - Stewardship Activities and Facility Characteristics of Veterans Affairs Medical - Centers + - Chris Stockmann + - Krow Ampofo + - '**Andrew T Pavia**' + - Anne J Blaschke + - Edward O Mason + - Angela P Presson + - Larry J Forney + - Carrie L Byington + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2016-06-09' + link: https://doi.org/10.1093/cid/ciw357 + type: paper + year: 2016 +- id: doi:10.1111/cgf.12883 + title: 'Pathfinder: Visual Analysis of Paths in Graphs.' authors: - - Christopher J. Graber - - Makoto M. Jones - - Ann F. Chou - - Yue Zhang - - Matthew Bidwell Goetz - - "Karl Madaras\u2010Kelly" - - Matthew H. Samore - - Peter A. Glassman - publisher: Journal of Hospital Medicine - date: '2017-05-01' - link: https://doi.org/f97jdw - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2017.83 - title: Attributable Mortality of Healthcare-Associated Infections Due to Multidrug-Resistant - Gram-Negative Bacteria and Methicillin-Resistant Staphylococcus Aureus + - Partl C + - Gratzl S + - Streit M + - Wassermann AM + - Pfister H + - Schmalstieg D + - '**Lex A**' + publisher: 'Computer graphics forum : journal of the European Association for Computer + Graphics' + date: '2016-06-01' + link: https://doi.org/10.1111/cgf.12883 + type: paper + year: 2016 +- id: doi:10.1186/s13059-016-0969-1 + title: 'Taxonomer: an interactive metagenomics analysis portal for universal pathogen + detection and host mRNA expression profiling.' authors: - - Richard E. Nelson - - Rachel B. Slayton - - Vanessa W. Stevens - - Makoto M. Jones - - Karim Khader - - Michael A. Rubin - - John A. Jernigan - - Matthew H. Samore - publisher: Infection Control & Hospital Epidemiology - date: '2017-06-01' - link: https://doi.org/gbmrqw - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIX287 - title: 'Comparative Effectiveness of Cefazolin Versus Nafcillin or Oxacillin for - Treatment of Methicillin-Susceptible Staphylococcus aureus Infections Complicated - by Bacteremia: A Nationwide Cohort Study' + - Steven Flygare + - Keith Simmon + - Chase Miller + - Yi Qiao + - Brett Kennedy + - Tonya Di Sera + - Erin H Graf + - Keith D Tardif + - Aurélie Kapusta + - Shawn Rynearson + - Chris Stockmann + - Krista Queen + - Suxiang Tong + - Karl V Voelkerding + - Anne Blaschke + - Carrie L Byington + - Seema Jain + - '**Andrew Pavia**' + - Krow Ampofo + - Karen Eilbeck + - Gabor Marth + - Mark Yandell + - Robert Schlaberg + publisher: Genome biology + date: '2016-05-26' + link: https://doi.org/10.1186/s13059-016-0969-1 + type: paper + year: 2016 +- id: doi:10.1016/j.epidem.2016.04.002 + title: Estimates of the risk of large or long-lasting outbreaks of Middle East respiratory + syndrome after importations outside the Arabian Peninsula. authors: - - Jennifer S McDanel - - Mary-Claire Roghmann - - Eli N Perencevich - - Michael E Ohl - - Michihiko Goto - - Daniel J Livorsi + - '**Damon J A Toth**' + - Windy D Tanner + - '**Karim Khader**' + - Adi V Gundlapalli + publisher: Epidemics + date: '2016-05-07' + link: https://doi.org/10.1016/j.epidem.2016.04.002 + type: paper + year: 2016 +- id: doi:10.1542/hpeds.2015-0170 + title: Risk Factors for Recurrent Clostridium difficile Infection in Pediatric Inpatients. + authors: + - Elyse M Schwab + - Jacob Wilkes + - Kent Korgenski + - Adam L Hersh + - '**Andrew T Pavia**' + - Vanessa W Stevens + publisher: Hospital pediatrics + date: '2016-05-04' + link: https://doi.org/10.1542/hpeds.2015-0170 + type: paper + year: 2016 +- id: doi:10.1542/peds.2015-2360 + title: Influenza in Infants Born to Women Vaccinated During Pregnancy. + authors: + - Julie H Shakib + - Kent Korgenski + - Angela P Presson + - Xiaoming Sheng + - Michael W Varner + - '**Andrew T Pavia**' + - Carrie L Byington + publisher: Pediatrics + date: '2016-05-02' + link: https://doi.org/10.1542/peds.2015-2360 + type: paper + year: 2016 +- id: doi:10.1016/j.amepre.2015.10.016 + title: Economic Analysis of Veterans Affairs Initiative to Prevent Methicillin-Resistant + Staphylococcus aureus Infections. + authors: + - Richard E Nelson + - Vanessa W Stevens + - '**Karim Khader**' - Makoto Jones - - Justin P Albertson - - Rajeshwari Nair - - "Amy M J O\u2019Shea" + - Matthew H Samore + - Martin E Evans + - R Douglas Scott + - Rachel B Slayton - Marin L Schweizer - publisher: Clinical Infectious Diseases - date: '2017-03-31' - link: https://doi.org/gbjwbv - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1001/JAMAINTERNMED.2016.9045 - title: Comparative Effectiveness of Vancomycin and Metronidazole for the Prevention - of Recurrence and Death in Patients With Clostridium difficile Infection + - Eli L Perencevich + - '**Michael A Rubin**' + publisher: American journal of preventive medicine + date: '2016-05-01' + link: https://doi.org/10.1016/j.amepre.2015.10.016 + type: paper + year: 2016 +- id: doi:10.1371/journal.pone.0153690 + title: Estimates of Social Contact in a Middle School Based on Self-Report and Wireless + Sensor Data. authors: - - Vanessa W. Stevens - - Richard E. Nelson - - Elyse M. Schwab-Daugherty - - Karim Khader - - Makoto M. Jones - - Kevin A. Brown - - Tom Greene - - Lindsay D. Croft - - Melinda Neuhauser - - Peter Glassman - - Matthew Bidwell Goetz - - Matthew H. Samore - - Michael A. Rubin - publisher: JAMA Internal Medicine - date: '2017-04-01' - link: https://doi.org/gfxvd4 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIX474 - title: Management of Bacteriuria in Veterans Affairs Hospitals + - Molly Leecaster + - '**Damon J A Toth**' + - Warren B P Pettey + - Jeanette J Rainey + - Hongjiang Gao + - Amra Uzicanin + - Matthew Samore + publisher: PloS one + date: '2016-04-21' + link: https://doi.org/10.1371/journal.pone.0153690 + type: paper + year: 2016 +- id: doi:10.1101/049585 + title: From Visual Exploration to Storytelling and Back Again authors: - - Emily S Spivak - - Muriel Burk - - Rongping Zhang - - Makoto M Jones - - Melinda M. Neuhauser - - Matthew Bidwell Goetz - - Francesca E Cunningham - - Jason Wright - - Scott Johns - - Ariel Ma - - Jonathan Casavant - - James A Haley - - Bryan Cartmell - - Jaela Dahl - - Amanda Mercurio - - Ashley Haake - - Cynthia Muthusi - - Jenny Phabmixay - - Edward Hines - - Alexander B Chew - - Ursula Patel - - Susan Duquaine - - Marcus Kuoma - - Norman Mang - - Andrea Aylward - - Jessica Harris - - "Jessica O\u2019Brien" - - Jessica Dietz - - Rebecca Curtin - - Ann Fisher - - Lauren Manganiello - - "Jill O\u2019Donnell" - - Michael Surdy - - Brianna Morabito - - Theresa Page - - Joseph Pardo - - Amanda McQuillan - - Danielle Clare - - Tessa Deyle - - Rita Bodine - - Evan Kuyrkendall - - Jamie Guyear - - Lauri Witt - - Deborah Hobbs - - Ashley Scott - - Marci Swanson - - Kimberly T MacKay - - Eileen Wilbur - - Phalyn Butler - - Patricia Orlando - - Emily S Spivak - - Joshua Arnold - - Erin Loesch - - Nicole Fioravanti - - Victoria Tate - - Carol Allred - - Jennifer Cole - - Michelle Walker - - Lisa Young - - James J Peters - - Troy D Kish - - Kelcey Noble - - Kirsten Woelfel - - Pamela Foral - - Mara Carrasquillo - - Timothy P Gauthier - publisher: Clinical Infectious Diseases - date: '2017-05-24' - link: https://doi.org/gbwc9s - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000405678200018 - title: Outcomes Associated With Antimicrobial De-escalation of Treatment for Pneumonia - Within the Veterans Healthcare Administration - authors: [] - publisher: OPEN FORUM INFECTIOUS DISEASES - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000405678200018 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2017.238 - title: Prevalence and Factors Associated With Multidrug-Resistant Gram-Negative - Organisms in Patients With Spinal Cord Injury + - Gratzl S + - '**Lex A**' + - Gehlenborg N + - Cosgrove N + - Streit M + publisher: Computer Graphics Forum + date: '2016-04-20' + link: https://doi.org/10.1101/049585 + type: paper + year: 2016 +- id: doi:10.7326/m15-1754 + title: 'Importation, Antibiotics, and Clostridium difficile Infection in Veteran + Long-Term Care: A Multilevel Case-Control Study.' authors: - - Charlesnika T. Evans - - Margaret A. Fitzpatrick - - Makoto M. Jones - - Stephen P. Burns - - Linda Poggensee - - Swetha Ramanathan - - Sherri L. LaVela - - Nasia Safdar - - Katie J. Suda - publisher: Infection Control & Hospital Epidemiology - date: '2017-11-21' - link: https://doi.org/hbz8cn - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIX532 - title: 'The Drivers of Acute and Long-term Care Clostridium difficile Infection - Rates: A Retrospective Multilevel Cohort Study of 251 Facilities' + - Brown KA + - '**Jones M**' + - Daneman N + - Adler FR + - Stevens V + - Nechodom KE + - Goetz MB + - Samore MH + - Mayer J + publisher: Annals of internal medicine + date: '2016-04-19' + link: https://doi.org/10.7326/m15-1754 + type: paper + year: 2016 +- id: doi:10.1016/j.adolescence.2016.03.012 + title: 'Trajectories of adolescent substance use development and the influence of + healthy leisure: A growth mixture modeling approach.' authors: - - Kevin Antoine Brown - - Nick Daneman - - Makoto Jones - - Kevin Nechodom - - Vanessa Stevens - - Frederick R Adler - - Matthew Bidwell Goetz - - Jeanmarie Mayer - - Matthew Samore - publisher: Clinical Infectious Diseases - date: '2017-06-08' - link: https://doi.org/gcf527 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2017.98 - title: Variation in Empiric Coverage Versus Detection of Methicillin-ResistantStaphylococcus - aureusandPseudomonas aeruginosain Hospitalizations for Community-Onset - Pneumonia Across 128 US Veterans Affairs Medical Centers - authors: - - Barbara E. Jones - - Kevin Antoine Brown - - Makoto M. Jones - - Benedikt D. Huttner - - Tom Greene - - Brian C. Sauer - - Karl Madaras-Kelly - - Michael A. Rubin - - Matthew Bidwell Goetz - - Matthew H. Samore - publisher: Infection Control & Hospital Epidemiology - date: '2017-06-21' - link: https://doi.org/gt59gb - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1371/JOURNAL.PONE.0152248 + - '**Weybright EH**' + - Caldwell LL + - Ram N + - Smith EA + - Wegner L + publisher: Journal of adolescence + date: '2016-04-11' + link: https://doi.org/10.1016/j.adolescence.2016.03.012 + type: paper + year: 2016 +- id: doi:10.1016/j.jbi.2016.03.023 + title: 'Using network projections to explore co-incidence and context in large clinical + datasets: Application to homelessness among U.S. Veterans.' + authors: + - Pettey WB + - '**Toth DJ**' + - '**Redd A**' + - Carter ME + - Samore MH + - Gundlapalli AV + publisher: Journal of biomedical informatics + date: '2016-04-01' + link: https://doi.org/10.1016/j.jbi.2016.03.023 + type: paper + year: 2016 +- id: doi:10.1109/pacificvis.2016.7465252 + title: Rethinking sensitivity analysis of nuclear simulations with topology + authors: + - Dan Maljovec + - Bei Wang + - '**Paul Rosen**' + - Andrea Alfonsi + - Giovanni Pastore + - Cristian Rabiti + - Valerio Pascucci + publisher: IEEE Pacific Visualization Symposium + date: '2016-04-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84973616993&partnerID=MN8TOARS + type: paper + year: 2016 +- id: doi:10.1093/ofid/ofw071 + title: Identification of Bacterial and Viral Codetections With Mycoplasma pneumoniae + Using the TaqMan Array Card in Patients Hospitalized With Community-Acquired Pneumonia. + authors: + - Maureen H Diaz + - Kristen E Cross + - Alvaro J Benitez + - Lauri A Hicks + - Preeta Kutty + - Anna M Bramley + - James D Chappell + - Weston Hymas + - Anami Patel + - Chao Qi + - Derek J Williams + - Sandra R Arnold + - Krow Ampofo + - Wesley H Self + - Carlos G Grijalva + - Evan J Anderson + - Jonathan A McCullers + - '**Andrew T Pavia**' + - Richard G Wunderink + - Kathryn M Edwards + - Seema Jain + - Jonas M Winchell + publisher: Open forum infectious diseases + date: '2016-03-30' + link: https://doi.org/10.1093/ofid/ofw071 + type: paper + year: 2016 +- id: doi:10.1371/journal.pone.0152248 title: An Economic Analysis of Strategies to Control Clostridium Difficile Transmission and Infection Using an Agent-Based Simulation Model authors: - - Richard E. Nelson - - Makoto Jones + - Richard E Nelson + - '**Makoto Jones**' - Molly Leecaster - - Matthew H. Samore + - Matthew H Samore - William Ray - Angela Huttner - Benedikt Huttner - - Karim Khader - - Vanessa W. Stevens + - '**Karim Khader**' + - Vanessa W Stevens - Dale Gerding - - Marin L. Schweizer - - Michael A. Rubin + - Marin L Schweizer + - '**Michael A Rubin**' publisher: PLOS ONE - date: '2016-03-31' - link: https://doi.org/f8ws8g - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/JAC/DKV338 - title: Antimicrobial de-escalation of treatment for healthcare-associated pneumonia - within the Veterans Healthcare Administration + date: '2016-03-30' + link: https://doi.org/10.1371/journal.pone.0152248 + type: paper + year: 2016 +- id: doi:10.1016/j.jpeds.2016.02.049 + title: Community-Acquired Pneumonia Hospitalization among Children with Neurologic + Disorders. authors: - - Karl Madaras-Kelly - - Makoto Jones - - Richard Remington - - Christina M. Caplinger - - Benedikt Huttner - - Barbara Jones - - Matthew Samore - publisher: Journal of Antimicrobial Chemotherapy - date: '2015-11-03' - link: https://doi.org/f8n2pd - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1109/ICHI.2016.39 - title: Big-Data Based Decision-Support Systems to Improve Clinicians' Cognition + - Alexander J Millman + - Lyn Finelli + - Anna M Bramley + - Georgina Peacock + - Derek J Williams + - Sandra R Arnold + - Carlos G Grijalva + - Evan J Anderson + - Jonathan A McCullers + - Krow Ampofo + - '**Andrew T Pavia**' + - Kathryn M Edwards + - Seema Jain + publisher: The Journal of pediatrics + date: '2016-03-23' + link: https://doi.org/10.1016/j.jpeds.2016.02.049 + type: paper + year: 2016 +- id: doi:10.1093/jpids/piw008 + title: Therapeutic Drug Monitoring of Ganciclovir Treatment for Cytomegalovirus + Infections Among Immunocompromised Children. authors: - - Don Roosan - - Matthew Samore - - Makoto Jones - - Yarden Livnat - - Justin Clutter - publisher: 2016 IEEE International Conference on Healthcare Informatics (ICHI) - date: '2016-10-01' - link: https://doi.org/hbz8cp - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2016.26 + - Chris Stockmann + - Catherine M T Sherwin + - Elizabeth D Knackstedt + - Adam L Hersh + - '**Andrew T Pavia**' + - Michael G Spigarelli + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2016-03-08' + link: https://doi.org/10.1093/jpids/piw008 + type: paper + year: 2016 +- id: doi:10.1109/tvcg.2016.2534538 + title: 'Critical Point Cancellation in 3D Vector Fields: Robustness and Discussion.' + authors: + - Skraba P + - '**Rosen P**' + - Wang B + - Chen G + - Bhatia H + - Pascucci V + publisher: IEEE transactions on visualization and computer graphics + date: '2016-02-28' + link: https://doi.org/10.1109/tvcg.2016.2534538 + type: paper + year: 2016 +- id: doi:10.1017/ice.2016.26 title: 'Characteristics of Antimicrobial Stewardship Programs at Veterans Affairs - Hospitals: Results of a Nationwide Survey' + Hospitals: Results of a Nationwide Survey.' authors: - - Ann F. Chou - - Christopher J. Graber - - Makoto Jones - - Yue Zhang - - Matthew Bidwell Goetz - - Karl Madaras-Kelly - - Matthew Samore - - Allison Kelly - - Peter A. Glassman - publisher: Infection Control & Hospital Epidemiology + - Chou AF + - Graber CJ + - '**Jones M**' + - Zhang Y + - Goetz MB + - Madaras-Kelly K + - Samore M + - Kelly A + - Glassman PA + publisher: Infection control and hospital epidemiology date: '2016-02-24' - link: https://doi.org/f8ptz5 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.AMEPRE.2015.10.016 - title: Economic Analysis of Veterans Affairs Initiative to Prevent Methicillin-Resistant - Staphylococcus aureus Infections + link: https://doi.org/10.1017/ice.2016.26 + type: paper + year: 2016 +- id: doi:10.32614/cran.package.netdiffuser + title: 'netdiffuseR: Analysis of Diffusion and Contagion Processes on Networks' authors: - - Richard E. Nelson - - Vanessa W. Stevens - - Karim Khader - - Makoto Jones - - Matthew H. Samore - - Martin E. Evans - - R. Douglas Scott - - Rachel B. Slayton - - Marin L. Schweizer - - Eli L. Perencevich - - Michael A. Rubin - publisher: American Journal of Preventive Medicine - date: '2016-05-01' - link: https://doi.org/gnwgxg - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.4338/ACI-2015-12-RA-0182 - title: Feasibility of population health analytics and data visualization for decision - support in the infectious diseases domain + - '**George Vega Yon**' + - Thomas Valente + - Anibal Olivera Morales + publisher: 'CRAN: Contributed Packages' + date: '2016-02-18' + link: http://dx.doi.org/10.32614/cran.package.netdiffuser + type: paper + year: 2016 +- id: doi:10.1016/j.jtbi.2016.01.022 + title: Estimating finite-population reproductive numbers in heterogeneous populations. authors: - - Guilherme Del Fiol - - Jorie Butler - - Yarden Livnat - - Jeanmarie Mayer - - Matthew Samore - - Makoto Jones - - Charlene Weir - - Don Roosan - publisher: Applied Clinical Informatics - date: '2016-04-01' - link: https://doi.org/gbjv4j - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.7326/M15-1754 - title: Importation, Antibiotics, and Clostridium difficile Infection in Veteran - Long-Term Care - authors: - - Kevin A. Brown - - Makoto Jones - - Nick Daneman - - Frederick R. Adler - - Vanessa Stevens - - Kevin E. Nechodom - - Matthew B. Goetz - - Matthew H. Samore - - Jeanmarie Mayer - publisher: Annals of Internal Medicine - date: '2016-06-21' - link: https://doi.org/f8tsc7 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/S13756-016-0135-2 - title: Regional variations in fluoroquinolone non-susceptibility among Escherichia - coli bloodstream infections within the Veterans Healthcare Administration - authors: - - Daniel J. Livorsi - - Michihiko Goto - - Margaret Carrel - - Makoto M. Jones - - Jennifer McDanel - - Rajeshwari Nair - - Bruce Alexander - - Brice Beck - - Kelly K. Richardson - - Eli N. Perencevich - publisher: Antimicrobial Resistance & Infection Control - date: '2016-10-19' - link: https://doi.org/hbz8cq - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIW423 - title: 'The Effect of a Nationwide Infection Control Program Expansion on Hospital-Onset - Gram-Negative Rod Bacteremia in 130 Veterans Health Administration Medical Centers: - An Interrupted Time-Series Analysis' + - '**Keegan LT**' + - Dushoff J + publisher: Journal of theoretical biology + date: '2016-02-15' + link: https://doi.org/10.1016/j.jtbi.2016.01.022 + type: paper + year: 2016 +- id: doi:10.1109/bhi.2016.7455946 + title: 'Supporting novice clinicians cognitive strategies: System design perspective.' authors: - - Michihiko Goto - - Amy M. J. O'Shea - - Daniel J. Livorsi - - Jennifer S. McDanel - - Makoto M. Jones - - Kelly K. Richardson - - Brice F. Beck - - Bruce Alexander - - Martin E. Evans - - Gary A. Roselle - - Stephen M. Kralovic - - Eli N. Perencevich - publisher: Clinical Infectious Diseases - date: '2016-06-28' - link: https://doi.org/f85wf8 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2016.60 - title: "Unique Risks and Clinical Outcomes Associated With Extended-Spectrum \u03B2\ - -Lactamase Enterobacteriaceae in Veterans With Spinal Cord Injury or Disorder:\ - \ A Case-Case-Control Study" - authors: - - Margaret A. Fitzpatrick - - Katie J. Suda - - Nasia Safdar - - Barry Goldstein - - Makoto M. Jones - - Linda Poggensee - - Swetha Ramanathan - - Ryan LeWan - - Charlesnika T. Evans - publisher: Infection Control & Hospital Epidemiology - date: '2016-03-30' - link: https://doi.org/f8tk2h - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000390749601244 - title: Variation In Detection And Coverage Of Resistant Pathogens In Hospitalized - Veterans With Pneumonia At 128 Medical Centers - authors: [] - publisher: AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000390749601244 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.AJIC.2014.09.016 - title: 'Collateral benefit of screening patients for methicillin-resistant Staphylococcus - aureus at hospital admission: Isolation of patients with multidrug-resistant gram-negative - bacteria' + - Roosan Islam + - '**Jeanmarie Mayer**' + - Justin Clutter + publisher: '... IEEE-EMBS International Conference on Biomedical and Health Informatics. + IEEE-EMBS International Conference on Biomedical and Health Informatics' + date: '2016-02-01' + link: https://doi.org/10.1109/bhi.2016.7455946 + type: paper + year: 2016 +- id: doi:10.1310/hpj5102-149 + title: Antimicrobial Stewardship Knowledge, Attitudes, and Practices among Health + Care Professionals at Small Community Hospitals. authors: - - Makoto Jones - - Christopher Nielson + - Whitney R Buckel + - Adam L Hersh + - '**Andy T Pavia**' + - Peter S Jones + - Ashli A Owen-Smith + - Edward Stenehjem + publisher: Hospital pharmacy + date: '2016-02-01' + link: https://doi.org/10.1310/hpj5102-149 + type: paper + year: 2016 +- id: doi:10.1109/tvcg.2015.2467911 + title: 'Vials: Visualizing Alternative Splicing of Genes.' + authors: + - Strobelt H + - Alsallakh B + - Botros J + - Peterson B + - Borowsky M + - Pfister H + - '**Lex A**' + publisher: IEEE transactions on visualization and computer graphics + date: '2016-01-30' + link: https://doi.org/10.1109/tvcg.2015.2467911 + type: paper + year: 2016 +- id: doi:10.1093/cid/civ1219 + title: 'Editorial Commentary: The Modern Quest for the "Holy Grail" of Pneumonia + Etiology.' + authors: + - Seema Jain + - '**Andrew T Pavia**' + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2016-01-07' + link: https://doi.org/10.1093/cid/civ1219 + type: paper + year: 2016 +- id: doi:10.1093/infdis/jiv579 + title: 'Influenza Vaccine Effectiveness: Mysteries, Enigmas, and a Few Clues.' + authors: + - '**Andrew T Pavia**' + publisher: The Journal of infectious diseases + date: '2016-01-06' + link: https://doi.org/10.1093/infdis/jiv579 + type: paper + year: 2016 +- id: doi:10.1007/978-3-319-24523-2_3 + title: 'muView: A visual analysis system for exploring uncertainty in myocardial + ischemia simulations' + authors: + - '**Paul Rosen**' + - Brett Burton + - Kristin Potter + - Chris R. Johnson + publisher: Mathematics and Visualization + date: '2016-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84978224574&partnerID=MN8TOARS + type: paper + year: 2016 +- id: doi:10.3233/978-1-61499-664-4-33 + title: 'PlateRunner: A Search Engine to Identify EMR Boilerplates.' + authors: + - Divita G + - Workman TE + - Carter ME + - '**Redd A**' + - Samore MH + - Gundlapalli AV + publisher: Studies in health technology and informatics + date: '2016-01-01' + link: https://doi.org/10.3233/978-1-61499-664-4-33 + type: paper + year: 2016 +- id: doi:10.3233/978-1-61499-664-4-79 + title: 'Finding ''Evidence of Absence'' in Medical Notes: Using NLP for Clinical + Inferencing.' + authors: + - Marjorie E Carter + - Guy Divita + - '**Andrew Redd**' + - '**Michael A Rubin**' + - Matthew H Samore - Kalpana Gupta - - Karim Khader - - Martin Evans - publisher: American Journal of Infection Control - date: '2015-01-01' - link: https://doi.org/hbz8cr - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2015.231 - title: 'Cumulative Attributable Difference: An Infection Metric That Reflects a - Value System' - authors: - - Makoto M. Jones - - Richard E. Nelson - - Michael A. Rubin - publisher: Infection Control & Hospital Epidemiology - date: '2015-09-29' - link: https://doi.org/hbz8cs - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/S12879-015-0933-9 - title: Description and validation of a spectrum score method to measure antimicrobial - de-escalation in healthcare associated pneumonia from electronic medical records + - Barbara W Trautner + - Adi V Gundlapalli + publisher: Studies in health technology and informatics + date: '2016-01-01' + link: https://pubmed.ncbi.nlm.nih.gov/27350471/ + type: paper + year: 2016 +- id: insightnet:c9cba6cc53e7883ef2c4 + title: Data scalable approach for identifying correlation in large and muti-dimensional data + authors: [] + publisher: VISIGRAPP 2016 - Proceedings of the 11th Joint Conference on Computer + Vision, Imaging and Computer Graphics Theory and Applications - Doctoral Consortium + date: '2016-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84966545459&partnerID=MN8TOARS + type: paper + year: 2016 +- id: doi:10.1109/ichi.2016.39 + title: Big-Data Based Decision-Support Systems to Improve Clinicians' Cognition. authors: - - Karl Madaras-Kelly - - Makoto Jones - - Richard Remington - - Christina Caplinger - - Benedikt Huttner - - Matthew Samore - publisher: BMC Infectious Diseases - date: '2015-04-25' - link: https://doi.org/gb32xv - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2015.132 - title: 'Excess Length of Stay Attributable to Clostridium difficile Infection - (CDI) in the Acute Care Setting: A Multistate Model' - authors: - - Vanessa W. Stevens + - Roosan D + - Samore M + - '**Jones M**' + - Livnat Y + - Clutter J + publisher: Proceedings. IEEE International Conference on Healthcare Informatics + date: '2016-01-01' + link: https://doi.org/10.1109/ichi.2016.39 + type: paper + year: 2016 +- id: doi:10.1080/08897077.2015.1134754 + title: 'Perceptions of alcohol use by friends compared to peers: Associations with + middle adolescents'' own use.' + authors: + - Beckmeyer JJ + - '**Weybright EH**' + publisher: Substance abuse + date: '2015-12-29' + link: https://doi.org/10.1080/08897077.2015.1134754 + type: paper + year: 2015 +- id: doi:10.1186/s12911-015-0221-z + title: Understanding complex clinical reasoning in infectious diseases for improving + clinical decision support design. + authors: + - Islam R + - Weir CR + - '**Jones M**' + - Del Fiol G + - Samore MH + publisher: BMC medical informatics and decision making + date: '2015-11-30' + link: https://doi.org/10.1186/s12911-015-0221-z + type: paper + year: 2015 +- id: doi:10.1017/ice.2015.231 + title: 'Cumulative Attributable Difference: An Infection Metric That Reflects a + Value System.' + authors: + - '**Jones MM**' + - Nelson RE + - '**Rubin MA**' + publisher: Infection control and hospital epidemiology + date: '2015-11-23' + link: https://doi.org/10.1017/ice.2015.231 + type: paper + year: 2015 +- id: doi:10.3414/me14-02-0018 + title: Scaling-up NLP Pipelines to Process Large Corpora of Clinical Notes. + authors: + - Divita G + - Carter M + - '**Redd A**' + - Zeng Q + - Gupta K + - Trautner B + - Samore M + - Gundlapalli A + publisher: Methods of information in medicine + date: '2015-11-04' + link: https://doi.org/10.3414/me14-02-0018 + type: paper + year: 2015 +- id: doi:10.1186/s12911-015-0208-9 + title: Predicting asthma control deterioration in children. + authors: + - Gang Luo + - Bryan L Stone + - Bernhard Fassl + - Christopher G Maloney + - '**Per H Gesteland**' + - Sashidhar R Yerram + - Flory L Nkoy + publisher: BMC medical informatics and decision making + date: '2015-10-14' + link: https://doi.org/10.1186/s12911-015-0208-9 + type: paper + year: 2015 +- id: doi:10.1073/pnas.1516698112 + title: Cross-immunity between strains explains the dynamical pattern of paramyxoviruses. + authors: + - Samit Bhattacharyya + - '**Per H Gesteland**' + - Kent Korgenski + - Ottar N Bjørnstad + - Frederick R Adler + publisher: Proceedings of the National Academy of Sciences of the United States + of America + date: '2015-10-12' + link: https://doi.org/10.1073/pnas.1516698112 + type: paper + year: 2015 +- id: doi:10.1097/mlr.0000000000000403 + title: 'Reducing Time-dependent Bias in Estimates of the Attributable Cost of Health + Care-associated Methicillin-resistant Staphylococcus aureus Infections: A Comparison + of Three Estimation Strategies.' + authors: + - Nelson RE + - Samore MH + - '**Jones M**' + - Greene T + - Stevens VW + - Liu CF + - Graves N + - Evans MF + - '**Rubin MA**' + publisher: Medical care + date: '2015-09-01' + link: https://doi.org/10.1097/mlr.0000000000000403 + type: paper + year: 2015 +- id: doi:10.1109/tvcg.2015.2440250 + title: Robustness-Based Simplification of 2D Steady and Unsteady Vector Fields. + authors: + - Skraba P + - Bei Wang + - Guoning Chen + - '**Rosen P**' + publisher: IEEE transactions on visualization and computer graphics + date: '2015-08-01' + link: https://doi.org/10.1109/tvcg.2015.2440250 + type: paper + year: 2015 +- id: doi:10.3201/eid2108.150170 + title: Estimates of Outbreak Risk from New Introductions of Ebola with Immediate + and Delayed Transmission Control. + authors: + - '**Toth DJ**' + - Gundlapalli AV + - Khader K + - Pettey WB + - Rubin MA + - Adler FR + - Samore MH + publisher: Emerging infectious diseases + date: '2015-08-01' + link: https://doi.org/10.3201/eid2108.150170 + type: paper + year: 2015 +- id: doi:10.1371/journal.pone.0132664 + title: 'Identifying Homelessness among Veterans Using VA Administrative Data: Opportunities + to Expand Detection Criteria.' + authors: + - Peterson R + - Gundlapalli AV + - Metraux S + - Carter ME + - Palmer M + - '**Redd A**' + - Samore MH + - Fargo JD + publisher: PloS one + date: '2015-07-14' + link: https://doi.org/10.1371/journal.pone.0132664 + type: paper + year: 2015 +- id: doi:10.1098/rsif.2015.0279 + title: The role of heterogeneity in contact timing and duration in network models + of influenza spread in schools. + authors: + - '**Damon J A Toth**' + - Molly Leecaster + - Warren B P Pettey + - Adi V Gundlapalli + - Hongjiang Gao + - Jeanette J Rainey + - Amra Uzicanin + - Matthew H Samore + publisher: Journal of the Royal Society, Interface + date: '2015-07-06' + link: https://doi.org/10.1098/rsif.2015.0279 + type: paper + year: 2015 +- id: doi:10.1111/evo.12690 + title: Recent and rapid population growth and range expansion of the Lyme disease + tick vector, Ixodes scapularis, in North America. + authors: + - Khatchikian CE + - Prusinski MA + - Stone M + - Backenson PB + - Wang IN + - Foley E + - '**Seifert SN**' + - Levy MZ + - Brisson D + publisher: Evolution; international journal of organic evolution + date: '2015-07-06' + link: https://doi.org/10.1111/evo.12690 + type: paper + year: 2015 +- id: doi:10.1017/ice.2015.129 + title: The Magnitude of Time-Dependent Bias in the Estimation of Excess Length of + Stay Attributable to Healthcare-Associated Infections. + authors: + - Richard E Nelson + - Scott D Nelson - Karim Khader - - Richard E. Nelson + - Eli L Perencevich + - Marin L Schweizer + - '**Michael A Rubin**' + - Nicholas Graves + - Stephan Harbarth + - Vanessa W Stevens + - Matthew H Samore + publisher: Infection control and hospital epidemiology + date: '2015-06-04' + link: https://doi.org/10.1017/ice.2015.129 + type: paper + year: 2015 +- id: doi:10.1017/ice.2015.132 + title: 'Excess Length of Stay Attributable to Clostridium difficile Infection (CDI) + in the Acute Care Setting: A Multistate Model.' + authors: + - Vanessa W Stevens + - Karim Khader + - Richard E Nelson - Makoto Jones - - Michael A. Rubin - - Kevin A. Brown - - Martin E. Evans + - '**Michael A Rubin**' + - Kevin A Brown + - Martin E Evans - Tom Greene - Eric Slade - - Matthew H. Samore - publisher: Infection Control & Hospital Epidemiology + - Matthew H Samore + publisher: Infection control and hospital epidemiology date: '2015-05-26' - link: https://doi.org/f7q4fk - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.3233/978-1-61499-564-7-1035 - title: Extraction of Vital Signs from Clinical Notes - authors: - - ' Patterson Olga V.' - - ' Jones Makoto' - - ' Yao Yiwen' - - ' Viernes Benjamin' - - ' Alba Patrick R.' - - ' Iwashyna Theodore J.' - - ' DuVall Scott L.' - publisher: Studies in Health Technology and Informatics + link: https://doi.org/10.1017/ice.2015.132 + type: paper + year: 2015 +- id: doi:10.1128/jvi.00137-15 + title: Antibody escape kinetics of equine infectious anemia virus infection of horses. + authors: + - '**Schwartz EJ**' + - Nanda S + - Mealey RH + publisher: Journal of virology + date: '2015-04-15' + link: https://doi.org/10.1128/jvi.00137-15 + type: paper + year: 2015 +- id: doi:10.1016/j.mbs.2015.04.001 + title: Free-virus and cell-to-cell transmission in models of equine infectious anemia + virus infection. + authors: + - Allen LJ + - '**Schwartz EJ**' + publisher: Mathematical biosciences + date: '2015-04-10' + link: https://doi.org/10.1016/j.mbs.2015.04.001 + type: paper + year: 2015 +- id: doi:10.1016/j.mbs.2015.03.007 + title: 'Estimating epidemic parameters: Application to H1N1 pandemic data.' + authors: + - '**Schwartz EJ**' + - Choi B + - Rempala GA + publisher: Mathematical biosciences + date: '2015-04-02' + link: https://doi.org/10.1016/j.mbs.2015.03.007 + type: paper + year: 2015 +- id: doi:10.1016/j.tig.2015.02.006 + title: Evolution and population genomics of the Lyme borreliosis pathogen, Borrelia + burgdorferi. + authors: + - '**Seifert SN**' + - Khatchikian CE + - Zhou W + - Brisson D + publisher: 'Trends in genetics : TIG' + date: '2015-03-09' + link: https://doi.org/10.1016/j.tig.2015.02.006 + type: paper + year: 2015 +- id: doi:10.1017/ice.2015.22 + title: The impact of healthcare-associated methicillin-resistant Staphylococcus + aureus infections on post-discharge healthcare costs and utilization. + authors: + - '**Nelson RE**' + - '**Jones M**' + - Liu CF + - '**Samore MH**' + - Evans ME + - Graves N + - Lee B + - '**Rubin MA**' + publisher: Infection control and hospital epidemiology + date: '2015-02-26' + link: https://doi.org/10.1017/ice.2015.22 + type: paper + year: 2015 +- id: doi:10.3233/978-1-61499-538-8-175 + title: 'Taming Big Data: An Information Extraction Strategy for Large Clinical Text + Corpora.' + authors: + - Gundlapalli AV + - Divita G + - Carter ME + - '**Redd A**' + - Samore MH + - Gupta K + - Trautner B + publisher: Studies in health technology and informatics date: '2015-01-01' - link: https://doi.org/hbz8ct - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.AJIC.2014.09.014 - title: "Health care\u2013associated methicillin-resistant Staphylococcus aureus\ - \ infections increases the risk of postdischarge mortality" - authors: - - Richard E. Nelson - - Vanessa W. Stevens - - Makoto Jones - - Matthew H. Samore - - Michael A. Rubin - publisher: American Journal of Infection Control + link: https://doi.org/10.3233/978-1-61499-538-8-175 + type: paper + year: 2015 +- id: insightnet:142abead462b601ff8a1 + title: Scaling Out and Evaluation of OBSecAn, an Automated Section Annotator for + Semi-Structured Clinical Documents, on a Large VA Clinical Corpus + authors: [] + publisher: AMIA ... Annual Symposium proceedings. AMIA Symposium + date: '2015-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85045040619&partnerID=MN8TOARS + type: paper + year: 2015 +- id: doi:10.2312/eurovisshort.20151124 + title: 'OceanPaths: Visualizing Multivariate Oceanography Data' + authors: [] + publisher: Eurographics Conference on Visualization (EuroVis) - Short Papers + date: '2015-01-01' + link: https://diglib.eg.org/handle/10.2312/eurovisshort.20151124.049-053 + type: paper + year: 2015 +- id: doi:10.3233/978-1-61499-538-8-179 + title: 'Nora: A Vocabulary Discovery Tool for Concept Extraction.' + authors: + - Divita G + - Carter ME + - Durgahee BS + - Pettey WE + - '**Redd A**' + - Samore MH + - Gundlapalli AV + publisher: Studies in health technology and informatics + date: '2015-01-01' + link: https://doi.org/10.3233/978-1-61499-538-8-179 + type: paper + year: 2015 +- id: doi:10.1016/j.ajic.2014.09.014 + title: Health care-associated methicillin-resistant Staphylococcus aureus infections + increases the risk of postdischarge mortality. + authors: + - Nelson RE + - Stevens VW + - '**Jones M**' + - Samore MH + - '**Rubin MA**' + publisher: American journal of infection control + date: '2015-01-01' + link: https://doi.org/10.1016/j.ajic.2014.09.014 + type: paper + year: 2015 +- id: doi:10.1007/978-3-319-27857-5_30 + title: Guidance on the selection of central difference method accuracy in volume + rendering + authors: + - Kazuhiro Nagai + - '**Paul Rosen**' + publisher: Lecture Notes in Computer Science (including subseries Lecture Notes + in Artificial Intelligence and Lecture Notes in Bioinformatics) date: '2015-01-01' - link: https://doi.org/hbz8cv - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/JAC/DKU388 - title: Initiation and termination of antibiotic regimens in Veterans Affairs hospitals - authors: - - B. Huttner - - M. Jones - - K. Madaras-Kelly - - M. M. Neuhauser - - M. A. Rubin - - M. B. Goetz - - M. H. Samore - publisher: Journal of Antimicrobial Chemotherapy + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84952663611&partnerID=MN8TOARS + type: paper + year: 2015 +- id: insightnet:9935ba51405a731c88b9 + title: Evaluation of PHI Hunter in Natural Language Processing Research + authors: [] + publisher: Perspectives in health information management + date: '2015-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-85020319704&partnerID=MN8TOARS + type: paper + year: 2015 +- id: doi:10.1080/01490400.2015.1014530 + title: Boredom Prone or Nothing to Do? Distinguishing Between State and Trait Leisure + Boredom and its Association with Substance Use in South African Adolescents. + authors: + - '**Weybright EH**' + - Caldwell LL + - Ram N + - Smith EA + - Wegner L + publisher: Leisure sciences + date: '2015-01-01' + link: https://doi.org/10.1080/01490400.2015.1014530 + type: paper + year: 2015 +- id: doi:10.1109/tvcg.2014.2346248 + title: 'UpSet: Visualization of Intersecting Sets.' + authors: + - '**Lex A**' + - Gehlenborg N + - Strobelt H + - Vuillemot R + - Pfister H + publisher: IEEE transactions on visualization and computer graphics + date: '2014-12-01' + link: https://doi.org/10.1109/tvcg.2014.2346248 + type: paper + year: 2014 +- id: doi:10.1109/tvcg.2014.2346260 + title: 'Domino: Extracting, Comparing, and Manipulating Subsets Across Multiple + Tabular Datasets.' + authors: + - Gratzl S + - Gehlenborg N + - '**Lex A**' + - Pfister H + - Streit M + publisher: IEEE transactions on visualization and computer graphics + date: '2014-12-01' + link: https://doi.org/10.1109/tvcg.2014.2346260 + type: paper + year: 2014 +- id: doi:10.1109/tvcg.2014.2346752 + title: 'ConTour: Data-Driven Exploration of Multi-Relational Datasets for Drug Discovery.' + authors: + - Partl C + - '**Lex A**' + - Streit M + - Strobelt H + - Wassermann AM + - Pfister H + - Schmalstieg D + publisher: IEEE transactions on visualization and computer graphics + date: '2014-12-01' + link: https://doi.org/10.1109/tvcg.2014.2346752 + type: paper + year: 2014 +- id: doi:10.1016/j.ajic.2014.09.016 + title: 'Collateral benefit of screening patients for methicillin-resistant Staphylococcus + aureus at hospital admission: isolation of patients with multidrug-resistant gram-negative + bacteria.' + authors: + - '**Jones M**' + - Nielson C + - Gupta K + - '**Khader K**' + - Evans M + publisher: American journal of infection control + date: '2014-11-07' + link: https://doi.org/10.1016/j.ajic.2014.09.016 + type: paper + year: 2014 +- id: doi:10.1053/j.ajkd.2014.08.019 + title: 'Utility and validity of estimated GFR-based surrogate time-to-event end + points in CKD: a simulation study.' + authors: + - Greene T + - Teng CC + - Inker LA + - '**Redd A**' + - Ying J + - Woodward M + - Coresh J + - Levey AS + publisher: 'American journal of kidney diseases : the official journal of the National + Kidney Foundation' + date: '2014-10-30' + link: https://doi.org/10.1053/j.ajkd.2014.08.019 + type: paper + year: 2014 +- id: doi:10.1017/s0950268814002568 + title: Modelling the epidemic spread of an H1N1 influenza outbreak in a rural university + town. + authors: + - Vaidya NK + - Morgan M + - Jones T + - Miller L + - Lapin S + - '**Schwartz EJ**' + publisher: Epidemiology and infection + date: '2014-10-17' + link: https://doi.org/10.1017/s0950268814002568 + type: paper + year: 2014 +- id: doi:10.1017/s0950268814002684 + title: 'Pandemic 2009 H1N1 influenza in two settings in a small community: the workplace + and the university campus.' + authors: + - '**Schwartz EJ**' + - Morgan M + - Lapin S + publisher: Epidemiology and infection + date: '2014-10-13' + link: https://doi.org/10.1017/s0950268814002684 + type: paper + year: 2014 +- id: doi:10.1093/jac/dku388 + title: Initiation and termination of antibiotic regimens in Veterans Affairs hospitals. + authors: + - Huttner B + - '**Jones M**' + - Madaras-Kelly K + - Neuhauser MM + - '**Rubin MA**' + - Goetz MB + - Samore MH + publisher: The Journal of antimicrobial chemotherapy date: '2014-10-06' - link: https://doi.org/f63wjf - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1097/MLR.0000000000000403 - title: "Reducing Time-dependent Bias in Estimates of the Attributable Cost of Health\ - \ Care\u2013associated Methicillin-resistant Staphylococcus aureus Infections" - authors: - - Richard E. Nelson - - Matthew H. Samore - - Makoto Jones - - Tom Greene - - Vanessa W. Stevens - - Chuan-Fen Liu - - Nicholas Graves - - Martin F. Evans - - Michael A. Rubin - publisher: Medical Care - date: '2015-09-01' - link: https://doi.org/f7qcv3 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1017/ICE.2015.22 - title: The Impact of Healthcare-Associated Methicillin-Resistant Staphylococcus - Aureus Infections on Post-Discharge Healthcare Costs and Utilization - authors: - - Richard E. Nelson - - Makoto Jones - - Chuan-Fen Liu - - Matthew H. Samore - - Martin E. Evans - - Nicholas Graves - - Bruce Lee - - Michael A. Rubin - publisher: Infection Control & Hospital Epidemiology - date: '2015-02-26' - link: https://doi.org/f68bhp - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIV629 - title: "Trends in Antibiotic Use and Nosocomial Pathogens in Hospitalized Veterans\ - \ With Pneumonia at 128 Medical Centers, 2006\u20132010" - authors: - - Barbara E. Jones - - Makoto M. Jones - - Benedikt Huttner - - Gregory Stoddard - - Kevin Antoine Brown - - Vanessa W. Stevens - - Tom Greene - - Brian Sauer - - Karl Madaras-Kelly - - Michael Rubin - - Matthew Bidwell Goetz - - Matthew Samore - publisher: Clinical Infectious Diseases - date: '2015-07-29' - link: https://doi.org/f7t6ms - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/S12911-015-0221-Z - title: Understanding complex clinical reasoning in infectious diseases for improving - clinical decision support design + link: https://doi.org/10.1093/jac/dku388 + type: paper + year: 2014 +- id: doi:10.1038/nmeth.3088 + title: Guided visual exploration of genomic stratifications in cancer. + authors: + - Streit M + - '**Lex A**' + - Gratzl S + - Partl C + - Schmalstieg D + - Pfister H + - Park PJ + - Gehlenborg N + publisher: Nature methods + date: '2014-09-01' + link: https://doi.org/10.1038/nmeth.3088 + type: paper + year: 2014 +- id: doi:10.1186/1753-6561-8-s2-s5 + title: 'Mu-8: visualizing differences between proteins and their families.' + authors: + - Mercer JD + - Pandian B + - '**Lex A**' + - Bonneel N + - Pfister H + publisher: BMC proceedings + date: '2014-08-28' + link: https://doi.org/10.1186/1753-6561-8-s2-s5 + type: paper + year: 2014 +- id: doi:10.1093/jac/dku299 + title: Does universal active MRSA surveillance influence anti-MRSA antibiotic use? + A retrospective analysis of the treatment of patients admitted with suspicion + of infection at Veterans Affairs Medical Centers between 2005 and 2010. authors: - - Roosan Islam - - Charlene R. Weir - Makoto Jones - - Guilherme Del Fiol - - Matthew H. Samore - publisher: BMC Medical Informatics and Decision Making - date: '2015-11-30' - link: https://doi.org/f72vh9 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.7326/M14-1933 - title: Variation in Outpatient Antibiotic Prescribing for Acute Respiratory Infections - in the Veteran Population - authors: - - Barbara Ellen Jones - - Brian Sauer - - Makoto M. Jones - - Jose Campo + - Benedikt Huttner + - Molly Leecaster + - Angela Huttner - Kavitha Damal - - Tao He - - Jian Ying - - Tom Greene + - Windy Tanner + - Christopher Nielson + - '**Michael A Rubin**' - Matthew Bidwell Goetz - - Melinda M. Neuhauser - - Lauri A. Hicks - - Matthew H. Samore - publisher: Annals of Internal Medicine - date: '2015-07-21' - link: https://doi.org/f7kkgj - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1086/677633 - title: 'Development of an Antibiotic Spectrum Score Based on Veterans Affairs Culture - and Susceptibility Data for the Purpose of Measuring Antibiotic De-Escalation: - A Modified Delphi Approach' - authors: - Karl Madaras-Kelly - - Makoto Jones - - Richard Remington - - Nicole Hill - - Benedikt Huttner - - Matthew Samore - publisher: Infection Control & Hospital Epidemiology - date: '2014-09-01' - link: https://doi.org/f6fjx4 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/JAC/DKU299 - title: Does universal active MRSA surveillance influence anti-MRSA antibiotic use? - A retrospective analysis of the treatment of patients admitted with suspicion - of infection at Veterans Affairs Medical Centers between 2005 and 2010 - authors: - - M. Jones - - B. Huttner - - M. Leecaster - - A. Huttner - - K. Damal - - W. Tanner - - C. Nielson - - M. A. Rubin - - M. B. Goetz - - K. Madaras-Kelly - - M. H. Samore - publisher: Journal of Antimicrobial Chemotherapy + - Matthew H Samore + publisher: The Journal of antimicrobial chemotherapy date: '2014-08-06' - link: https://doi.org/g75mbn - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000209838204116 - title: 'Going Big: Five Year Trends In Antibiotic Use For Hospitalized Pneumonia - Patients In National Va Data, 2006-2010' - authors: [] - publisher: AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000209838204116 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/CID/CIT668 - title: 'Relationships Between the Importation, Transmission, and Nosocomial Infections - of Methicillin-Resistant Staphylococcus aureus: An Observational Study of 112 - Veterans Affairs Medical Centers' - authors: - - M. Jones - - J. Ying - - B. Huttner - - M. Evans - - M. Maw - - C. Nielson - - M. A. Rubin - - T. Greene - - M. H. Samore - publisher: Clinical Infectious Diseases - date: '2013-10-02' - link: https://doi.org/f5m5s8 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: wosuid:WOS:000332404000004 - title: 'Vital Signs: Improving Antibiotic Use Among Hospitalized Patients' + link: https://doi.org/10.1093/jac/dku299 + type: paper + year: 2014 +- id: doi:10.1038/nmeth.3033 + title: Sets and intersections + authors: + - '**Alexander Lex**' + - Nils Gehlenborg + publisher: Nature Methods + date: '2014-08-01' + link: http://dx.doi.org/10.1038/nmeth.3033 + type: paper + year: 2014 +- id: doi:10.1016/j.ijmedinf.2014.07.005 + title: A systematic review of predictive modeling for bronchiolitis. + authors: + - Gang Luo + - Flory L Nkoy + - '**Per H Gesteland**' + - Tiffany S Glasgow + - Bryan L Stone + publisher: International journal of medical informatics + date: '2014-07-24' + link: https://doi.org/10.1016/j.ijmedinf.2014.07.005 + type: paper + year: 2014 +- id: doi:10.1017/s1049023x1400065x + title: Hospital preparedness in advance of the 2014 FIFA World Cup in Brazil. + authors: + - '**Kimberley Shoaf**' + - Claudia G S Osorio de Castro + - Elaine Silva Miranda + publisher: Prehospital and disaster medicine + date: '2014-07-09' + link: https://doi.org/10.1017/s1049023x1400065x + type: paper + year: 2014 +- id: doi:10.1097/ede.0000000000000119 + title: 'Hospital-acquired Clostridium difficile infections: estimating all-cause + mortality and length of stay.' + authors: + - '**Lofgren ET**' + - Cole SR + - Weber DJ + - Anderson DJ + - Moehring RW + publisher: Epidemiology (Cambridge, Mass.) + date: '2014-07-01' + link: https://doi.org/10.1097/ede.0000000000000119 + type: paper + year: 2014 +- id: doi:10.1109/mcg.2014.21 + title: A flexible pinhole camera model for coherent nonuniform sampling. + authors: + - Popescu V + - Benes B + - '**Rosen P**' + - Cui J + - Wang L + publisher: IEEE computer graphics and applications + date: '2014-07-01' + link: https://doi.org/10.1109/mcg.2014.21 + type: paper + year: 2014 +- id: doi:10.3390/vaccines2020397 + title: Identifying the Conditions Under Which Antibodies Protect Against Infection + by Equine Infectious Anemia Virus. + authors: + - '**Schwartz EJ**' + - Smith RJ + publisher: Vaccines + date: '2014-05-27' + link: https://doi.org/10.3390/vaccines2020397 + type: paper + year: 2014 +- id: doi:10.1145/2556288.2557032 + title: 'Show Me the Invisible: Visualizing Hidden Content.' + authors: + - Geymayer T + - Steinberger M + - '**Lex A**' + - Streit M + - Schmalstieg D + publisher: Proceedings of the SIGCHI conference on human factors in computing systems. + CHI Conference + date: '2014-04-26' + link: https://doi.org/10.1145/2556288.2557032 + type: paper + year: 2014 +- id: doi:10.1007/s11538-014-9950-x + title: Analytic calculation of finite-population reproductive numbers for direct- + and vector-transmitted diseases with homogeneous mixing. + authors: + - '**Keegan L**' + - Dushoff J + publisher: Bulletin of mathematical biology + date: '2014-04-23' + link: https://doi.org/10.1007/s11538-014-9950-x + type: paper + year: 2014 +- id: doi:10.1080/16078055.2014.903726 + title: 'The Dynamic Association between Healthy Leisure and Substance Use in South + African Adolescents: A State and Trait Perspective.' + authors: + - '**Weybright EH**' + - Caldwell LL + - Ram N + - Smith E + - Jacobs J + publisher: World leisure journal + date: '2014-04-01' + link: https://doi.org/10.1080/16078055.2014.903726 + type: paper + year: 2014 +- id: doi:10.1111/ddi.12160 + title: Incorporating model complexity and spatial sampling bias into ecological + niche models of climate change risks faced by 90 California vertebrate species + of concern + authors: + - Dan L. Warren + - Amber N. Wright + - '**Stephanie N. Seifert**' + - H. Bradley Shaffer + publisher: Diversity and Distributions + date: '2014-03-01' + link: http://dx.doi.org/10.1111/ddi.12160 + type: paper + year: 2014 +- id: doi:10.1109/mcg.2014.1 + title: Characterizing cancer subtypes using dual analysis in Caleydo StratomeX. + authors: + - Turkay C + - '**Lex A**' + - Streit M + - Pfister H + - Hauser H + publisher: IEEE computer graphics and applications + date: '2014-03-01' + link: https://doi.org/10.1109/mcg.2014.1 + type: paper + year: 2014 +- id: doi:10.1109/pacificvis.2014.17 + title: 2D vector field simplification based on robustness + authors: + - Primoz Skraba + - Bei Wang + - Guoning Chen + - '**Paul Rosen**' + publisher: IEEE Pacific Visualization Symposium + date: '2014-03-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84899504099&partnerID=MN8TOARS + type: paper + year: 2014 +- id: doi:10.1080/01490400.2014.860789 + title: Was Bob Seger Right? Relation Between Boredom in Leisure and [Risky] Sex. + authors: + - Miller JA + - Caldwell LL + - '**Weybright EH**' + - Smith EA + - Vergnani T + - Wegner L + publisher: Leisure sciences + date: '2014-01-01' + link: https://doi.org/10.1080/01490400.2014.860789 + type: paper + year: 2014 +- id: doi:10.3233/978-1-61499-423-7-149 + title: Recognizing Questions and Answers in EMR Templates Using Natural Language + Processing. + authors: + - Divita G + - Shen S + - Carter ME + - '**Redd A**' + - Forbush T + - Palmer M + - Samore MH + - Gundlapalli AV + publisher: Studies in health technology and informatics + date: '2014-01-01' + link: https://doi.org/10.3233/978-1-61499-423-7-149 + type: paper + year: 2014 +- id: doi:10.1016/j.cam.2013.07.005 + title: Geometric constraints on quadratic Bézier curves using minimal length and + energy + authors: + - Young Joon Ahn + - Christoph Hoffmann + - '**Paul Rosen**' + publisher: Journal of Computational and Applied Mathematics + date: '2014-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84881531541&partnerID=MN8TOARS + type: paper + year: 2014 +- id: insightnet:33346973202655125417 + title: Extracting Concepts Related to Homelessness from the Free Text of VA Electronic + Medical Records authors: [] - publisher: MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT - date: '2026-04-02' - link: https://www.webofscience.com/wos/woscc/full-record/WOS:WOS:000332404000004 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1371/JOURNAL.PONE.0080671 - title: A Simulation-Based Assessment of Strategies to Control Clostridium Difficile - Transmission and Infection - authors: - - Michael A. Rubin + publisher: AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium + date: '2014-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84964313857&partnerID=MN8TOARS + type: paper + year: 2014 +- id: doi:10.3233/978-1-61499-423-7-265 + title: Exploring patterns in resource utilization prior to the formal identification + of homelessness in recently returned Veterans + authors: + - Gundlapalli Adi V. + - '**Redd Andrew**' + - Carter Marjorie E. + - Palmer Miland + - Peterson Rachel + - Samore Matthew H. + publisher: Studies in Health Technology and Informatics + date: '2014-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84904181361&partnerID=MN8TOARS + type: paper + year: 2014 +- id: doi:10.3233/978-1-61499-423-7-153 + title: Detecting earlier indicators of homelessness in the free text of medical + records. + authors: + - '**Redd A**' + - Carter M + - Divita G + - Shen S + - Palmer M + - Samore M + - Gundlapalli AV + publisher: Studies in health technology and informatics + date: '2014-01-01' + link: https://doi.org/10.3233/978-1-61499-423-7-153 + type: paper + year: 2014 +- id: doi:10.1086/674394 + title: A mathematical model to evaluate the routine use of fecal microbiota transplantation + to prevent incident and recurrent Clostridium difficile infection. + authors: + - '**Lofgren