fdmr/_pkgdown.yml at devel · 4DModeller/fdmr · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
url: https://4dmodeller.github.io/fdmr/
template:
  bootstrap: 5
  # bootswatch: lux
  # bslib:
  #   pkgdown-nav-height: 100px
navbar:
  structure:
    left: [home, articles, reference, hackathon]
    right: [github]
  components:
    articles:
      text: Tutorials
      menu:
        - text: Getting started
        - text: Installation
          href: articles/getting_started.html
        - text: "Data pre-processing"
          href: articles/data_preprocessing.html
        - text: Expected data structure
          href: articles/expected_data_structure.html
        - text: ---
        - text: End to end tutorials
        - text: How to choose how to model
          href: articles/decision_tree.html
        - text: Simulation Tutorial (Gaussian data)
          href: articles/simulation_gaussian_data.html
        - text: Simulation Tutorial (Poisson data)
          href: articles/simulation_poisson_data.html
        - text: ---
        - text: Shiny apps
        - text: "Mesh building"
          href: articles/meshbuilder.html
        - text: "Model builder"
          href: articles/modelbuilder.html
        - text: ---
        - text: In depth tutorials
        - text: "COVID-19"
          href: articles/covid.html
        - text: "COVID-19 MCMC"
          href: articles/covid_mcmc.html
        - text: "COVID-19 MCMC (Space-time)"
          href: articles/covid_ST_mcmc.html
        - text: "Hydrology"
          href: articles/hydro.html
        - text: "Priors exploration"
          href: articles/priors.html
        - text: "Ocean heat content mapping"
          href: articles/ohc_tutorial.html
        - text: ---
        - text: "FAQ"
        - text: INLA Crash FAQ
          href: articles/inla_FAQ.html


    hackathon:
      text: Hackathon
      href: https://4dmodeller.github.io/4DM_Hackathon/
authors:
  Gareth Jones:
    href: https://github.com/gareth-j/
  Xueqing Yin:
    href: https://www.researchgate.net/profile/Xueqing_Yin
  John Aiken:
    href: https://mnky9800n.github.io/
reference:
- title: Plotting
  desc:  Create simple figures
  contents:
    - starts_with("plot_")
- title: Shiny apps
  desc: Interactive tools for building meshes, plotting maps and investigating priors
  contents:
    - mesh_builder
    - model_builder
    - model_viewer
- title: Parsing model output
  desc: Functions to help parse model output and extract useful information
  contents:
    - parse_model_output
    - create_prediction_field
- title: Mesh tools
  desc: Functions to help with creation and investigation of meshes
  contents:
    - mesh_to_spatial
    - mesh_checker
- title: Geospatial helpers
  desc: Functions to help convert coordinates and units
  contents:
    - latlong_to_utm
    - antimeridian_wrapping
    - convert_from_lon_360
- title: Utility functions
  desc:  These help us handle paths, retrieve data etc
  contents:
    - to_dates
    - retrieve_tutorial_data
    - get_tutorial_datapath
    - load_tutorial_data
    - clear_caches
    - numbers_only