ET**' + - Moehring RW + - Anderson DJ + - Weber DJ + - Fefferman NH + publisher: Infection control and hospital epidemiology + date: '2013-12-02' + link: https://doi.org/10.1086/674394 + type: paper + year: 2013 +- id: doi:10.1109/tvcg.2013.173 + title: 'LineUp: visual analysis of multi-attribute rankings.' + authors: + - Gratzl S + - '**Lex A**' + - Gehlenborg N + - Pfister H + - Streit M + publisher: IEEE transactions on visualization and computer graphics + date: '2013-12-01' + link: https://doi.org/10.1109/tvcg.2013.173 + type: paper + year: 2013 +- id: doi:10.1142/s0218339013400056 + title: Individual-based computational model used to explain 2009 pandemic H1N1 in + rural campus community + authors: + - LYDIA MILLER + - THERESE JONES + - MINDY MORGAN + - SERGEY LAPIN + - '**ELISSA J. SCHWARTZ**' + publisher: Journal of Biological Systems + date: '2013-12-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84893422418&partnerID=MN8TOARS + type: paper + year: 2013 +- id: doi:10.1109/tvcg.2013.154 + title: 'Entourage: visualizing relationships between biological pathways using contextual + subsets.' + authors: + - '**Lex A**' + - Partl C + - Kalkofen D + - Streit M + - Gratzl S + - Wassermann AM + - Schmalstieg D + - Pfister H + publisher: IEEE transactions on visualization and computer graphics + date: '2013-12-01' + link: https://doi.org/10.1109/tvcg.2013.154 + type: paper + year: 2013 +- id: doi:10.1371/journal.pone.0080671 + title: A simulation-based assessment of strategies to control Clostridium difficile + transmission and infection. + authors: + - '**Michael A Rubin**' - Makoto Jones - Molly Leecaster - - Karim Khader + - '**Karim Khader**' - Willy Ray - Angela Huttner - Benedikt Huttner - - Damon Toth + - '**Damon Toth**' - Theodore Sablay - - Robert J. Borotkanics - - Dale N. Gerding - - Matthew H. Samore - publisher: PLoS ONE + - Robert J Borotkanics + - Dale N Gerding + - Matthew H Samore + publisher: PloS one date: '2013-11-21' - link: https://doi.org/ggsmnm - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/JAC/DKT171 - title: Antibiotic prescription practices for pneumonia, skin and soft tissue infections - and urinary tract infections throughout the US Veterans Affairs system + link: https://doi.org/10.1371/journal.pone.0080671 + type: paper + year: 2013 +- id: doi:10.1016/j.jtbi.2013.11.003 + title: Understanding virus-host dynamics following EIAV infection in SCID horses. authors: - - Benedikt Huttner - - Makoto Jones - - Angela Huttner - - Michael Rubin - - Matthew H. Samore - publisher: Journal of Antimicrobial Chemotherapy - date: '2013-05-16' - link: https://doi.org/gbd52d - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1086/670640 - title: 'Unnecessary Antimicrobial Use in the Context of Clostridium difficile - Infection: A Call to Arms for the Veterans Affairs Antimicrobial Stewardship Task - Force' + - Ciupe SM + - '**Schwartz EJ**' + publisher: Journal of theoretical biology + date: '2013-11-16' + link: https://doi.org/10.1016/j.jtbi.2013.11.003 + type: paper + year: 2013 +- id: doi:10.1186/1471-2105-14-s19-s3 + title: 'enRoute: dynamic path extraction from biological pathway maps for exploring + heterogeneous experimental datasets.' authors: - - Christopher J. Graber - - Karl Madaras-Kelly - - Makoto M. Jones - - Melinda M. Neuhauser - - Matthew Bidwell Goetz - publisher: Infection Control & Hospital Epidemiology - date: '2013-06-01' - link: https://doi.org/hbz8cw - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1007/S40121-012-0001-3 - title: Decolonization with Mupirocin and Subsequent Risk of Methicillin-Resistant - Staphylococcus aureus Carriage in Veterans Affairs Hospitals + - Partl C + - '**Lex A**' + - Streit M + - Kalkofen D + - Kashofer K + - Schmalstieg D + publisher: BMC bioinformatics + date: '2013-11-12' + link: https://doi.org/10.1186/1471-2105-14-s19-s3 + type: paper + year: 2013 +- id: doi:10.32614/cran.package.abcoptim + title: 'ABCoptim: Implementation of Artificial Bee Colony (ABC) Optimization' authors: - - Richard E. Nelson - - Makoto Jones - - Michael A. Rubin - publisher: Infectious Diseases and Therapy - date: '2012-07-07' - link: https://doi.org/hbz8cx - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1093/JAC/DKS074 - title: 'Double trouble: how big a problem is redundant anaerobic antibiotic coverage - in Veterans Affairs medical centres?' - authors: - - B. Huttner - - M. Jones - - M. A. Rubin - - K. Madaras-Kelly - - C. Nielson - - M. B. Goetz - - M. M. Neuhauser - - M. H. Samore - publisher: Journal of Antimicrobial Chemotherapy - date: '2012-03-07' - link: https://doi.org/f3zbks - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1371/JOURNAL.PONE.0036649 - title: "Drugs of Last Resort? The Use of Polymyxins and Tigecycline at US Veterans\ - \ Affairs Medical Centers, 2005\u20132010" + - '**George Vega Yon**' + publisher: 'CRAN: Contributed Packages' + date: '2013-11-05' + link: http://dx.doi.org/10.32614/cran.package.abcoptim + type: paper + year: 2013 +- id: doi:10.1136/amiajnl-2013-001946 + title: Validating a strategy for psychosocial phenotyping using a large corpus of + clinical text. authors: - - Benedikt Huttner - - Makoto Jones - - Michael A. Rubin - - Melinda M. Neuhauser - - Adi Gundlapalli - - Matthew Samore - publisher: PLoS ONE - date: '2012-05-16' - link: https://doi.org/hbz8cz - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/1472-6947-12-34 - title: "Identification of methicillin-resistant Staphylococcus aureus within the\ - \ Nation\u2019s Veterans Affairs Medical Centers using natural language processing" + - Gundlapalli AV + - '**Redd A**' + - Carter M + - Divita G + - Shen S + - Palmer M + - Samore MH + publisher: 'Journal of the American Medical Informatics Association : JAMIA' + date: '2013-10-29' + link: https://doi.org/10.1136/amiajnl-2013-001946 + type: paper + year: 2013 +- id: doi:10.1093/imammb/dqt021 + title: Efficient parameter estimation for models of healthcare-associated pathogen + transmission in discrete and continuous time. authors: - - Makoto Jones - - Scott L DuVall - - Joshua Spuhl - - Matthew H Samore - - Christopher Nielson - - Michael Rubin - publisher: BMC Medical Informatics and Decision Making - date: '2012-04-25' - link: https://doi.org/gbbdf6 - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.AJIC.2011.06.001 - title: 'Long-term care facilities in Utah: A description of human and information - technology resources applied to infection control practice' + - Thomas A + - '**Redd A**' + - '**Khader K**' + - Leecaster M + - Greene T + - Samore M + publisher: 'Mathematical medicine and biology : a journal of the IMA' + date: '2013-10-10' + link: https://doi.org/10.1093/imammb/dqt021 + type: paper + year: 2013 +- id: doi:10.1186/1471-2334-13-428 + title: Population-level effects of clinical immunity to malaria. authors: - - Makoto Jones - - Matthew H. Samore - - Marjorie Carter - - Michael A. Rubin - publisher: American Journal of Infection Control - date: '2012-06-01' - link: https://doi.org/fjf8vw - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1086/664767 - title: 'Parenteral to Oral Conversion of Fluoroquinolones: Low-Hanging Fruit for - Antimicrobial Stewardship Programs?' + - '**Keegan LT**' + - Dushoff J + publisher: BMC infectious diseases + date: '2013-09-11' + link: https://doi.org/10.1186/1471-2334-13-428 + type: paper + year: 2013 +- id: doi:10.1080/03601277.2013.768067 + title: A Pilot Study of an Intervention Designed to Promote Walking, Balance, and + Self-Efficacy in Older Adults with Fear of Falling authors: - - Makoto Jones - - Benedikt Huttner - - Karl Madaras-Kelly - - Kevin Nechodom - - Christopher Nielson - - Matthew Bidwell Goetz - - Melinda M. Neuhauser - - Matthew H. Samore - - Michael A. Rubin - publisher: Infection Control & Hospital Epidemiology - date: '2012-04-01' - link: https://doi.org/gd59kv - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/1471-2105-10-S9-S12 - title: Developing a manually annotated clinical document corpus to identify phenotypic - information for inflammatory bowel disease - authors: - - Brett R South - - Shuying Shen - - Makoto Jones - - Jennifer Garvin - - Matthew H Samore - - Wendy W Chapman + - John Dattilo + - Lynn Martire + - Jinger Gottschall + - '**Elizabeth Weybright**' + publisher: Educational Gerontology + date: '2013-09-06' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84887139838&partnerID=MN8TOARS + type: paper + year: 2013 +- id: doi:10.1086/673144 + title: Impact of change to molecular testing for Clostridium difficile infection + on healthcare facility-associated incidence rates. + authors: + - Moehring RW + - '**Lofgren ET**' + - Anderson DJ + publisher: Infection control and hospital epidemiology + date: '2013-08-29' + link: https://doi.org/10.1086/673144 + type: paper + year: 2013 +- id: doi:10.1371/journal.ppat.1003555 + title: Quantitative models of the dose-response and time course of inhalational + anthrax in humans. + authors: + - '**Damon J A Toth**' - Adi V Gundlapalli - publisher: BMC Bioinformatics - date: '2009-09-01' - link: https://doi.org/bd4dmm - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/J.HEALUN.2008.11.005 - title: 'Tuberculosis in a Solid-organ Transplant Recipient: Modern-day Implications' - authors: - - Ayad Jazrawi - - Makoto Jones - - Abdallah G. Kfoury - - Patrick W. Fisher - - Edward M. Gilbert - - Feras Bader - - David Pombo - - Kim E. Hanson - - Josef Stehlik - publisher: The Journal of Heart and Lung Transplantation - date: '2009-02-01' - link: https://doi.org/b69hpz - orcid: 0000-0001-5580-6739 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1007/s40615-025-02638-9 - title: Food Insecurity and Chronic Disease Among Native Hawaiians and Pacific Islanders - on the Continent During COVID-19 - authors: - - Marla Alohilani Tam-Hoy Barhoum - - Maddy Rantala - - Meghan Lindell - - Pearl McElfish - - Eric Lofgren - - Denise Dillard - - Erin Renee Morgan - publisher: Journal of Racial and Ethnic Health Disparities - date: '2025-09-27' - link: https://doi.org/g948xd - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1515/em-2024-0020 - title: Time-varying reproductive number estimation for practical application in - structured populations + - Wiley A Schell + - Kenneth Bulmahn + - Thomas E Walton + - Christopher W Woods + - Catherine Coghill + - Frank Gallegos + - Matthew H Samore + - Frederick R Adler + publisher: PLoS pathogens + date: '2013-08-15' + link: https://doi.org/10.1371/journal.ppat.1003555 + type: paper + year: 2013 +- id: doi:10.2146/ajhp130049 + title: Description of outbreaks of health-care-associated infections related to + compounding pharmacies, 2000-12. authors: - - Erin Clancey - - Eric T. Lofgren - publisher: Epidemiologic Methods - date: '2025-01-01' - link: https://doi.org/g9qkk8 - orcid: 0000-0003-2052-7240 - plugin: sources.py - file: sources.yaml + - Catherine Staes + - Jason Jacobs + - '**Jeanmarie Mayer**' + - Jill Allen + publisher: 'American journal of health-system pharmacy : AJHP : official journal + of the American Society of Health-System Pharmacists' + date: '2013-08-01' + link: https://doi.org/10.2146/ajhp130049 type: paper - group: featured - image: images/clancy_figure.png -- id: doi:10.1145/3698587.3701340 - title: A Multi-task Learning Approach for Predicting Spatio-temporal Patient Variables + year: 2013 +- id: doi:10.1093/imammb/dqt013 + title: Improved hidden Markov model for nosocomial infections. authors: - - Kaniz Fatema Madhobi - - Eric Lofgren - - Ananth Kalyanaraman - publisher: Proceedings of the 15th ACM International Conference on Bioinformatics, - Computational Biology and Health Informatics - date: '2024-11-22' - link: https://doi.org/g9qkk9 - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2024.03.30.587440 - title: '3D Printers in Hospitals: Bacterial Contamination of Common and Antimicrobial - 3D-Printed Material' + - '**Karim Khader**' + - Molly Leecaster + - Tom Greene + - Matthew Samore + - Alun Thomas + publisher: 'Mathematical medicine and biology : a journal of the IMA' + date: '2013-07-19' + link: https://doi.org/10.1093/imammb/dqt013 + type: paper + year: 2013 +- id: doi:10.1111/cgf.12109 + title: Visualizing robustness of critical points for 2D time-varying vector fields authors: - - Katelin C. Jackson - - Erin Clancey - - Douglas R. Call - - Eric Lofgren - publisher: openRxiv - date: '2024-03-31' - link: https://doi.org/g9qkmb - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2024.03.01.24303412 - title: 'Charting is Never Exciting: Measuring Physician Time Use in Medical Dramas' + - B. Wang + - '**P. Rosen**' + - P. Skraba + - H. Bhatia + - V. Pascucci + publisher: Computer Graphics Forum + date: '2013-06-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84879777953&partnerID=MN8TOARS + type: paper + year: 2013 +- id: doi:10.1111/cgf.12103 + title: A visual approach to investigating shared and global memory behavior of CUDA + kernels authors: - - Katelin C Jackson - - Kayla A Miller - - Samantha M Hill - - Stephanie S. Johnson - - Laila A. Reimanis - - Eric T Lofgren - publisher: openRxiv - date: '2024-03-07' - link: https://doi.org/g9qkmc - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2024.02.14.24302485 - title: "Healthcare Worker Staffing Ratios Affect Methicillin-Resistant\n \ - \ Staphylococcus aureus\n Acquisition" + - '**Paul Rosen**' + publisher: Computer Graphics Forum + date: '2013-06-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84879744833&partnerID=MN8TOARS + type: paper + year: 2013 +- id: doi:10.3109/15563650.2013.801981 + title: Inefficiencies and vulnerabilities of telephone-based communication between + U. S. poison control centers and emergency departments. authors: - - Stephanie Sikavitsas Johnson - - Matthew Steven Mietchen - - Eric Thomas Lofgren - publisher: openRxiv - date: '2024-02-15' - link: https://doi.org/g9qkmd - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2024.02.08.24302489 - title: Impact of Shifting University Policies During the COVID-19 Pandemic on Self-Reported - Employee Social Networks + - Mollie R Cummins + - Barbara Crouch + - '**Per Gesteland**' + - Anastasia Wyckoff + - Todd Allen + - Anusha Muthukutty + - Robin Palmer + - Jitsupa Peelay + - Katherine Repko + publisher: Clinical toxicology (Philadelphia, Pa.) + date: '2013-05-23' + link: https://doi.org/10.3109/15563650.2013.801981 + type: paper + year: 2013 +- id: doi:10.4269/ajtmh.12-0488 + title: Reduction of Aedes aegypti vector competence for dengue virus under large + temperature fluctuations. authors: - - Stephanie S. Johnson - - Katelin C. Jackson - - Eric T. Lofgren - publisher: openRxiv - date: '2024-02-08' - link: https://doi.org/g9qkmf - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2024.01.10.24301116 - title: 'Unexpected Transmission Dynamics in a University Town: Lessons from COVID-19' + - Carrington LB + - '**Seifert SN**' + - Armijos MV + - Lambrechts L + - Scott TW + publisher: The American journal of tropical medicine and hygiene + date: '2013-02-25' + link: https://doi.org/10.4269/ajtmh.12-0488 + type: paper + year: 2013 +- id: doi:10.1007/s00607-013-0285-5 + title: A multiscale approach to network event identification using geolocated twitter + data authors: - - Erin Clancey - - Matthew S. Mietchen - - Corrin McMichael - - Eric T. Lofgren - publisher: openRxiv - date: '2024-01-11' - link: https://doi.org/gtszw3 - orcid: 0000-0003-2052-7240 - plugin: sources.py - file: sources.yaml + - Chao Yang + - Ian Jensen + - '**Paul Rosen**' + publisher: Computing + date: '2013-01-30' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84893654099&partnerID=MN8TOARS type: paper - group: featured - image: images/college_transmission.png -- id: doi:10.1017/ice.2022.174 - title: Estimate of undetected severe acute respiratory coronavirus virus 2 (SARS-CoV-2) - infection in acute-care hospital settings using an individual-based microsimulation - model + year: 2013 +- id: insightnet:ab1ba43e96d6a77c205f + title: Using natural language processing on the free text of clinical documents + to screen for evidence of homelessness among US veterans. + authors: [] + publisher: AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium + date: '2013-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84901284941&partnerID=MN8TOARS + type: paper + year: 2013 +- id: insightnet:ced9c1ebec678721f433 + title: Uncertainty visualization in forward and inverse cardiac models + authors: [] + publisher: Computing in Cardiology + date: '2013-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84894156745&partnerID=MN8TOARS + type: paper + year: 2013 +- id: doi:10.1603/me11242 + title: 'Large diurnal temperature fluctuations negatively influence Aedes aegypti + (Diptera: Culicidae) life-history traits.' authors: - - Kasey Jones - - Emily Hadley - - Sandy Preiss - - Eric T. Lofgren - - Donald P. Rice - - Marie C. D. Stoner - - Sarah Rhea - - "Jo\xEBlla W. Adams" - publisher: Infection Control & Hospital Epidemiology - date: '2022-09-01' - link: https://doi.org/g9qkmg - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.3390/v14081672 - title: Sequence Similarity Network Analysis Provides Insight into the Temporal and - Geographical Distribution of Mutations in SARS-CoV-2 Spike Protein + - Carrington LB + - '**Seifert SN**' + - Willits NH + - Lambrechts L + - Scott TW + publisher: Journal of medical entomology + date: '2013-01-01' + link: https://doi.org/10.1603/me11242 + type: paper + year: 2013 +- id: insightnet:d51b348f90cdb35da129 + title: Exploration of ICD-9-CM coding of chronic disease within the Elixhauser Comorbidity + Measure in patients with chronic heart failure. + authors: [] + publisher: Perspectives in health information management / AHIMA, American Health + Information Management Association + date: '2013-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84896589414&partnerID=MN8TOARS + type: paper + year: 2013 +- id: insightnet:45574b73116109bb1e03 + title: 'Erratum: Computational model of HIV-1 escape from the cytotoxic T lymphocyte + response (Canadian Applied Mathematics Quarterly (2013) 21:2 (216-279))' + authors: [] + publisher: Canadian Applied Mathematics Quarterly + date: '2013-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84960961872&partnerID=MN8TOARS + type: paper + year: 2013 +- id: insightnet:38e426e61f4a39f7ef17 + title: Computational model of HIV-1 escape from the cytotoxic T lymphocyte response + authors: [] + publisher: Canadian Applied Mathematics Quarterly + date: '2013-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84929738995&partnerID=MN8TOARS + type: paper + year: 2013 +- id: doi:10.1016/j.comgeo.2010.06.005 + title: A generalized Malfatti problem authors: - - Shruti S. Patil - - Helen N. Catanese - - Kelly A. Brayton - - Eric T. Lofgren - - Assefaw H. Gebremedhin - publisher: Viruses - date: '2022-07-29' - link: https://doi.org/g9qkmh - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1371/journal.pcbi.1010352 - title: Examining the impact of ICU population interaction structure on modeled colonization - dynamics of Staphylococcus aureus - authors: - - Matthew S. Mietchen - - Christopher T. Short - - Matthew Samore - - Eric T. Lofgren - publisher: PLOS Computational Biology - date: '2022-07-25' - link: https://doi.org/g9qkmj - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2022.03.01.22271660 - title: "Examining the Impact of ICU Population Interaction Structure on Modeled\ - \ Colonization Dynamics of\n Staphylococcus aureus" + - Ching-Shoei Chiang + - Christoph M. Hoffmann + - '**Paul Rosen**' + publisher: 'Computational Geometry: Theory and Applications' + date: '2012-10-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84861347254&partnerID=MN8TOARS + type: paper + year: 2012 +- id: doi:10.1097/ede.0b013e318258369b + title: 'Visualizing results from infection transmission models: a case against "confidence + intervals".' authors: - - Matthew S. Mietchen - - Christopher T. Short - - Matthew Samore - - Eric T. Lofgren - publisher: openRxiv - date: '2022-03-03' - link: https://doi.org/g9qkmk - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1101/2022.02.22.22271374 - title: Who Is Hospitalized With Whom? Inpatient Contact Networks and Mixing Patterns + - '**Lofgren ET**' + publisher: Epidemiology (Cambridge, Mass.) + date: '2012-09-01' + link: https://doi.org/10.1097/ede.0b013e318258369b + type: paper + year: 2012 +- id: doi:10.1631/jzus.c1200010 + title: Anote on circle packing authors: - - Kaniz Fatema Madhobi - - Ananth Kalyanaraman - - Deverick J. Anderson - - Elizabeth Dodds-Ashley - - Rebekah W. Moehring - - Eric T. Lofgren - publisher: openRxiv - date: '2022-02-24' - link: https://doi.org/g9qkmm - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1371/journal.pone.0260580 - title: Transient dynamics of infection transmission in a simulated intensive care - unit + - Young Joon Ahn + - Christoph M. Hoffmann + - '**Paul Rosen**' + publisher: 'Journal of Zhejiang University: Science C' + date: '2012-08-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84866483803&partnerID=MN8TOARS + type: paper + year: 2012 +- id: doi:10.1007/s40121-012-0001-3 + title: Decolonization with Mupirocin and Subsequent Risk of Methicillin-Resistant + Staphylococcus aureus Carriage in Veterans Affairs Hospitals. + authors: + - Nelson RE + - '**Jones M**' + - '**Rubin MA**' + publisher: Infectious diseases and therapy + date: '2012-07-07' + link: https://doi.org/10.1007/s40121-012-0001-3 + type: paper + year: 2012 +- id: doi:10.1109/igarss.2012.6352419 + title: Data management and analysis with WRF and SFIRE + authors: + - Jonathan D. Beezley + - Mavin Martin + - '**Paul Rosen**' + - Jan Mandel + - Adam K. Kochanski + publisher: International Geoscience and Remote Sensing Symposium (IGARSS) + date: '2012-07-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84873169730&partnerID=MN8TOARS + type: paper + year: 2012 +- id: doi:10.1093/jpids/pis055 + title: Clinical Value of an Ambulatory-Based Antibiogram for Uropathogens in Children. + authors: + - Kevin W Dahle + - Ernest K Korgenski + - Adam L Hersh + - Rajendu Srivastava + - '**Per Hans Gesteland**' + publisher: Journal of the Pediatric Infectious Diseases Society + date: '2012-06-29' + link: https://doi.org/10.1093/jpids/pis055 + type: paper + year: 2012 +- id: doi:10.1111/j.1467-8659.2012.03110.x + title: 'StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for + Cancer Subtype Characterization.' + authors: + - '**Lex A**' + - Streit M + - Schulz HJ + - Partl C + - Schmalstieg D + - Park PJ + - Gehlenborg N + publisher: 'Computer graphics forum : journal of the European Association for Computer + Graphics' + date: '2012-06-25' + link: https://doi.org/10.1111/j.1467-8659.2012.03110.x + type: paper + year: 2012 +- id: doi:10.32614/cran.package.rgexf + title: 'rgexf: Build, Import, and Export GEXF Graph Files' + authors: + - '**George Vega Yon**' + publisher: 'CRAN: Contributed Packages' + date: '2012-06-19' + link: http://dx.doi.org/10.32614/cran.package.rgexf + type: paper + year: 2012 +- id: doi:10.2987/11-6216r.1 + title: The knockdown resistance mutation and knockdown time in Anopheles gambiae + collected from Mali evaluated through a bottle bioassay and a novel insecticide-treated + net bioassay. + authors: + - Fryxell RT + - '**Seifert SN**' + - Lee Y + - Sacko A + - Lanzaro G + - Cornel A + publisher: Journal of the American Mosquito Control Association + date: '2012-06-01' + link: https://doi.org/10.2987/11-6216r.1 + type: paper + year: 2012 +- id: doi:10.1109/tvcg.2011.108 + title: Model-driven design for the visual analysis of heterogeneous data. + authors: + - Streit M + - Schulz HJ + - '**Lex A**' + - Schmalstieg D + - Schumann H + publisher: IEEE transactions on visualization and computer graphics + date: '2012-06-01' + link: https://doi.org/10.1109/tvcg.2011.108 + type: paper + year: 2012 +- id: doi:10.3109/15563650.2012.693183 + title: 'Electronic information exchange between emergency departments and poison + control centers: a Delphi study.' authors: - - Katelin C. Jackson - - Christopher T. Short - - Kellan R. Toman - - Matthew S. Mietchen - - Eric Lofgren - publisher: PLOS ONE - date: '2022-02-03' - link: https://doi.org/g9qkmn - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.3390/ijerph18168260 - title: Excess Risk of COVID-19 to University Populations Resulting from In-Person - Sporting Events + - Mollie R Cummins + - Barbara I Crouch + - '**Per Gesteland**' + - Nancy Staggers + - Anastasia Wyckoff + - Bob G Wong + publisher: Clinical toxicology (Philadelphia, Pa.) + date: '2012-05-22' + link: https://doi.org/10.3109/15563650.2012.693183 + type: paper + year: 2012 +- id: doi:10.1371/journal.pone.0036649 + title: Drugs of last resort? The use of polymyxins and tigecycline at US Veterans + Affairs medical centers, 2005-2010. authors: - - Stephanie S. Johnson - - Katelin C. Jackson - - Matthew S. Mietchen - - Samir Sbai - - Elissa J. Schwartz - - Eric T. Lofgren - publisher: International Journal of Environmental Research and Public Health - date: '2021-08-04' - link: https://doi.org/gtszwz - orcid: 0000-0003-2052-7240 - plugin: sources.py - file: sources.yaml + - Huttner B + - '**Jones M**' + - '**Rubin MA**' + - Neuhauser MM + - Gundlapalli A + - Samore M + publisher: PloS one + date: '2012-05-16' + link: https://doi.org/10.1371/journal.pone.0036649 type: paper - group: featured - image: images/sporting_sir.png -- id: doi:10.1101/2020.04.08.20058842 - title: The Epidemiological Implications of Jails for Community, Corrections Officer, - and Incarcerated Population Risks from COVID-19 + year: 2012 +- id: doi:10.1093/cid/cis410 + title: Agreement in classifying bloodstream infections among multiple reviewers + conducting surveillance. authors: - - Eric Lofgren - - Kristian Lum - - Aaron Horowitz - - Brooke Madubuonwu - - Kellen Myers - - Nina H. Fefferman - publisher: openRxiv - date: '2020-04-14' - link: https://doi.org/gtszwx - orcid: 0000-0003-2052-7240 - plugin: sources.py - file: sources.yaml + - '**Jeanmarie Mayer**' + - Tom Greene + - Janelle Howell + - Jian Ying + - '**Michael A Rubin**' + - William E Trick + - Matthew H Samore + - CDC Prevention Epicenters Program + publisher: 'Clinical infectious diseases : an official publication of the Infectious + Diseases Society of America' + date: '2012-04-26' + link: https://doi.org/10.1093/cid/cis410 type: paper - group: featured - image: images/Jail.png -- id: doi:10.1111/jam.14499 - title: Identifying predictors of antimicrobial exposure in hospitalized patients - using a machine learning approach + year: 2012 +- id: doi:10.1086/664767 + title: 'Parenteral to oral conversion of fluoroquinolones: low-hanging fruit for + antimicrobial stewardship programs?' authors: - - A.S. Chowdhury - - E.T. Lofgren - - R.W. Moehring - - S.L. Broschat - publisher: Journal of Applied Microbiology - date: '2019-11-12' - link: https://doi.org/g9qkmp - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.3390/ijerph17051500 - title: Assessing the Potential Impact of a Long-Acting Skin Disinfectant in the - Prevention of Methicillin-Resistant Staphylococcus aureus Transmission + - Makoto Jones + - Benedikt Huttner + - Karl Madaras-Kelly + - Kevin Nechodom + - Christopher Nielson + - Matthew Bidwell Goetz + - Melinda M Neuhauser + - Matthew H Samore + - '**Michael A Rubin**' + publisher: Infection control and hospital epidemiology + date: '2012-04-01' + link: https://doi.org/10.1086/664767 + type: paper + year: 2012 +- id: doi:10.1145/2159616.2159641 + title: Rectilinear texture warping for fast adaptive shadow mapping authors: - - Christopher T. Short - - Matthew S. Mietchen - - Eric T. Lofgren - publisher: International Journal of Environmental Research and Public Health - date: '2020-02-26' - link: https://doi.org/g9qkmq - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1186/s12879-017-2632-1 - title: 'Estimating the impact of post randomization changes in staff behavior in - infection prevention trials: a mathematical modeling approach' + - '**Paul Rosen**' + publisher: 'Proceedings - I3D 2012: ACM SIGGRAPH Symposium on Interactive 3D Graphics + and Games' + date: '2012-03-09' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84859824266&partnerID=MN8TOARS + type: paper + year: 2012 +- id: doi:10.1603/me11113 + title: Single-nucleotide polymorphisms for high-throughput genotyping of Anopheles + arabiensis in East and southern Africa. authors: - - Eric T. Lofgren - publisher: BMC Infectious Diseases - date: '2017-08-03' - link: https://doi.org/g9qkmr - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1086/674394 - title: A Mathematical Model to Evaluate the Routine Use of Fecal Microbiota Transplantation - to Prevent Incident and Recurrent Clostridium difficile Infection + - Lee Y + - '**Seifert SN**' + - Fornadel CM + - Norris DE + - Lanzaro GC + publisher: Journal of medical entomology + date: '2012-03-01' + link: https://doi.org/10.1603/me11113 + type: paper + year: 2012 +- id: doi:10.1603/me11108 + title: 'High degree of single nucleotide polymorphisms in California Culex pipiens + (Diptera: Culicidae) sensu lato.' authors: - - Eric T. Lofgren - - Rebekah W. Moehring - - Deverick J. Anderson - - David J. Weber - - Nina H. Fefferman - publisher: Infection Control & Hospital Epidemiology - date: '2014-01-01' - link: https://doi.org/f5ndnt - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1097/EDE.0000000000000119 - title: Hospital-Acquired Clostridium difficile Infections + - Lee Y + - '**Seifert SN**' + - Nieman CC + - McAbee RD + - Goodell P + - Fryxell RT + - Lanzaro GC + - Cornel AJ + publisher: Journal of medical entomology + date: '2012-03-01' + link: https://doi.org/10.1603/me11108 + type: paper + year: 2012 +- id: doi:10.1136/amiajnl-2011-000486 + title: 'The EpiCanvas infectious disease weather map: an interactive visual exploration + of temporal and spatial correlations.' authors: - - Eric T. Lofgren - - Stephen R. Cole - - David J. Weber - - Deverick J. Anderson - - Rebekah W. Moehring - publisher: Epidemiology - date: '2014-07-01' - link: https://doi.org/f56ndn - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1086/673144 - title: "Impact of Change to Molecular Testing for\n Clostridium\ - \ difficile\n Infection on Healthcare Facility\u2013Associated\ - \ Incidence Rates" + - '**Per Hans Gesteland**' + - Yarden Livnat + - Nathan Galli + - Matthew H Samore + - Adi V Gundlapalli + publisher: 'Journal of the American Medical Informatics Association : JAMIA' + date: '2012-02-22' + link: https://doi.org/10.1136/amiajnl-2011-000486 + type: paper + year: 2012 +- id: doi:10.1109/pacificvis.2012.6183557 + title: Topological analysis and visualization of cyclical behavior in memory reference + traces authors: - - Rebekah W. Moehring - - Eric T. Lofgren - - Deverick J. Anderson - publisher: Infection Control & Hospital Epidemiology - date: '2013-10-01' - link: https://doi.org/f49tsf - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1111/j.1750-2659.2011.00284.x - title: "Performance of rapid influenza H1N1 diagnostic tests: a meta\u2010analysis" + - A.N.M. Imroz Choudhury + - Bei Wang + - '**Paul Rosen**' + - Valerio Pascucci + publisher: IEEE Pacific Visualization Symposium 2012, PacificVis 2012 - Proceedings + date: '2012-02-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84860686773&partnerID=MN8TOARS + type: paper + year: 2012 +- id: doi:10.1117/12.908516 + title: Visualizing uncertainty in biological expression data authors: - - Haitao Chu - - Eric T. Lofgren - - M. Elizabeth Halloran - - Pei F. Kuan - - Michael Hudgens - - Stephen R. Cole - publisher: Influenza and Other Respiratory Viruses - date: '2011-08-31' - link: https://doi.org/fj95g7 - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1097/EDE.0b013e318258369b - title: Visualizing Results From Infection Transmission Models + - Clemens Holzhüter + - '**Alexander Lex**' + - Dieter Schmalstieg + - Hans-Jörg Schulz + - Heidrun Schumann + - Marc Streit + publisher: Visualization and Data Analysis 2012 + date: '2012-01-22' + link: http://dx.doi.org/10.1117/12.908516 + type: paper + year: 2012 +- id: insightnet:96cd3ee640a4b95e13eb + title: Visualization of Multidimensional Data with Applications in Molecular Biology + authors: [] + publisher: '' + date: '2012-01-01' + link: https://tugraz.elsevierpure.com/en/publications/5773855d-a28e-445f-b6ac-c6cea8194881 + type: paper + year: 2012 +- id: doi:10.1007/978-3-642-32677-6_15 + title: 'From Quantification to Visualization: A Taxonomy of Uncertainty Visualization + Approaches.' authors: - - Eric T. Lofgren - publisher: Epidemiology - date: '2012-09-01' - link: https://doi.org/f37jkz - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1111/j.1750-2659.2010.00137.x - title: "Disproportional effects in populations of concern for pandemic influenza:\ - \ insights from seasonal epidemics in Wisconsin, 1967\u20132004" + - Potter K + - '**Rosen P**' + - Johnson CR + publisher: IFIP advances in information and communication technology + date: '2012-01-01' + link: https://doi.org/10.1007/978-3-642-32677-6_15 + type: paper + year: 2012 +- id: doi:10.5210/ojphi.v3i3.3904 + title: 'Strengthening Partnerships along the Informatics Innovation Stages and Spaces: + Research and Practice Collaboration in Utah.' authors: - - Eric T. Lofgren - - Julia B. Wenger - - Nina H. Fefferman - - David Bina - - Steve Gradus - - Sanjib Bhattacharyya - - Yuri N. Naumov - - Jack Gorski - - Elena N. Naumova - publisher: Influenza and Other Respiratory Viruses - date: '2010-07-01' - link: https://doi.org/c786px - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/S1473-3099(07)70218-9 - title: Further interest in virtual game worlds + - Wu Xu + - Warren Pettey + - Yarden Livnat + - '**Per Gesteland**' + - Deepthi Rajeev + - Jonathan Reid + - Matthew Samore + - R Scott Evans + - Robert T Rolfs + - Catherine Staes + publisher: Online journal of public health informatics + date: '2011-12-22' + link: https://doi.org/10.5210/ojphi.v3i3.3904 + type: paper + year: 2011 +- id: doi:10.1109/tvcg.2011.250 + title: 'VisBricks: multiform visualization of large, inhomogeneous data.' authors: - - Eric T Lofgren - - Nina H Fefferman - publisher: The Lancet Infectious Diseases - date: '2007-10-01' - link: https://doi.org/b7mwgt - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1128/JVI.01680-06 - title: 'Influenza Seasonality: Underlying Causes and Modeling Theories' - authors: - - Eric Lofgren - - N. H. Fefferman - - Y. N. Naumov - - J. Gorski - - E. N. Naumova - publisher: Journal of Virology - date: '2007-06-01' - link: https://doi.org/cmc3cm - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: doi:10.1016/S1473-3099(07)70212-8 - title: The untapped potential of virtual game worlds to shed light on real world - epidemics + - '**Lex A**' + - Schulz HJ + - Streit M + - Partl C + - Schmalstieg D + publisher: IEEE transactions on visualization and computer graphics + date: '2011-12-01' + link: https://doi.org/10.1109/tvcg.2011.250 + type: paper + year: 2011 +- id: doi:10.1109/tvcg.2011.183 + title: Context-preserving visual links. authors: - - Eric T Lofgren - - Nina H Fefferman - publisher: The Lancet Infectious Diseases - date: '2007-09-01' - link: https://doi.org/d7dwmb - orcid: 0000-0003-2052-7240 - plugin: orcid.py - file: orcid.yaml -- id: pmid:34492025 - title: Comparison of antigen- and RT-PCR-based testing strategies for detection - of SARS-CoV-2 in two high-exposure settings. + - Steinberger M + - Waldner M + - Streit M + - '**Lex A**' + - Schmalstieg D + publisher: IEEE transactions on visualization and computer graphics + date: '2011-12-01' + link: https://doi.org/10.1109/tvcg.2011.183 + type: paper + year: 2011 +- id: doi:10.1109/mcg.2011.32 + title: Nonpinhole approximations for interactive rendering. authors: - - Jay Love - - Megan T Wimmer - - Damon J A Toth - - Arthi Chandran - - Dilip Makhija - - Charles K Cooper - - Matthew H Samore - - Lindsay T Keegan - publisher: PloS one - date: '2021-09-07' - link: https://www.ncbi.nlm.nih.gov/pubmed/34492025 + - '**Rosen P**' + - Popescu V + - Hayward K + - Wyman C + publisher: IEEE computer graphics and applications + date: '2011-11-01' + link: https://doi.org/10.1109/mcg.2011.32 type: paper - group: featured - image: images/Wimmer_Model.png - plugin: sources.py - file: sources.yaml -- id: pmid:33900179 - title: Coordinated Strategy for a Model-Based Decision Support Tool for Coronavirus - Disease, Utah, USA. + year: 2011 +- id: doi:10.1109/tvcg.2011.268 + title: Simplification of Node Position Data ;for Interactive Visualization of Dynamic + Data Sets. authors: - - Hannah R Meredith - - Emerson Arehart - - Kyra H Grantz - - Alexander Beams - - Theresa Sheets - - Richard Nelson - - Yue Zhang - - Russell G Vinik - - Darryl Barfuss - - Jacob C Pettit - - Keegan McCaffrey - - Angela C Dunn - - Michael Good - - Shannon Frattaroli - - Matthew H Samore - - Justin Lessler - - Elizabeth C Lee - - Lindsay T Keegan - publisher: Emerging infectious diseases - date: '2021-05-01' - link: https://www.ncbi.nlm.nih.gov/pubmed/33900179 + - '**Rosen P**' + - Popescu V + publisher: IEEE transactions on visualization and computer graphics + date: '2011-10-25' + link: https://doi.org/10.1109/tvcg.2011.268 type: paper - group: featured - image: images/ScenaroModelingUtah.png - plugin: sources.py - file: sources.yaml -- id: pmid:33824358 - title: A scenario modeling pipeline for COVID-19 emergency planning. + year: 2011 +- id: doi:10.1016/j.ajic.2011.06.001 + title: 'Long-term care facilities in Utah: a description of human and information + technology resources applied to infection control practice.' authors: - - Joseph C Lemaitre - - Kyra H Grantz - - Joshua Kaminsky - - Hannah R Meredith - - Shaun A Truelove - - Stephen A Lauer - - Lindsay T Keegan - - Sam Shah - - Josh Wills - - Kathryn Kaminsky - - Javier Perez-Saez - - Justin Lessler - - Elizabeth C Lee - publisher: Scientific reports - date: '2021-04-06' - link: https://www.ncbi.nlm.nih.gov/pubmed/33824358 + - '**Jones M**' + - Samore MH + - Carter M + - '**Rubin MA**' + publisher: American journal of infection control + date: '2011-09-10' + link: https://doi.org/10.1016/j.ajic.2011.06.001 type: paper - group: featured - image: images/ScenarioModel.png - plugin: sources.py - file: sources.yaml -- id: pmid:34506478 - title: The importance of non-pharmaceutical interventions during the COVID-19 vaccine - rollout. + year: 2011 +- id: doi:10.1109/vissof.2011.6069452 + title: Abstract visualization of runtime memory behavior authors: - - "Nicol\xF2 Gozzi" - - Paolo Bajardi - - Nicola Perra - publisher: PLoS computational biology - date: '2021-09-10' - link: https://www.ncbi.nlm.nih.gov/pubmed/34506478 + - A. N. M. Imroz Choudhury + - '**Paul Rosen**' + publisher: Proceedings of VISSOFT 2011 - 6th IEEE International Workshop on Visualizing + Software for Understanding and Analysis + date: '2011-09-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-82055207477&partnerID=MN8TOARS type: paper - group: featured - image: images/LTCF_NPI.png - plugin: sources.py - file: sources.yaml -- id: doi:10.1101/2023.05.10.23289580 - title: Characterizing spatiotemporal variation in transmission heterogeneity during - the 2022 mpox outbreak in the USA + year: 2011 +- id: doi:10.1111/j.1750-2659.2011.00284.x + title: 'Performance of rapid influenza H1N1 diagnostic tests: a meta-analysis.' authors: - - Jay Love - - Cormac R. LaPrete - - Theresa R. Sheets - - George G. Vega Yon - - Alun Thomas - - Matthew H. Samore - - Lindsay T. Keegan - - Frederick R. Adler - - Rachel B. Slayton - - Ian H. Spicknall - - Damon J.A. Toth - publisher: openRxiv - date: '2023-05-14' - link: https://doi.org/gtszww + - Chu H + - '**Lofgren ET**' + - Halloran ME + - Kuan PF + - Hudgens M + - Cole SR + publisher: Influenza and other respiratory viruses + date: '2011-08-30' + link: https://doi.org/10.1111/j.1750-2659.2011.00284.x type: paper - group: featured - image: images/mpox.png - plugin: sources.py - file: sources.yaml -- id: doi:10.1001/jamanetworkopen.2022.40142 - title: Revisiting the Question of Fan Attendance at Professional Sporting Events + year: 2011 +- id: doi:10.1109/iv.2011.52 + title: Visualizing the Effects of Logically Combined Filters authors: - - Stephanie S. Johnson - - Eric T. Lofgren - publisher: JAMA Network Open - date: '2022-11-18' - link: https://doi.org/gtszw2 + - Thomas Geymayer + - '**Alexander Lex**' + - Marc Streit + - Dieter Schmalstieg + publisher: 2011 15th International Conference on Information Visualisation + date: '2011-07-01' + link: http://dx.doi.org/10.1109/iv.2011.52 type: paper - group: featured - image: images/JAMA-network.png - plugin: sources.py - file: sources.yaml -- id: doi:10.1093/haschl/qxaf045 - title: 'Understanding macroeconomic indicators affected by COVID-19 containment - policies in the United States: a scoping review' + year: 2011 +- id: doi:10.1007/s00371-011-0599-2 + title: An Evaluation of 3-D Scene Exploration Using a Multiperspective Image Framework. authors: - - Jeong-Yeon Cho - - Tejashree Prakash - - Wayne Lam - - Nathan Seegert - - Matthew H Samore - - Andrew T Pavia - - Richard E Nelson - - Nathorn Chaiyakunapruk - publisher: Health Affairs Scholar - date: '2025-03-06' - link: https://doi.org/g9m7kf + - '**Rosen P**' + - Popescu V + publisher: The Visual computer + date: '2011-06-01' + link: https://doi.org/10.1007/s00371-011-0599-2 type: paper - group: featured - image: images/HAS.png - plugin: sources.py - file: sources.yaml -- id: doi:10.1001/jamanetworkopen.2025.22779 - title: Optimizing Timing for Respiratory Syncytial Virus Prevention Interventions - for Infants + year: 2011 +- id: doi:10.1186/1471-2334-11-105 + title: Modeling the variations in pediatric respiratory syncytial virus seasonal + epidemics. authors: - - Danielle Nguyen - - Haeseon Lee - - Andrew T. Pavia - - Richard E. Nelson + - Molly Leecaster + - '**Per Gesteland**' + - Tom Greene + - Nephi Walton + - Adi Gundlapalli + - Robert Rolfs + - Carrie Byington - Matthew Samore - - Nathorn Chaiyakunapruk - publisher: JAMA Network Open - date: '2025-07-23' - link: https://doi.org/hbf2rt + publisher: BMC infectious diseases + date: '2011-04-21' + link: https://doi.org/10.1186/1471-2334-11-105 type: paper - group: featured - image: images/RSV.png - plugin: sources.py - file: sources.yaml -- id: doi:10.3390/ijerph22081301 - title: 'Assessing Public Health Capacity for Infectious Disease Modeling: A Qualitative - Study of State and Local Agencies' + year: 2011 +- id: doi:10.1890/10-1171.1 + title: 'Ecological niche modeling in Maxent: the importance of model complexity + and the performance of model selection criteria.' authors: - - Skyler J. Crouch - - Katie S. Allen - - Delaney Thornton - - Joel Hartsell - - Elizabeth H. Weybright - - Julia E. Szymczak - - Kimberley I. Shoaf - publisher: International Journal of Environmental Research and Public Health - date: '2025-08-20' - link: https://doi.org/g9xs9m + - Warren DL + - '**Seifert SN**' + publisher: 'Ecological applications : a publication of the Ecological Society of + America' + date: '2011-03-01' + link: https://doi.org/10.1890/10-1171.1 type: paper - group: featured - image: images/ijerph.png - plugin: sources.py - file: sources.yaml -- id: doi:10.1371/journal.pone.0308244 - title: What drives the effectiveness of social distancing in combating COVID-19 - across U.S. states? + year: 2011 +- id: doi:10.1007/s11222-010-9221-0 + title: A comment on the orthogonalization of B-spline basis functions and their + derivatives authors: - - Mu-Jeung Yang - - Maclean Gaulin - - Nathan Seegert - - Yang Fan - publisher: PLOS One - date: '2025-05-12' - link: https://doi.org/g9qxmx + - '**Andrew Redd**' + publisher: Statistics and Computing + date: '2011-01-04' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-81955161290&partnerID=MN8TOARS type: paper - group: featured - image: images/NSfigure.png - plugin: sources.py - file: sources.yaml -- id: doi:10.1371/journal.pcbi.1013577 - title: Transmission thresholds for the spread of infections in healthcare facilities + year: 2011 +- id: insightnet:03efe0cd90bb65df9909 + title: 'Socio-economic status and HIV/AIDS dynamics: A modeling approach' + authors: [] + publisher: World Journal of Modelling and Simulation + date: '2011-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84857591296&partnerID=MN8TOARS + type: paper + year: 2011 +- id: doi:10.1097/phh.0b013e3181ee9b29 + title: Public health communication with frontline clinicians during the first wave + of the 2009 influenza pandemic. authors: - - Damon J. A. Toth - - Karim Khader - - Christopher Mitchell - - Matthew H. Samore - publisher: PLOS Computational Biology - date: '2025-10-15' - link: https://doi.org/hbf2rv + - Catherine J Staes + - Amyanne Wuthrich + - '**Per Gesteland**' + - Mandy A Allison + - Molly Leecaster + - Julie H Shakib + - Marjorie E Carter + - Brittany M Mallin + - Susan Mottice + - Robert Rolfs + - Andrew T Pavia + - Brent Wallace + - Adi V Gundlapalli + - Matthew Samore + - Carrie L Byington + publisher: 'Journal of public health management and practice : JPHMP' + date: '2011-01-01' + link: https://doi.org/10.1097/phh.0b013e3181ee9b29 type: paper - group: featured - image: images/plos.png - plugin: sources.py - file: sources.yaml + year: 2011 +- id: doi:10.1007/978-3-642-24031-7_24 + title: Experiences in disseminating educational visualizations + authors: + - Nathan Andrysco + - '**Paul Rosen**' + - Voicu Popescu + - Bedřich Beneš + - Kevin Robert Gurney + publisher: Lecture Notes in Computer Science (including subseries Lecture Notes + in Artificial Intelligence and Lecture Notes in Bioinformatics) + date: '2011-01-01' + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-80053375705&partnerID=MN8TOARS + type: paper + year: 2011 +- id: doi:10.5055/ajdm.0518 + title: Residual biological surrogate aerosol risk reduction during disrobing litter-bound + manikin patients using two dry air treatments for cold regions. + authors: + - Clayton Garner + - Darrah Sleeth + - Jeremy Slagley + - '**Kimberley Shoaf**' + - Vera Peters + - Faina Feldman + - Julie Skipper + - Gaiven Varshney + - Douglas Lewis + publisher: American journal of disaster medicine + date: '' + link: https://doi.org/10.5055/ajdm.0518 + type: paper + year: 0 diff --git a/_data/orcid.yaml b/_data/orcid.yaml deleted file mode 100644 index d6917ddb..00000000 --- a/_data/orcid.yaml +++ /dev/null @@ -1,5 +0,0 @@ -- orcid: 0000-0002-8526-3007 -- orcid: 0000-0002-4862-9196 -- orcid: 0000-0002-2900-5548 -- orcid: 0000-0001-5580-6739 -- orcid: 0000-0003-2052-7240 diff --git a/_data/types.yaml b/_data/types.yaml index c91f11d6..647f175f 100644 --- a/_data/types.yaml +++ b/_data/types.yaml @@ -20,7 +20,7 @@ phd: econ: icon: fa-solid fa-money-bill-trend-up - description: + description: Economic Impact Analysis undergrad: icon: fa-solid fa-user-graduate @@ -40,23 +40,35 @@ member: mod: icon: fa-solid fa-chart-line - description: + description: Analytical Modeling stedi: icon: fa-solid fa-user-group - description: + description: Sociotechnical System Evaluation, Design & Implementation pm: icon: fa-solid fa-check-square - description: + description: Project Management sme: icon: fa-solid fa-disease - description: + description: Subject Matter Expert, Responding to Disease Emergencies comp: icon: fa-solid fa-desktop - description: + description: Computational & Visual Analytics + +state: + icon: fa-solid fa-landmark + description: State Public Health Partner + +local: + icon: fa-solid fa-city + description: Local Public Health Partner + +hcs: + icon: fa-solid fa-hospital + description: Healthcare System Partner # general @@ -152,6 +164,12 @@ linkedin: tooltip: LinkedIn link: https://www.linkedin.com/in/$VALUE +bluesky: + icon: fa-brands fa-bluesky + text: Bluesky + tooltip: Bluesky + link: $VALUE + # alerts tip: diff --git a/_includes/fonts.html b/_includes/fonts.html index 153709b2..016f1c61 100644 --- a/_includes/fonts.html +++ b/_includes/fonts.html @@ -5,7 +5,7 @@ -{% assign fontawesome = "https://use.fontawesome.com/releases/v6.5.0/css/all.css" %} +{% assign fontawesome = "https://use.fontawesome.com/releases/v6.7.2/css/all.css" %} - +
{% for link in site.links %} diff --git a/_includes/meta.html b/_includes/meta.html index 1336e305..efe1a3ae 100644 --- a/_includes/meta.html +++ b/_includes/meta.html @@ -46,6 +46,7 @@ {{ fulltitle }} + diff --git a/_members/Alex-Lex.md b/_members/Alex-Lex.md index a6daa008..029ad418 100644 --- a/_members/Alex-Lex.md +++ b/_members/Alex-Lex.md @@ -2,6 +2,11 @@ name: Alexander Lex image: images/Alexander_Lex.jpg role: comp +links: + orcid: 0000-0001-6930-5468 + google-scholar: JFNLCUcAAAAJ + bluesky: https://bsky.app/profile/alex-lex.bsky.social + home-page: https://alexander-lex.net/ --- Alexander Lex is an Associate Professor of Computer Science at the Scientific Computing and Imaging Institute and the Kahlert School of Computing at the University of Utah. He directs the Visualization Design Lab where he develops visualization methods and systems to help solve today’s scientific problems. In ForeSITE, Alex will contribute to all aspects related to presenting and communicating data and will advise on UI/UX issues. diff --git a/_members/Andrew_Redd.md b/_members/Andrew_Redd.md index 663c7979..8b9f0cf1 100644 --- a/_members/Andrew_Redd.md +++ b/_members/Andrew_Redd.md @@ -2,6 +2,10 @@ name: Andrew Redd image: images/Redd.png role: mod +links: + orcid: 0000-0002-6149-2438 + google-scholar: MWPpI-QAAAAJ + home-page: https://medicine.utah.edu/faculty/andrew-redd --- Andrew Redd, Ph.D., is an Assistant Professor at the Division of Epidemiology. As a Statistician, his research interests include statistical data modeling for surveillance data, disease transmission models complex data models, network models, high performance computing, statistical programming, reproducible research methods and tool, and programming and analysis standardization. diff --git a/_members/Andy_Pavia.md b/_members/Andy_Pavia.md index 87c75cad..14ede414 100644 --- a/_members/Andy_Pavia.md +++ b/_members/Andy_Pavia.md @@ -2,6 +2,10 @@ name: Andy Pavia image: images/Andy_Pavia.jpg role: sme +links: + google-scholar: 8BXaUAEAAAAJ + linkedin: andrew-pavia-816b5229 + home-page: https://healthcare.utah.edu/find-a-doctor/andrew-t-pavia --- Andrew Pavia M.D. is the George and Esther Gross Presidential Professor and Chief of the Division of Pediatric Infectious Diseases and adjunct Professor of Medicine at the University of Utah. He also serves as Director of Hospital Epidemiology at Primary Children's Medical Center and Associate Director of the Antimicrobial Stewardship Program. He received his MD from Brown University and was a resident and Chief resident in Medicine at Dartmouth. He served as an EIS officer and Preventive Medicine Resident at the Centers for Disease Control and Prevention (CDC) where he worked on diarrheal disease and HIV. He did Pediatric and Adult ID fellowship at the University of Utah. diff --git a/_members/Assefaw_Gebremedhin.md b/_members/Assefaw_Gebremedhin.md index 6e175de5..5a5892cd 100644 --- a/_members/Assefaw_Gebremedhin.md +++ b/_members/Assefaw_Gebremedhin.md @@ -2,6 +2,11 @@ name: Assefaw Gebremedhin image: images/Assefaw_headshot.jpg role: mod +links: + orcid: 0000-0001-5383-8032 + google-scholar: iQs7spsAAAAJ + linkedin: assefaw-gebremedhin-06ba7915 + home-page: https://eecs.wsu.edu/~assefaw/home.html --- Assefaw Gebremedhin is an associate professor in the School of Electrical Engineering and Computer Science at Washington State University, where he leads the Scalable Algorithms for Data Science (SCADS) Lab. He also serves as Director and Lead PI of the Department of Defense-funded VICEROY Northwest Institute for Cybersecurity Education and Research (CySER), Lead of the Advancing AI Working Group at Washington State University, and Director of a Department of Education-funded Graduate Assistance in Areas of National Need (GAANN) program focused on training graduate students at the intersection of AI, data science, and engineering applications. diff --git a/_members/Damon_Toth.md b/_members/Damon_Toth.md index 8de20e5b..6d931b25 100644 --- a/_members/Damon_Toth.md +++ b/_members/Damon_Toth.md @@ -2,6 +2,10 @@ name: Damon Toth image: images/Damon_headshot.png role: mod +links: + orcid: 0000-0001-7393-4814 + google-scholar: 6XZi4fIAAAAJ + home-page: https://medicine.utah.edu/faculty/damon-toth --- Damon Toth, PhD, is an Assistant Professor in The Research Track in the Division of Epidemiology, Department of Internal Medicine, and an Adjunct Assistant Professor in the Department of Mathematics. As an applied mathematician, his research interests include mathematical modeling and simulation of the spread of infectious diseases. Dr. Toth’s research accomplishments include major contributions to the Final Supplementary Risk Assessment for the Boston University National Emerging Infectious Diseases Laboratories (NEIDL). His ongoing work includes network and transmission modeling for the CDC-sponsored Contacts among Utah’s School-age Population (CUSP) project, modeling of the infection and transmission of Clostidium difficile in hospitals, and modeling of dose-response, incubation period, and transmission of infectious pathogens for use in risk analysis and outbreak prediction and surveillance. Dr. Toth received his PhD in Applied Mathematics from the University of Washington. He received post-doctoral training in the Mathematical Biology group in the University of Utah’s Department of Mathematics. diff --git a/_members/Delaney_Thornton.md b/_members/Delaney_Thornton.md index a704ba99..fd438136 100644 --- a/_members/Delaney_Thornton.md +++ b/_members/Delaney_Thornton.md @@ -2,5 +2,7 @@ name: Delaney Thornton image: images/Thornton_headshot.jpeg role: pm +links: + orcid: 0009-0000-9802-493X --- Delaney Thornton, MPH is a research project manager in the Division of Epidemiology at the University of Utah. After a variety of clinical and research experiences, she discovered a love for collaborating with public health partners to improve community health outcomes through disease prevention and education interventions. Recent accomplishments include streamlining research analytics practices in Los Angeles County, as well as managing a cardiovascular disease education initiative in the Carribean. Alongside CFA ForeSITE project management, she supports the Sociotechnical System Evaluation, Design and Implementation team in conducting qualitative research. diff --git a/_members/Elissa_Schwartz.md b/_members/Elissa_Schwartz.md index 07dbd596..d9f8681c 100644 --- a/_members/Elissa_Schwartz.md +++ b/_members/Elissa_Schwartz.md @@ -2,6 +2,10 @@ name: Elissa Schwartz image: images/Elissa_Schwartz.jpg role: mod +links: + orcid: 0000-0002-3770-3047 + google-scholar: v94TbSYAAAAJ + home-page: https://math.wsu.edu/faculty/wsu-profile/ejs/ --- Dr. Schwartz combines experimental and theoretical research techniques to investigate mechanisms in virology, immunology, and infectious disease epidemiology. Her team uses quantitative methods and computer modeling in conjunction with data in order to predict unforeseen biological mechanisms, to determine biologically important rate parameters, and to evaluate pathogenic mechanisms that are difficult to test directly. This interdisciplinary approach, which couples mathematics with experiments, aims to advance our basic understanding of disease mechanisms and to lead to new therapeutic strategies. diff --git a/_members/Erin_Clancey.md b/_members/Erin_Clancey.md index aef41646..1596a0e3 100644 --- a/_members/Erin_Clancey.md +++ b/_members/Erin_Clancey.md @@ -2,6 +2,8 @@ name: Erin Clancey image: images/Erin_headshot.png role: mod +links: + orcid: 0000-0003-4728-4023 --- Dr. Clancey is a quantitative biologist whose research focuses on using mathematical and statistical models to understand complex biological processes. Dr. Clancey’s research interests include modeling disease transmission, disease ecology, predicting disease spillover, host-pathogen coevolution, and statistical methods. She has ongoing collaborations with the Lofgren lab group, the EEID-Palouse team, the Molecular Ecology of Zoonotic and Animal Pathogens (MEZAP) lab, and the NIH Center for Research in Emerging Infectious Diseases – Eastern and Central Africa. diff --git a/_members/Erin_Landguth.md b/_members/Erin_Landguth.md index 3f2c39a2..a8f066b0 100644 --- a/_members/Erin_Landguth.md +++ b/_members/Erin_Landguth.md @@ -2,6 +2,10 @@ name: Erin Landguth image: images/Landguth.png role: sme +links: + orcid: 0000-0002-7044-346X + google-scholar: KnfL0x4AAAAJ + home-page: https://umimpact.umt.edu/en/persons/erin-landguth/ --- Dr. Erin Landguth supports ForeSITE's Disease Ecology team. diff --git a/_members/Haeseon_Lee.md b/_members/Haeseon_Lee.md index b59d520e..63ecb7d2 100644 --- a/_members/Haeseon_Lee.md +++ b/_members/Haeseon_Lee.md @@ -2,6 +2,8 @@ name: Haeseon Lee image: images/Haeseon.png role: econ +links: + orcid: 0000-0003-3956-9758 --- Haeseon is currently a research fellow at the Department of Pharmacotherapy, University of Utah. She received her PharmD from Kangwon National University (2017) and MS in Regulatory Science from College of Pharmacy, Kyung Hee University (2023). Before falling in love with HERO, she worked in the pharmaceutical company as regulatory affairs. Currently, Haeseon supports CFA ForeSITE's economic impact team. Her research interests include health technology assessment and pharmacoeconomics, but these have a potential to expand further. diff --git a/_members/Jake_Wagoner.md b/_members/Jake_Wagoner.md index a0f82aa3..317d98b2 100644 --- a/_members/Jake_Wagoner.md +++ b/_members/Jake_Wagoner.md @@ -2,5 +2,7 @@ name: Jake Wagoner image: images/wagoner.jpg role: comp +links: + orcid: 0009-0000-5053-2281 --- Jake is a research software engineer at SCI, as well as a current masters student studying Computer Graphics and Visualization, at the University of Utah. He is interested in accessible science and visualization, as well as physical simulation models. Jake supports the software team for the CFA ForeSITE program. diff --git a/_members/Jeannie_Mayer.md b/_members/Jeannie_Mayer.md index 01ad953f..6c265387 100644 --- a/_members/Jeannie_Mayer.md +++ b/_members/Jeannie_Mayer.md @@ -2,6 +2,8 @@ name: JeanMarie Mayer image: images/Jeannie.png role: sme +links: + orcid: 0000-0002-7699-4414 --- Dr. JeanMarie Mayer is an infectious disease specialist supporting the ForeSITE program. diff --git a/_members/Joel_Hartsell.md b/_members/Joel_Hartsell.md index a015f46c..95055257 100644 --- a/_members/Joel_Hartsell.md +++ b/_members/Joel_Hartsell.md @@ -2,6 +2,8 @@ name: Joel Hartsell image: images/Joel_headshot.png role: stedi +links: + orcid: 0000-0002-5193-9013 --- Dr. Joel Hartsell, President and Principal Consultant at Epi-Vant, is an infectious disease epidemiologist and informatician with over a decade of experience spearheading data-driven health initiatives in both public and private sectors. Dr. Hartsell's contributions have been pivotal in advancing infectious disease surveillance and enhancing the field of public health informatics. He earned his Ph.D. in Population Health Sciences with an emphasis on Clinical and Translational Epidemiology from the University of Utah, an MPH from Indiana University, and a Bachelor of Science in Biology from Bethel College. diff --git a/_members/Julie_ Szymczak.md b/_members/Julie_ Szymczak.md index f4846759..fbf4967a 100644 --- a/_members/Julie_ Szymczak.md +++ b/_members/Julie_ Szymczak.md @@ -2,6 +2,10 @@ name: Julie Szymczak image: images/Julie_headshot.jpeg role: stedi +links: + google-scholar: JEgCsm8AAAAJ + linkedin: julie-szymczak-527a1919 + home-page: https://medicine.utah.edu/faculty/julia-e-szymczak --- Julia "Julie" Szymczak, PhD is an Associate Professor in the Division of Epidemiology at the University of Utah School of Medicine, where she Co-Directs the Utah Quality Advancement Laboratory (UQuAL). Dr. Szymczak is a medical sociologist who leads research that integrates social science theory and methods into efforts to transform healthcare delivery so it is reliably safe, equitable, and high quality. Her work over the past eight years has focused on reducing the harm to patients and populations from antibiotic resistant bacteria with the following objectives: 1) characterize the social determinants of antibiotics across clinical contexts, 2) generate evidence about what works to improve how antibiotics are prescribed, and 3) advance the use of implementation science in antibiotic stewardship research. A hallmark of Dr. Szymczak's work is an interest in the influence of organizational context on efforts to modify healthcare delivery. To center this interest, her work on antibiotics has spanned both human and veterinary medicine and taken place across varied clinical contexts including pediatrics, primary care, internal medicine, surgery, emergency medicine, and critical care. diff --git a/_members/Karim_Khader.md b/_members/Karim_Khader.md index 3d173c87..b8f6b629 100644 --- a/_members/Karim_Khader.md +++ b/_members/Karim_Khader.md @@ -2,6 +2,10 @@ name: Karim Khader image: images/Karim_headshot.png role: mod +links: + orcid: 0000-0002-7206-8077 + linkedin: karim-khader-02150a1b6 + home-page: https://medicine.utah.edu/faculty/karim-khader --- Karim’s research areas of interest are in the advancing of statistical methodology, and the use of mathematical models and computer simulations to understand the behavior of complex systems. These two general interests are complementary to one another; mathematical modeling and computer simulation represent a data-generating process which can be analyzed through the use of various statistical methodologies, while advances in statistical methodologies are needed to inform and parameterize computer simulations as the data-generating processes become increasingly complex. He has pursued these general interests across multiple domains of study with a particular focus on transmission and infection due to antimicrobial resistant organisms in healthcare facilities, particularly with respect to understanding how to improve patient outcomes by reducing rates of healthcare-associated infections and gaining deeper insights into the key factors that result in infection. diff --git a/_members/Khanh_Duong.md b/_members/Khanh_Duong.md index 3b0f8d2a..5c3bda9b 100644 --- a/_members/Khanh_Duong.md +++ b/_members/Khanh_Duong.md @@ -2,5 +2,7 @@ name: Khanh Duong image: images/Khanh_Duong.png role: econ +links: + orcid: 0000-0002-7152-9476 --- Khanh is a PhD candidate at the Department of Pharmacotherapy, University of Utah, College of Pharmacy, under the supervision of Dr. Nathorn (Nui) Chaiyakunapruk. She obtained her bachelor's degree in Pharmacy from Vietnam and a master's degree in Health Technology Assessment from Thailand. Her passion lies in conducting research on evidence-based health policies. Currently, her research focuses on health equity and infectious disease policy, evaluating policies from clinical, cost, and equity perspectives. She is also assisting ForeSITE's Toolset 5 team. diff --git a/_members/Kim_Shoaf.md b/_members/Kim_Shoaf.md index 772cfea9..ba2001de 100644 --- a/_members/Kim_Shoaf.md +++ b/_members/Kim_Shoaf.md @@ -2,6 +2,11 @@ name: Kimberley Shoaf image: images/Kim_headshot.png role: stedi +links: + orcid: 0000-0001-6754-2216 + google-scholar: PEC0LDUAAAAJ + linkedin: kimberley-shoaf-28321017 + home-page: https://medicine.utah.edu/faculty/kimberley-shoaf --- Dr. Kimberley Shoaf is Professor in the Division of Public Health and Associate Chief for Community Engaged Scholarship. She has more than 30 years of experience in public health practice including experience as a health educator, trainer, and researcher. She has particular expertise in program planning and evaluation applicable to both general public health practice and emergency public health. She has worked with more than 50 local health departments in preparing for responding to disasters through training, assessments, and exercises as well as in writing of plans. She has both a research and an educational focus on workforce development within public health and primary care. Dr. Shoaf received her Master of Public Health degree in Population and Family Health and a DrPH in Community Health Sciences from the Fielding School of Public Health at the University of California, Los Angeles. diff --git a/_members/Leisha.md b/_members/Leisha.md index 202b1817..281e4fa1 100644 --- a/_members/Leisha.md +++ b/_members/Leisha.md @@ -2,6 +2,8 @@ name: Leisha Nolen image: images/leisha.png role: sme +links: + orcid: 0000-0002-7885-9347 --- Dr. Leisha Nolen is the Utah State Epidemiologist with the Utah Department of Health and Human Services. She is an adjunct in the U of U school of medicine. Her works focuses on public health epidemiology and covers health topics that affect all aspects of health in Utah. She is interested in collaborating on a variety of topics from evaluating the most recent health trends in our state to finding ways to make public health more impactful to our society. diff --git a/_members/Nate_Seegert.md b/_members/Nate_Seegert.md index a06888eb..170160e5 100644 --- a/_members/Nate_Seegert.md +++ b/_members/Nate_Seegert.md @@ -2,6 +2,9 @@ name: Nathan Seegert image: images/Nate_headshot.png role: econ +links: + orcid: 0000-0002-0862-1181 + home-page: https://nathanseegert.com --- Nathan Seegert collaborates with policymakers and businesses to further our understanding of the economy. He co-founded the Utah Consumer and Business Economic Surveys, the Banking, Entrepreneurship, Regulations, and Taxes Study, the Utah Tax Invitational and the Utah Public Finance Invitational (UPFIN). He is the director of the Business and Public Policy Center. He currently is working with the Forecasting and Surveillance of Infectious Threats and Epidemics (ForeSITE) center on a $17.5 million grant from the Centers for Disease Control and Prevention (CDC) and previously worked on Utah's Health and Economic Recovery Outreach (HERO) Project. His work has been published in top academic journals such as The Quarterly Journal of Economics, The Journal of Finance, The Review of Economics and Statistics, and the Journal of Public Economics. It has been featured in The Wall Street Journal, The Washington Post, The Harvard Business Review, CBS Moneywatch, Forbes, Bloomberg, and The Atlantic. Nathan currently teaches at the University of Utah as an associate professor (with tenure) in the finance department. He is a member of the Utah Governor's Economic Council, an Ivory-Boyer Real Estate Center Research Fellow, a Faculty Advisor for the Kem C. Gardner Policy Institute, partners with Texas AM Geoservices, and is a David Eccles Faculty Fellow. diff --git a/_members/Nui_Chaiyakunapruk.md b/_members/Nui_Chaiyakunapruk.md index c02dadbb..c0c183cc 100644 --- a/_members/Nui_Chaiyakunapruk.md +++ b/_members/Nui_Chaiyakunapruk.md @@ -2,6 +2,10 @@ name: Nathorn (Nui) Chaiyakunapruk image: images/Nathorn_Chaiyakunapruk.jpg role: econ +links: + orcid: 0000-0003-4572-8794 + google-scholar: HcnuwjYAAAAJ + home-page: https://nui-lab.net/ --- Dr. Chaiyakunapruk is a Professor in the College of Pharmacy at The University of Utah. His expertise is in Health Technology Assessment and Health Policy. He has applied health economics, real world data analysis, and evidence synthesis to support national and global policy, especially his contributions to the World Health Organization and Centers for Disease Control. His current research works have been focused on health equity and health economics. He is a co-author of CHEERS 2022 (Consolidated Health Economic Evaluation Reporting Standards Statement) and WHO guide for standardization of economic evaluations of immunization programmes, 2nd edition. Dr. Chaiyakunapruk has an H-index of 58 and is an author of more than 300 international publications in peer-reviewed journals. He was a Policy Leader of SHEPheRD 2021 Domain 1-A015 and published an umbrella review of race and ethnicity disparity of COVID-19 related outcomes. For ForeSITE, he is one of the co-leads of Toolset 5: economic impact analysis. Currently, he is working on approach to incorporate social determinants of health as part of infectious disease modeling to support policy decision making and implementation process. diff --git a/_members/Paul_Rosen.md b/_members/Paul_Rosen.md index f1c3cb09..61d945e6 100644 --- a/_members/Paul_Rosen.md +++ b/_members/Paul_Rosen.md @@ -2,5 +2,9 @@ name: Paul Rosen image: images/paul.png role: comp +links: + orcid: 0000-0002-0873-9518 + google-scholar: 6iv6AEcAAAAJ + home-page: https://cspaul.com/ --- Dr. Paul Rosen's interests lie at the intersection of scientific and information visualization, where he utilizes a mix of human-centered design and geometry- and topology-based approaches to improve the efficacy of visualization tools. He serves as Associate Director of the Scientific Computing and Imaging (SCI) Insitute at the University of Utah and supports CFA ForeSITE. diff --git a/_members/Rahat_Zaman.md b/_members/Rahat_Zaman.md index 8534486c..704ca529 100644 --- a/_members/Rahat_Zaman.md +++ b/_members/Rahat_Zaman.md @@ -2,5 +2,7 @@ name: Rahat Zaman image: images/Rahat.png role: comp +links: + orcid: 0000-0001-6728-7569 --- Rahat is a Ph.D. student in the School of Computing at the Scientific Computing and Imaging Institute, University of Utah, where he worked in Shape+VIS Lab, advised by Paul Rosen. He received his M.S. in Computer Science from the University of Utah in 2024 and completed a research internship at Epsilon in 2025. He plans to graduate in Spring 2027. Rahat's research intersects between Data Visualization and Deep Learning. Currently, he is developing a declarative layer visualization grammar for deep learning models, which will enable generalized visualization of any deep learning model with a unified interface. diff --git a/_members/Rashid.md b/_members/Rashid.md index d8cb7b20..298307b8 100644 --- a/_members/Rashid.md +++ b/_members/Rashid.md @@ -2,6 +2,9 @@ name: Muhammed Rashid image: images/Rashid.png role: econ +links: + orcid: 0000-0002-6390-7764 + google-scholar: qqpa8zkAAAAJ --- Muhammed Rashid is a Post-Doctoral Research Associate at College of Pharmacy, University of Utah, Salt Lake City, USA. He completed his PhD from Manipal Academy of Higher Education (MAHE), India. He also served as a Guest Faculty at MAHE Manipal to teach the Evidence Synthesis for Post-Graduate Health Economic Students. He holds responsible positions in organizations like ISPOR Student Network, ISPE Student Council and Federation of Clinical Pharmacists in India (FCPI). He has received many scholarships and travel grants from national and international organizations to attend Scientific conferences. He has authored numerous scientific papers in various international reputed journals and authored multiple book chapters. His research interests include Evidence Synthesis, Systematic Reviews, Meta-analysis, Pharmacoeconomics, pharmacoepidemiology, cutaneous adverse reactions, and critical care medicine. His Research Profile can be found [here](https://scholar.google.co.in/citations?hl=en&user=qqpa8zkAAAAJ). diff --git a/_members/Rich_Nelson.md b/_members/Rich_Nelson.md index 2fed1dc0..2d7cd571 100644 --- a/_members/Rich_Nelson.md +++ b/_members/Rich_Nelson.md @@ -2,6 +2,10 @@ name: Richard Nelson image: images/Rich_headshot.png role: econ +links: + orcid: 0000-0002-4441-7460 + google-scholar: GDEIDcgAAAAJ + home-page: https://medicine.utah.edu/faculty/richard-e-nelson --- Dr. Nelson leads the Economic Analysis Impact team for ForeSITE. diff --git a/_members/Sima.md b/_members/Sima.md index e31c18fd..289f8b9b 100644 --- a/_members/Sima.md +++ b/_members/Sima.md @@ -2,5 +2,7 @@ name: Sima Najafzadehkhoei image: images/Sima.png role: mod +links: + orcid: 0009-0002-6253-2910 --- Sima is a biostatistics Ph.D. student dedicated to building reliable, data-driven tools for infectious-disease modeling and public-health decision-making. Her current work focuses on machine-learning–based calibration for agent-based epidemic models, including a three-layer bidirectional LSTM calibrator that improves accuracy and runtime over ABC and is being productized as epiworldRcalibrate, and on the comparative evaluation of effective reproduction number (Rt) estimators using agent-based network models. Sima collaborates closely with Dr. Bernardo Modenesi, Dr. Yue Zhang, and Dr. George Vega Yon, and she contributes to open-source tools such as epiworldR. diff --git a/_members/Skyler_Crouch.md b/_members/Skyler_Crouch.md index 4563daf3..5a911f28 100644 --- a/_members/Skyler_Crouch.md +++ b/_members/Skyler_Crouch.md @@ -2,6 +2,8 @@ name: Skyler Crouch image: images/Skyler_headshot.jpg role: stedi +links: + orcid: 0009-0009-2741-5445 --- Skyler is a public health PhD student at the University of Utah interested in incorporating health equity principles into epidemiology. He is currently a PhD student researcher for the ForeSITE Center, as well as the instructor of the Public Health Nutrition course at the University of Utah. Previously, Skyler has served as a health equity epidemiologist for the U of U Department of Family & Preventive Medicine, a manager for the U of U COVID-19 Contact Tracing Team, and the COVID-19 vaccination coordinator for the main U of U campus. He has a B.Sc. in Nutritional Science from Brigham Young University and an MPH from the University of Utah. diff --git a/_members/Stephanie_Seifert.md b/_members/Stephanie_Seifert.md index 64090491..096c7829 100644 --- a/_members/Stephanie_Seifert.md +++ b/_members/Stephanie_Seifert.md @@ -2,6 +2,8 @@ name: Stephanie Seifert image: images/Seifert.png role: sme +links: + orcid: 0000-0002-4397-6156 --- Dr. Seifert is the PI of the Molecular Ecology of Zoonotic and Animal Pathogens (MEZAP) lab where she studies the factors contributing to viral emergence and cross species transmission. Dr. Seifert completed her doctoral dissertation research in the Dept. of Biology, Ecology and Evolution track at UPenn. Her postdoctoral training was completed at the NIH Laboratory of Virology where she worked on filoviruses and henipaviruses in bats both in the field and in the BSL4 laboratory. Dr. Seifert assisted in several outbreak response efforts at NIH including work in Congo during outbreaks of Ebola virus disease in 2017 and 2018 and in early 2020 during the COVID-19 pandemic. Research in the MEZAP lab at WSU incorporates methodologies from field-based ecology, population genetics, computational biology, and laboratory modeling to better understand and ultimately mitigate cross-species transmission of viruses at human-livestock-wildlife interfaces. My goal is for the research environment in the MEZAP lab to be interdisciplinary and inclusive so our work can be innovative, and impactful. Ongoing collaborations include research with the Viral Emergence Institute, the EEID-Palouse team, and the NIH Center for Research in Emerging Infectious Diseases – eastern and central Africa. diff --git a/_members/Tingying_He.md b/_members/Tingying_He.md index 7b6ec4a4..9f3c27ff 100644 --- a/_members/Tingying_He.md +++ b/_members/Tingying_He.md @@ -2,5 +2,8 @@ name: Tingying He image: images/tingying-profile.png role: comp +links: + orcid: 0000-0002-9670-5587 + home-page: https://tingying-he.github.io --- Tingying is a research scientist at the SCI Institute, University of Utah. Her research focuses on information visualization, with a particular interest in designing and developing accessible visualizations. In her free time, she enjosy walking through cities, exploring cultural heritage, and writing in her journal. diff --git a/_members/danielle_nguyen.md b/_members/danielle_nguyen.md index b6290163..95070e3e 100644 --- a/_members/danielle_nguyen.md +++ b/_members/danielle_nguyen.md @@ -2,6 +2,8 @@ name: Danielle Nguyen image: images/Danielle_Nguyen.jpg role: econ +links: + orcid: 0009-0001-9722-4275 --- Danielle Nguyen is a PhD candidate at the Department of Pharmacotherapy, University of Utah, College of Pharmacy. She obtained her pharmacy doctorate at Roseman University of Health Sciences and subsequently completed a two-year Health Systems Pharmacy Administration residency at Intermountain Healthcare. After finishing her residency, she completed her bachelor's degree in economics at the University of Utah while working as a clinical pharmacist and interning at the Pharmacotherapy Outcomes Research Center (PORC). Her research work currently involves modeling and health equity. She received a scholarship and attended the Summer Institute of Statistics and Modeling in Infectious Diseases workshop in 2023 to gain more experience with infectious disease modeling. She is assisting the ForeSITE Toolset 5 team. diff --git a/_members/elizabeth_weybright.md b/_members/elizabeth_weybright.md index aca350d3..0cdf3e0f 100644 --- a/_members/elizabeth_weybright.md +++ b/_members/elizabeth_weybright.md @@ -2,6 +2,8 @@ name: Elizabeth Weybright image: images/Weybright_Elizabeth.jpg role: stedi +links: + orcid: 0000-0002-3995-7067 --- Elizabeth Weybright is an Associate Professor and Adolescent Extension Specialist in the Department of Human Development at Washington State University. Grounded in prevention science and systems theory, her research focuses on adolescent health promotion and prevention. This spans a) basic research on topics such as youth behavior (e.g, rural youth firearm engagement) and leisure experiences (e.g., boredom, motives); b) dissemination, adaptation, and implementation of substance use prevention and positive youth development programs; and c) building capacity among professionals and systems for delivery of evidence-based approaches for health promotion and prevention. An evolving line of research is around Health Extension and using the Extension network and related strengths to more effectively deliver community care in rural areas to address health inequities. diff --git a/_members/eric-lofgren.md b/_members/eric-lofgren.md index 5b1122b8..1afcb5b0 100644 --- a/_members/eric-lofgren.md +++ b/_members/eric-lofgren.md @@ -2,6 +2,11 @@ name: Eric Lofgren image: images/Eric_headshot.png role: pi +links: + orcid: 0000-0003-2052-7240 + google-scholar: DbBAq1MAAAAJ + linkedin: eric-lofgren-63458535 + bluesky: https://bsky.app/profile/germsandnumbers.bsky.social --- Dr. Lofgren is an infectious disease epidemiologist whose research focuses on the use of mathematical and computational models of disease transmission, particularly the transmission of antimicrobial resistant infections within and outside healthcare settings, as well as emerging infectious diseases. His work often focuses on producing policy-relevant results, working hand-in-hand with clinicians and policy makers to produce reproducible, quantitative guidance for designing and evaluating public health interventions. diff --git a/_members/george-vegayon.md b/_members/george-vegayon.md index a64fbab6..2bc0042d 100644 --- a/_members/george-vegayon.md +++ b/_members/george-vegayon.md @@ -5,6 +5,9 @@ role: comp links: orcid: 0000-0002-3171-0844 home-page: https://ggvy.cl + google-scholar: 34E1yTAAAAAJ + linkedin: georgevegayon + bluesky: https://bsky.app/profile/gvegayon.bsky.social --- I am an Assistant Professor of Research at the [Division of Epidemiology at the University of Utah](https://medicine.utah.edu/internalmedicine/epidemiology/). I work on studying [Complex Systems](https://cssociety.org/about-us/what-are-cs) using diff --git a/_members/lindsay-keegan.md b/_members/lindsay-keegan.md index bd2f0265..9a632d17 100644 --- a/_members/lindsay-keegan.md +++ b/_members/lindsay-keegan.md @@ -4,6 +4,9 @@ image: images/KeeganHeadshot.png role: pi links: home-page: https://www.utahinfectiousdiseasedynamics.org + orcid: 0000-0002-8526-3007 + google-scholar: BVGEpuUAAAAJ + linkedin: lindsaytkeegan --- Lindsay is interested in developing and applying mathematical and statistical methods to understand how infectious disease dynamics impact control and elimination efforts. A major focus of her research centers around partnering with public health and healthcare officials to develop and deploy novel methods for decision support tools in response to disease outbreaks, epidemics, and pandemics. She is interested in all manner of statistical and dynamical methods that address questions on the ecology and evolution of infectious diseases. Currently she is primarily working on using statistical and mathematical techniques to understand the how pathogens spread in healthcare facilities; on developing a modeling toolkit for state and local public health and healthcare organizations across the intermountain west to respond to respiratory viral outbreaks; and on identifying novel strategies to control re-emerging diseases globally, such as Diphtheria. diff --git a/_members/makoto-jones.md b/_members/makoto-jones.md index ca38658c..d9df3005 100644 --- a/_members/makoto-jones.md +++ b/_members/makoto-jones.md @@ -2,6 +2,8 @@ name: Makoto Jones image: images/Makoto_headshot.png role: pi +links: + orcid: 0000-0001-5580-6739 --- Dr. Jones is an infectious disease internist whose clinical interests lie primarily in the diagnosis and treatment of nosocomial pathogens and evidence-based prescription of antimicrobials. diff --git a/_members/matt-samore.md b/_members/matt-samore.md index 675e4bde..23c5f4e4 100644 --- a/_members/matt-samore.md +++ b/_members/matt-samore.md @@ -2,6 +2,9 @@ name: Matthew Samore image: images/Samore_Matt.jpg role: pi +links: + orcid: 0000-0002-4862-9196 + google-scholar: QOM1UpUAAAAJ --- Matthew Samore, MD is the Principal Investigator of both the Salt Lake VA Informatics Decision Enhancement and Surveillance (IDEAS) Center and the VA Consortium for Healthcare Informatics Research. He is a Professor of Medicine, Adjunct Professor of Biomedical Informatics, and Division Chief of Epidemiology at the University of Utah. diff --git a/_members/michael-rubin.md b/_members/michael-rubin.md index d60296c9..17245229 100644 --- a/_members/michael-rubin.md +++ b/_members/michael-rubin.md @@ -4,6 +4,8 @@ image: images/Rubin_headshot.png role: pi aliases: - M Rubin +links: + bluesky: https://bsky.app/profile/slcrubes.bsky.social --- Dr. Rubin has clinical expertise in infectious diseases and hospital epidemiology, with a specific focus on preventable infections acquired from interactions with the health care setting. In particular, he is interested in infections caused by organisms resistant to multiple antibiotics (or, "multidrug-resistant organisms"), such as methicillin-resistant Staphylococcus aureus (MRSA) and Clostridium difficile. Although he specializes in the treatment of these types of infections, he also provides expertise in preventing these infections through the promotion of various infection control measures, such as strict adherence to handwashing, early removal of invasive devices, consistent use of contact isolation practices, and appropriate use of antibiotics. diff --git a/_members/pilar_fernandez.md b/_members/pilar_fernandez.md index bc17a55e..18cff3e5 100644 --- a/_members/pilar_fernandez.md +++ b/_members/pilar_fernandez.md @@ -2,6 +2,9 @@ name: Pilar Fernandez image: images/Pilar_Fernandez.jpeg role: sme +links: + google-scholar: dLx_A-MAAAAJ + home-page: https://mpilarfernandez.com/ --- Dr. Fernandez focuses on the transmission of zoonotic diseases within a One Health framework, integrating ecology and epidemiology methods. Her main research interests lie in understanding the transmission of zoonotic diseases as complex socio-ecological systems. Leading community-based participatory research in Latin American and U.S. communities, She her work has focused on integrating data from field studies, encompassing animal and human disease data, along with qualitative and quantitative data from socio-demographic and behavioral studies, and environmental data. Using mathematical, computational, and statistical models, including spatially-explicit ones, She aims to integrate the human and social dimensions of disease transmission. Her work at ForeSITE will be related to adapt scenario modeling of multi-host zoonotic diseases and vector-borne diseases to the regional context, and to provide insights into the appropriate ecological complexity of transmission needed to inform models for decision-making. diff --git a/_styles/-theme.scss b/_styles/-theme.scss index 0caecc61..6a93d2b2 100644 --- a/_styles/-theme.scss +++ b/_styles/-theme.scss @@ -1,21 +1,26 @@ --- --- +// ForeSITE brand colors (from the ForeSITE logo guidelines): +// crimson #a60f2d (Pantone 201 C), gold #fdb921 (Pantone 1235 C), +// gray #4e4e4e (Pantone 7540 C). Every other color here is a tint or +// shade of those three -- no new hues. + // colors [data-dark="false"] { - --primary: #0795d9; - --secondary: #7dd3fc; - --text: #000000; + --primary: #a60f2d; + --secondary: #fdb921; + --text: #2c2c2c; --background: #ffffff; - --background-alt: #fafafa; - --light-gray: #e0e0e0; - --gray: #808080; - --dark-gray: #404040; + --background-alt: #f8f6f4; + --light-gray: #e3ddd8; + --gray: #4e4e4e; + --dark-gray: #4e4e4e; --overlay: #00000020; } [data-dark="true"] { - --primary: #0795d9; - --secondary: #075985; + --primary: #c2405a; + --secondary: #8a6413; --text: #ffffff; --background: #181818; --background-alt: #1c1c1c; @@ -27,9 +32,14 @@ :root { // font families - --title: "Barlow", sans-serif; - --heading: "Barlow", sans-serif; - --body: "Barlow", sans-serif; + // Proxima Nova is the logo face but is licensed and can't be + // shipped; Montserrat (loaded from Google Fonts, see fonts.html) + // is the closest open substitute. Only one quoted family per + // declaration below -- the `google_fonts` filter in fonts.html + // scans these for a single quoted name per line. + --title: "Montserrat", ui-sans-serif, system-ui, sans-serif; + --heading: "Montserrat", ui-sans-serif, system-ui, sans-serif; + --body: "Montserrat", ui-sans-serif, system-ui, sans-serif; --code: "Roboto Mono", monospace; // font sizes @@ -48,7 +58,7 @@ --compact: 1.5; // effects - --rounded: 3px; + --rounded: 12px; --shadow: 0 0 10px 0 var(--overlay); --transition: 0.2s ease; } diff --git a/_styles/footer.scss b/_styles/footer.scss index d0d52774..032a7ff3 100644 --- a/_styles/footer.scss +++ b/_styles/footer.scss @@ -12,6 +12,16 @@ footer { box-shadow: var(--shadow); } +// footer is always the ForeSITE brand gray, regardless of light/dark mode +footer.background[data-dark="true"] { + --background: #4e4e4e; + --text: #ffffff; +} + +.footer-logo { + height: 32px; +} + footer a { color: var(--text) !important; } diff --git a/_styles/header.scss b/_styles/header.scss index 045e2935..567d6806 100644 --- a/_styles/header.scss +++ b/_styles/header.scss @@ -14,6 +14,7 @@ header { flex-wrap: wrap; gap: 20px; padding: 20px; + padding-top: 25px; box-shadow: var(--shadow); @if $sticky { @@ -23,6 +24,26 @@ header { } } +// ForeSITE brand bar: crimson-to-gold gradient strip along the top edge. +// Uses ::after (not ::before) because header also has class="background", +// and .background:before (background.scss) already claims that +// pseudo-element for the decorative header-image overlay. +header::after { + content: ""; + position: absolute; + top: 0; + left: 0; + right: 0; + height: 5px; + z-index: 2; + background: linear-gradient( + 90deg, + var(--primary) 0%, + var(--primary) 45%, + var(--secondary) 100% + ); +} + header a { color: var(--text); text-decoration: none; diff --git a/images/foresite-logo-white.png b/images/foresite-logo-white.png new file mode 100644 index 00000000..a85f47d2 Binary files /dev/null and b/images/foresite-logo-white.png differ diff --git a/images/foresite-logo.png b/images/foresite-logo.png new file mode 100644 index 00000000..ac4d4b3e Binary files /dev/null and b/images/foresite-logo.png differ diff --git a/images/foresite-mark.png b/images/foresite-mark.png new file mode 100644 index 00000000..7d67f7f6 Binary files /dev/null and b/images/foresite-mark.png differ diff --git a/images/icon.png b/images/icon.png index 260fe236..7d67f7f6 100644 Binary files a/images/icon.png and b/images/icon.png differ diff --git a/images/logo.png b/images/logo.png index a718c875..a85f47d2 100644 Binary files a/images/logo.png and b/images/logo.png differ diff --git a/research/index.md b/research/index.md index 60ed8ae1..423254e5 100644 --- a/research/index.md +++ b/research/index.md @@ -9,6 +9,8 @@ nav: {% include section.html %} +## {% include icon.html icon="fa-solid fa-star" %}Featured + {% include list.html data="citations" @@ -16,3 +18,20 @@ nav: filters="group: featured" style="rich" %} + +## {% include icon.html icon="fa-solid fa-list" %}All Publications + +Publications by ForeSITE members are collected weekly from ORCID, PubMed, +Europe PMC, arXiv and Crossref by [InsightNet +Explorer](https://epiforesite.github.io/insightnet-explorer/), the +publication-tracking dashboard shared across the ForeSITE Network. ForeSITE +member authors are shown in **bold**. + +{% include search-box.html %} +{% include search-info.html %} + +{% + include list.html + data="citations" + component="citation" +%}